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Published in: Archives of Virology 8/2012

01-08-2012 | Original Article

Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming

Authors: Stephen J. Wylie, Michael G. K. Jones

Published in: Archives of Virology | Issue 8/2012

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Abstract

Complete genome sequences were obtained from two isolates of the carlavirus nerine latent virus from hippeastrum and narcissus plants, two isolates of the potyvirus hippeastrum mosaic virus from a hippeastrum plant, and one isolate each of the potyviruses narcissus degeneration virus, narcissus yellow stripe virus and Vallota speciosa virus from narcissus plants. Proposals are made to clarify the current confusion surrounding the naming of some of these viruses.
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Literature
1.
go back to reference Adams MJ, Antinow JF, Bar-Joseph M, Brunt AA, Candresse T, Foster GD, Martelli GP, Milne RG, Fauquet CM (2004) The new plant family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149:1045–1060PubMed Adams MJ, Antinow JF, Bar-Joseph M, Brunt AA, Candresse T, Foster GD, Martelli GP, Milne RG, Fauquet CM (2004) The new plant family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149:1045–1060PubMed
2.
go back to reference Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479PubMedCrossRef Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150:459–479PubMedCrossRef
3.
go back to reference Alexandre MAV, Duarte LML, Rivas EB, Cilli A, Harakava R, Galleti SR, Kitajima EW (2011) Hippeastrum mosaic virus diagnosed in hippeastrum and eucharis in Brazil. J Plant Pathol 93:643–649 Alexandre MAV, Duarte LML, Rivas EB, Cilli A, Harakava R, Galleti SR, Kitajima EW (2011) Hippeastrum mosaic virus diagnosed in hippeastrum and eucharis in Brazil. J Plant Pathol 93:643–649
4.
go back to reference Brunt AA, Atkey PT (1967) Rapid detection of narcissus yellow stripe and two other filamentous viruses in crude negatively stained narcissus sap. Rep Glasshouse Res Inst 1966:155–159 Brunt AA, Atkey PT (1967) Rapid detection of narcissus yellow stripe and two other filamentous viruses in crude negatively stained narcissus sap. Rep Glasshouse Res Inst 1966:155–159
5.
go back to reference Brunt AA (1995) Narcissus. In: Loebenstein G, Lawson RH, Brunt AA (eds) Virus and virus-like diseases of bulb and flower crops. Wiley, Chichester, pp 322–334 Brunt AA (1995) Narcissus. In: Loebenstein G, Lawson RH, Brunt AA (eds) Virus and virus-like diseases of bulb and flower crops. Wiley, Chichester, pp 322–334
6.
go back to reference Chen J, Chen JP, Langeveld SA, Derks AFLM, Adams MJ (2003) Molecular characterization of carla- and potyviruses from narcissus in China. J Phytopathol 151:1–4CrossRef Chen J, Chen JP, Langeveld SA, Derks AFLM, Adams MJ (2003) Molecular characterization of carla- and potyviruses from narcissus in China. J Phytopathol 151:1–4CrossRef
7.
go back to reference Chen J, Shi YH, Lu YW, Adams MJ, Chen JP (2006) Narcissus symptomless virus: a new carlavirus of daffodils. Arch Virol 151:2261–2267PubMedCrossRef Chen J, Shi YH, Lu YW, Adams MJ, Chen JP (2006) Narcissus symptomless virus: a new carlavirus of daffodils. Arch Virol 151:2261–2267PubMedCrossRef
8.
go back to reference Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2011) Geneious Pro v5.5.6. http://www.geneious.com Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2011) Geneious Pro v5.5.6. http://​www.​geneious.​com
9.
go back to reference Hakkaart FA (1972) Virusziekten van Nerine. Jversl Inst Plziektenk Onderz, Wageningen 1971:105–106 Hakkaart FA (1972) Virusziekten van Nerine. Jversl Inst Plziektenk Onderz, Wageningen 1971:105–106
10.
go back to reference Langeveld SA, Derks AFLM, Konicheva V, Muñoz D, Zhin-nan C, Denkova ST, Lemmers MEC, Boonekamp PM (1997) Molecular identification of potyviruses in Dutch stocks of Narcissus. Acta Hort 430:641–648 Langeveld SA, Derks AFLM, Konicheva V, Muñoz D, Zhin-nan C, Denkova ST, Lemmers MEC, Boonekamp PM (1997) Molecular identification of potyviruses in Dutch stocks of Narcissus. Acta Hort 430:641–648
11.
go back to reference Maat DZ, Huttinga H, Hakkaart FA (1978) Nerine latent virus, some properties and serological detectability in Nerine bowdenii. Neth J Plant Pathol 84:47–59CrossRef Maat DZ, Huttinga H, Hakkaart FA (1978) Nerine latent virus, some properties and serological detectability in Nerine bowdenii. Neth J Plant Pathol 84:47–59CrossRef
12.
go back to reference Morschel JR (1966). Recorded plant diseases in and outside Australia. Part 4: Forest trees and Ornamental Plants. Commonwealth Department of Health Division of Plant Quarantine, Canberra, 79 p Morschel JR (1966). Recorded plant diseases in and outside Australia. Part 4: Forest trees and Ornamental Plants. Commonwealth Department of Health Division of Plant Quarantine, Canberra, 79 p
13.
go back to reference Pearson MN, Cohen D, Cowell SJ, Jones D, Blouin A, Lebas BSM, Shiller JB, Clover GRC (2009) A survey of viruses of flower bulbs in New Zealand. Australas Plant Pathol 38:305–309CrossRef Pearson MN, Cohen D, Cowell SJ, Jones D, Blouin A, Lebas BSM, Shiller JB, Clover GRC (2009) A survey of viruses of flower bulbs in New Zealand. Australas Plant Pathol 38:305–309CrossRef
14.
go back to reference Raj SK, Snehi SK, Kumar S, Khan MS (2009) First molecular detection and identification of a potyvirus associated with severe mosaic disease of amaryllis (Hippeastrum hybridum Hort.) in India. Australas Plant Dis Note 4:50–53 Raj SK, Snehi SK, Kumar S, Khan MS (2009) First molecular detection and identification of a potyvirus associated with severe mosaic disease of amaryllis (Hippeastrum hybridum Hort.) in India. Australas Plant Dis Note 4:50–53
15.
go back to reference Roossinck MJ, Saha P, Wiley GB, Quan J, White JD, Lai H, Chavarría F, Shen G, Roe BA (2010) Ecogenomics: using massively parallel pyrosequencing to understand virus ecology. Mol Ecol 19(Suppl 1):81–88PubMedCrossRef Roossinck MJ, Saha P, Wiley GB, Quan J, White JD, Lai H, Chavarría F, Shen G, Roe BA (2010) Ecogenomics: using massively parallel pyrosequencing to understand virus ecology. Mol Ecol 19(Suppl 1):81–88PubMedCrossRef
16.
go back to reference Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi:10.1093/molbev/msr121 Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi:10.​1093/​molbev/​msr121
17.
go back to reference Valli A, Lo′pez-Moya JJ, Garcı′a JA (2007) Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae. J Gen Virol 88:1016–1028PubMedCrossRef Valli A, Lo′pez-Moya JJ, Garcı′a JA (2007) Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae. J Gen Virol 88:1016–1028PubMedCrossRef
18.
go back to reference Ward LI, Veerakone S, Tang J, Clover GRG (2009) First report of narcissus degeneration virus, narcissus late season yellows virus, and narcissus symptomless virus on Narcissus in New Zealand. Plant Dis 93:964CrossRef Ward LI, Veerakone S, Tang J, Clover GRG (2009) First report of narcissus degeneration virus, narcissus late season yellows virus, and narcissus symptomless virus on Narcissus in New Zealand. Plant Dis 93:964CrossRef
19.
go back to reference Wylie SJ, Nouri S, Coutts BA, Jones MGK (2010) Narcissus late season yellows virus and Vallota speciosa virus found infecting domestic and wild populations of Narcissus species in Australia. Arch Virol 155:1171–1174PubMedCrossRef Wylie SJ, Nouri S, Coutts BA, Jones MGK (2010) Narcissus late season yellows virus and Vallota speciosa virus found infecting domestic and wild populations of Narcissus species in Australia. Arch Virol 155:1171–1174PubMedCrossRef
20.
go back to reference Wylie SJ, Luo H, Li H, Jones MGK (2012) Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples. Arch Virol 157:271–284PubMedCrossRef Wylie SJ, Luo H, Li H, Jones MGK (2012) Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples. Arch Virol 157:271–284PubMedCrossRef
Metadata
Title
Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming
Authors
Stephen J. Wylie
Michael G. K. Jones
Publication date
01-08-2012
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 8/2012
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-012-1319-6

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