Skip to main content
Top
Published in: Archives of Virology 8/2016

01-08-2016 | Brief Report

Analysis of the coding-complete genomic sequence of groundnut ringspot virus suggests a common ancestor with tomato chlorotic spot virus

Authors: Soledad de Breuil, Joaquín Cañizares, José Miguel Blanca, Nicolás Bejerman, Verónica Trucco, Fabián Giolitti, Peio Ziarsolo, Sergio Lenardon

Published in: Archives of Virology | Issue 8/2016

Login to get access

Abstract

Groundnut ringspot virus (GRSV) and tomato chlorotic spot virus (TCSV) share biological and serological properties, so their identification is carried out by molecular methods. Their genomes consist of three segmented RNAs: L, M and S. The finding of a reassortant between these two viruses may complicate correct virus identification and requires the characterization of the complete genome. Therefore, we present for the first time the complete sequences of all the genes encoded by a GRSV isolate. The high level of sequence similarity between GRSV and TCSV (over 90 % identity) observed in the genes and proteins encoded in the M RNA support previous results indicating that these viruses probably have a common ancestor.
Literature
1.
go back to reference Almeida MMS, Orílio AF, Melo FL, Rodriguez R, Feliz A, Cayetano X, Martínez RT, Resende RO (2014) The first report of tomato chlorotic spot virus (TCSV) infecting long beans and chili peppers in the dominican republic. Plant Dis 98:1285CrossRef Almeida MMS, Orílio AF, Melo FL, Rodriguez R, Feliz A, Cayetano X, Martínez RT, Resende RO (2014) The first report of tomato chlorotic spot virus (TCSV) infecting long beans and chili peppers in the dominican republic. Plant Dis 98:1285CrossRef
2.
go back to reference Ananthakrishnan TN, Annadurai RS (2007) Thrips–tospovirus interactions: biological and molecular implications. Curr Sci 92:1083–1086 Ananthakrishnan TN, Annadurai RS (2007) Thrips–tospovirus interactions: biological and molecular implications. Curr Sci 92:1083–1086
3.
go back to reference Blanca JM, Pascual L, Ziarsolo P, Nuez F, Cañizares J (2011) ngs_backbone: a pipeline for read cleaning, mapping and snp calling using next generation sequence. BMC Genom 12:285CrossRef Blanca JM, Pascual L, Ziarsolo P, Nuez F, Cañizares J (2011) ngs_backbone: a pipeline for read cleaning, mapping and snp calling using next generation sequence. BMC Genom 12:285CrossRef
4.
go back to reference Boari AJ, Maciel-Zambolim E, Lau DD, Lima GSA, Kitajima EW, Brommonschenkel SH, Zerbini FM (2002) Detection and partial characterization of an isolate of groundnut ringspot virus in Solanum sessiliflorum. Fitopatol Bras 27:249–253CrossRef Boari AJ, Maciel-Zambolim E, Lau DD, Lima GSA, Kitajima EW, Brommonschenkel SH, Zerbini FM (2002) Detection and partial characterization of an isolate of groundnut ringspot virus in Solanum sessiliflorum. Fitopatol Bras 27:249–253CrossRef
5.
go back to reference Briese T, Calisher CH, Higgs S (2013) Viruses of the family Bunyaviridae: are all available isolates reassortants? Virology 446:207–216CrossRefPubMed Briese T, Calisher CH, Higgs S (2013) Viruses of the family Bunyaviridae: are all available isolates reassortants? Virology 446:207–216CrossRefPubMed
6.
go back to reference Hagen C, Frizzi A, Kao J, Jia L, Huang M, Zhang Y, Huang S (2011) Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses. Arch Virol 156:1209–1216CrossRefPubMed Hagen C, Frizzi A, Kao J, Jia L, Huang M, Zhang Y, Huang S (2011) Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses. Arch Virol 156:1209–1216CrossRefPubMed
7.
go back to reference Hogenhout SA, Ammar E-D, Whitfield AE, Redinbaugh MG (2008) Insect vector interactions with persistently transmitted viruses. Annu Rev Phytopathol 46:327–359CrossRefPubMed Hogenhout SA, Ammar E-D, Whitfield AE, Redinbaugh MG (2008) Insect vector interactions with persistently transmitted viruses. Annu Rev Phytopathol 46:327–359CrossRefPubMed
8.
go back to reference Kreuze JF, Perez A, Untiveros M, Quispe D, Fuentes S, Barker I, Simon R (2009) Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses. Virology 388:1–7CrossRefPubMed Kreuze JF, Perez A, Untiveros M, Quispe D, Fuentes S, Barker I, Simon R (2009) Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses. Virology 388:1–7CrossRefPubMed
9.
go back to reference Law MD, Moyer JW (1990) A tomato spotted wilt-like virus with a serologically distinct N protein. J Gen Virol 71:933–938CrossRef Law MD, Moyer JW (1990) A tomato spotted wilt-like virus with a serologically distinct N protein. J Gen Virol 71:933–938CrossRef
10.
go back to reference Lewandowskia DJ, Adkins S (2005) The tubule-forming NSm protein from tomato spotted wilt virus complements cell-to-cell and long-distance movement of Tobacco mosaic virus hybrids. Virology 342:26–37CrossRef Lewandowskia DJ, Adkins S (2005) The tubule-forming NSm protein from tomato spotted wilt virus complements cell-to-cell and long-distance movement of Tobacco mosaic virus hybrids. Virology 342:26–37CrossRef
11.
go back to reference Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth GT, Abecasis GR, Durbin R (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079CrossRefPubMedPubMedCentral Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth GT, Abecasis GR, Durbin R (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25:2078–2079CrossRefPubMedPubMedCentral
13.
go back to reference Londoño A, Capobianco H, Zhang S, Polston JE (2012) First record of tomato chlorotic spot virus in the USA. Trop Plant Pathol 37:333–338CrossRef Londoño A, Capobianco H, Zhang S, Polston JE (2012) First record of tomato chlorotic spot virus in the USA. Trop Plant Pathol 37:333–338CrossRef
14.
go back to reference Lovato FA, Nagata T, de Oliveira Resende R, de Avila AC, Inoue-Nagata AK (2004) Sequence analysis of the glycoproteins of tomato chlorotic spot virus and groundnut ringspot virus and comparison with other tospoviruses. Virus Genes 29:321–328CrossRefPubMed Lovato FA, Nagata T, de Oliveira Resende R, de Avila AC, Inoue-Nagata AK (2004) Sequence analysis of the glycoproteins of tomato chlorotic spot virus and groundnut ringspot virus and comparison with other tospoviruses. Virus Genes 29:321–328CrossRefPubMed
15.
go back to reference Margaria P, Ciuffo M, Rosa C, Turina M (2015) Evidence of a tomato spotted wilt virus resistance-breaking strain originated through natural reassortment between two evolutionary-distinct isolates. Virus Res 196:157–161CrossRefPubMed Margaria P, Ciuffo M, Rosa C, Turina M (2015) Evidence of a tomato spotted wilt virus resistance-breaking strain originated through natural reassortment between two evolutionary-distinct isolates. Virus Res 196:157–161CrossRefPubMed
16.
go back to reference Milne I, Stephen G, Bayer M, Cock PJA, Pritchard L, Cardle L, Shaw PD, Marshall D (2013) Using tablet for visual exploration of second-generation sequencing data. Brief Bioinform 14:193–202CrossRefPubMed Milne I, Stephen G, Bayer M, Cock PJA, Pritchard L, Cardle L, Shaw PD, Marshall D (2013) Using tablet for visual exploration of second-generation sequencing data. Brief Bioinform 14:193–202CrossRefPubMed
17.
go back to reference Pappu HR, Jones RAC, Jain RK (2009) Global status of tospovirus epidemics in diverse cropping systems: successes achieved and challenges ahead. Virus Res 141:219–236CrossRefPubMed Pappu HR, Jones RAC, Jain RK (2009) Global status of tospovirus epidemics in diverse cropping systems: successes achieved and challenges ahead. Virus Res 141:219–236CrossRefPubMed
18.
go back to reference Plyusnin A, Beaty BJ, Elliott RM, Goldbach R, Kormelink R, Lundkvist A, Schmaljohn CS, Tesh RB (2012) Family Bunyaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz (eds) Virus taxonomy: ninth report of the international committee on taxonomy of viruses. Elsevier Inc, London, pp 725–741 Plyusnin A, Beaty BJ, Elliott RM, Goldbach R, Kormelink R, Lundkvist A, Schmaljohn CS, Tesh RB (2012) Family Bunyaviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz (eds) Virus taxonomy: ninth report of the international committee on taxonomy of viruses. Elsevier Inc, London, pp 725–741
19.
go back to reference Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor Sambrook J, Russell D (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
20.
go back to reference Silva MS, Martins CRF, Bezerra IC, Nagata T, de Ávila AC, Resende RO (2001) Sequence diversity of NSm movement proteins of tospoviruses. Arch Virol 146:1267–1281CrossRefPubMed Silva MS, Martins CRF, Bezerra IC, Nagata T, de Ávila AC, Resende RO (2001) Sequence diversity of NSm movement proteins of tospoviruses. Arch Virol 146:1267–1281CrossRefPubMed
21.
go back to reference Sin SH, McNulty BC, Kennedy GG, Moyer JW (2005) Viral genetic determinants for thrips transmission of Tomato spotted wilt virus. Proc Natl Acad Sci USA 102:5168–5173CrossRefPubMedPubMedCentral Sin SH, McNulty BC, Kennedy GG, Moyer JW (2005) Viral genetic determinants for thrips transmission of Tomato spotted wilt virus. Proc Natl Acad Sci USA 102:5168–5173CrossRefPubMedPubMedCentral
22.
go back to reference Soellick T-R, Uhrig JF, Bucher GL, Kellmann J-W, Schreier PH (2000) The movement protein NSm of tomato spotted wilt topovirus (TSWV): RNA binding, interaction with the TSWV N protein, and identification of interacting proteins. Proc Natl Acad Sci USA 97:2373–2378CrossRefPubMedPubMedCentral Soellick T-R, Uhrig JF, Bucher GL, Kellmann J-W, Schreier PH (2000) The movement protein NSm of tomato spotted wilt topovirus (TSWV): RNA binding, interaction with the TSWV N protein, and identification of interacting proteins. Proc Natl Acad Sci USA 97:2373–2378CrossRefPubMedPubMedCentral
23.
go back to reference Sundaraj S, Srinivasan R, Culbreath AK, Riley DG, Pappu HR (2014) Host plant resistance against Tomato spotted wilt virus in peanut (Arachis hypogaea) and its impact on susceptibility to the virus, virus population genetics, and vector feeding behavior and survival. Phytopathology 104:202–210CrossRefPubMed Sundaraj S, Srinivasan R, Culbreath AK, Riley DG, Pappu HR (2014) Host plant resistance against Tomato spotted wilt virus in peanut (Arachis hypogaea) and its impact on susceptibility to the virus, virus population genetics, and vector feeding behavior and survival. Phytopathology 104:202–210CrossRefPubMed
24.
25.
go back to reference Tentchev D, Verdin E, Marchal C, Jacquet M, Aguilar JM, Moury B (2011) Evolution and structure of tomato spotted wilt virus populations: evidence of extensive reassortment and insights into emergence processes. J Gen Virol 92:961–973CrossRefPubMed Tentchev D, Verdin E, Marchal C, Jacquet M, Aguilar JM, Moury B (2011) Evolution and structure of tomato spotted wilt virus populations: evidence of extensive reassortment and insights into emergence processes. J Gen Virol 92:961–973CrossRefPubMed
26.
go back to reference Timmerman-Vaughan GM, Lister R, Cooper R, Tang J (2014) Phylogenetic analysis of New Zealand tomato spotted wilt virus isolates suggests likely incursion history scenarios and mechanisms for population evolution. Arch Virol 159:993–1003CrossRefPubMed Timmerman-Vaughan GM, Lister R, Cooper R, Tang J (2014) Phylogenetic analysis of New Zealand tomato spotted wilt virus isolates suggests likely incursion history scenarios and mechanisms for population evolution. Arch Virol 159:993–1003CrossRefPubMed
27.
go back to reference Tsompana M, Moyer JW (2008) Tospoviruses. In: Mahy BWJ, Van Regenmortel MHV (eds) Encyclopedia of virology, vol 5, 3rd edn. Elsevier Ltd, Oxford, pp 157–162CrossRef Tsompana M, Moyer JW (2008) Tospoviruses. In: Mahy BWJ, Van Regenmortel MHV (eds) Encyclopedia of virology, vol 5, 3rd edn. Elsevier Ltd, Oxford, pp 157–162CrossRef
28.
go back to reference Webster CG, Reitz SR, Perry KL, Adkins S (2011) A natural M RNA reassortant arising from two species of plant- and insect-infecting bunyaviruses and comparison of its sequence and biological properties to parental species. Virology 413:216–225CrossRefPubMed Webster CG, Reitz SR, Perry KL, Adkins S (2011) A natural M RNA reassortant arising from two species of plant- and insect-infecting bunyaviruses and comparison of its sequence and biological properties to parental species. Virology 413:216–225CrossRefPubMed
29.
go back to reference Webster CG, Frantz G, Reitz SR, Funderburk JE, Mellinger HC, McAvoy E, Turechek WW, Marshall SH, Tantiwanich Y, McGrath MT, Daughtrey ML, Adkins S (2015) Emergence of groundnut ringspot virus and tomato chlorotic spot virus in vegetables in Florida and the Southeastern United States. Phytopatology 105:388–398CrossRef Webster CG, Frantz G, Reitz SR, Funderburk JE, Mellinger HC, McAvoy E, Turechek WW, Marshall SH, Tantiwanich Y, McGrath MT, Daughtrey ML, Adkins S (2015) Emergence of groundnut ringspot virus and tomato chlorotic spot virus in vegetables in Florida and the Southeastern United States. Phytopatology 105:388–398CrossRef
30.
go back to reference Wu Q, Luo Y, Lu R, Lau N, Lai EC, Li W-X, Ding S-W (2010) Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs. Proc Natl Acad Sci USA 107:1606–1611CrossRefPubMedPubMedCentral Wu Q, Luo Y, Lu R, Lau N, Lai EC, Li W-X, Ding S-W (2010) Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs. Proc Natl Acad Sci USA 107:1606–1611CrossRefPubMedPubMedCentral
Metadata
Title
Analysis of the coding-complete genomic sequence of groundnut ringspot virus suggests a common ancestor with tomato chlorotic spot virus
Authors
Soledad de Breuil
Joaquín Cañizares
José Miguel Blanca
Nicolás Bejerman
Verónica Trucco
Fabián Giolitti
Peio Ziarsolo
Sergio Lenardon
Publication date
01-08-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 8/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-016-2912-x

Other articles of this Issue 8/2016

Archives of Virology 8/2016 Go to the issue
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Watch this official video from ACC.24. Dr. Biykem Bozkurt discuss last year's major advances in heart failure and cardiomyopathies.