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Archives of Virology
Published in: Archives of Virology 4/2008

01-04-2008 | Annotated Sequence Record

Complete nucleotide sequence of a South African isolate of grapevine leafroll-associated virus 3 reveals a 5′UTR of 737 nucleotides

Authors: H. J. Maree, M. -J. Freeborough, J. T. Burger

Published in: Archives of Virology | Issue 4/2008

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Excerpt

Grapevine leafroll-associated virus 3 (GLRaV-3) is the type species of the genus Ampelovirus (family Closteroviridae) [1]. It is an economically important virus that is known to only infect Vitis spp. and that has a negative impact on the wine and table grape industries worldwide. To date, there has been only one report that claims the complete nucleotide sequence of GLRaV-3, by Ling et al. in 2004 (isolate NY-1, AF037268) [2]. In that report the 5′ untranslated region (UTR) was found to be 158 nt in length. Here we report that the sequence of GLRaV-3, isolate GP181, has a 5′UTR of 737 nt. This extended UTR was found in all other South African isolates of GLRaV-3 that were analysed. …
Footnotes
1
The GenBank accession number for the sequence reported in this paper is EU259806.
 
Literature
1.
Martelli GP, Agranovsky AA, Bar-Joseph M, Boscia D, Candresse T, Coutts RHA, Dolja VV, Falk BW, Gonsalves D, Jelkmann W, Karasev AV, Minafra A, Namba S, Vetten HJ, Wisler GC, Yoshikawa N (2002) The family Closteroviridae revised. Arch Virol 147(10):2039–2044
2.
Ling K-S, Zhu H-Y, Gonsalves D (2004) Complete nucleotide sequence and genome organization of Grapevine leafroll-associated virus 3, type member of the genus Ampelovirus. J Gen Virol 85:2099–2102PubMedCrossRef
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Hu JS, Gonsalves D, Teliz D (1990) Characterization of closterovirus-like particles associated with leafroll disease. Phytopathology 128:1–14
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Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95–98
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Meng B, Li C, Goszczynski DE, Gonsalves D (2005) Genome sequences and structures of two biologically distinct strains of Grapevine leafroll-associated virus 2 and sequence analysis. Virus Genes 31(1):31–41PubMedCrossRef
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Rott ME, Jelkmann W (2005) Little cherry virus-2: sequence and genomic organization of an unusual member of the Closteroviridae. Arch Virol 150:107–123PubMedCrossRef
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Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer ELL, Bateman A (2006) Pfam: clans, web tools and services. Nucleic Acids Res Database Issue 34:D247–D251CrossRef
Metadata
Title
Complete nucleotide sequence of a South African isolate of grapevine leafroll-associated virus 3 reveals a 5′UTR of 737 nucleotides
Authors
H. J. Maree
M. -J. Freeborough
J. T. Burger
Publication date
01-04-2008
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 4/2008
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-008-0040-y

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