Skip to main content
Top
Published in: Molecular Neurodegeneration 1/2011

Open Access 01-12-2011 | Short report

Alzheimer-specific variants in the 3'UTR of Amyloid precursor protein affect microRNA function

Authors: Charlotte Delay, Frédéric Calon, Paul Mathews, Sébastien S Hébert

Published in: Molecular Neurodegeneration | Issue 1/2011

Login to get access

Abstract

Background

APP expression misregulation can cause genetic Alzheimer's disease (AD). Recent evidences support the hypothesis that polymorphisms located in microRNA (miRNA) target sites could influence the risk of developing neurodegenerative disorders such as Parkinson's disease (PD) and frontotemporal dementia. Recently, a number of single nucleotide polymorphisms (SNPs) located in the 3'UTR of APP have been found in AD patients with family history of dementia. Because miRNAs have previously been implicated in APP expression regulation, we set out to determine whether these polymorphisms could affect miRNA function and therefore APP levels.

Results

Bioinformatics analysis identified twelve putative miRNA bindings sites located in or near the APP 3'UTR variants T117C, A454G and A833C. Among those candidates, seven miRNAs, including miR-20a, miR-17, miR-147, miR-655, miR-323-3p, miR-644, and miR-153 could regulate APP expression in vitro and under physiological conditions in cells. Using luciferase-based assays, we could show that the T117C variant inhibited miR-147 binding, whereas the A454G variant increased miR-20a binding, consequently having opposite effects on APP expression.

Conclusions

Taken together, our results provide proof-of-principle that APP 3'UTR polymorphisms could affect AD risk through modulation of APP expression regulation, and set the stage for further association studies in genetic and sporadic AD.
Appendix
Available only for authorised users
Literature
1.
go back to reference De Strooper B: Proteases and proteolysis in Alzheimer disease: a multifactorial view on the disease process. Physiological reviews. 2010, 90: 465-94. 10.1152/physrev.00023.2009.PubMedCrossRef De Strooper B: Proteases and proteolysis in Alzheimer disease: a multifactorial view on the disease process. Physiological reviews. 2010, 90: 465-94. 10.1152/physrev.00023.2009.PubMedCrossRef
2.
go back to reference Mucke L, Masliah E, Yu GQ, Mallory M, Rockenstein EM, Tatsuno G, Hu K, Kholodenko D, Johnson-Wood K, McConlogue L: High-level neuronal expression of abeta 1-42 in wild-type human amyloid protein precursor transgenic mice: synaptotoxicity without plaque formation. The Journal of neuroscience: the official journal of the Society for Neuroscience. 2000, 20: 4050-8. Mucke L, Masliah E, Yu GQ, Mallory M, Rockenstein EM, Tatsuno G, Hu K, Kholodenko D, Johnson-Wood K, McConlogue L: High-level neuronal expression of abeta 1-42 in wild-type human amyloid protein precursor transgenic mice: synaptotoxicity without plaque formation. The Journal of neuroscience: the official journal of the Society for Neuroscience. 2000, 20: 4050-8.
3.
go back to reference D'Hooge R, Nagels G, Westland CE, Mucke L, De Deyn PP: Spatial learning deficit in mice expressing human 751-amino acid beta-amyloid precursor protein. Neuroreport. 1996, 7: 2807-11. 10.1097/00001756-199611040-00080.PubMedCrossRef D'Hooge R, Nagels G, Westland CE, Mucke L, De Deyn PP: Spatial learning deficit in mice expressing human 751-amino acid beta-amyloid precursor protein. Neuroreport. 1996, 7: 2807-11. 10.1097/00001756-199611040-00080.PubMedCrossRef
4.
go back to reference Theuns J, Brouwers N, Engelborghs S, Sleegers K, Bogaerts V, Corsmit E, De Pooter T, van Duijn CM, De Deyn PP, Van Broeckhoven C: Promoter mutations that increase amyloid precursor-protein expression are associated with Alzheimer disease. American journal of human genetics. 2006, 78: 936-46. 10.1086/504044.PubMedPubMedCentralCrossRef Theuns J, Brouwers N, Engelborghs S, Sleegers K, Bogaerts V, Corsmit E, De Pooter T, van Duijn CM, De Deyn PP, Van Broeckhoven C: Promoter mutations that increase amyloid precursor-protein expression are associated with Alzheimer disease. American journal of human genetics. 2006, 78: 936-46. 10.1086/504044.PubMedPubMedCentralCrossRef
5.
go back to reference Podlisny MB, Lee G, Selkoe DJ: Gene dosage of the amyloid beta precursor protein in Alzheimer's disease. Science (New York, N.Y.). 1987, 238: 669-71. 10.1126/science.2960019.CrossRef Podlisny MB, Lee G, Selkoe DJ: Gene dosage of the amyloid beta precursor protein in Alzheimer's disease. Science (New York, N.Y.). 1987, 238: 669-71. 10.1126/science.2960019.CrossRef
6.
go back to reference Rovelet-Lecrux A, Hannequin D, Raux G, Le Meur N, Laquerrière A, Vital A, Dumanchin C, Feuillette S, Brice A, Vercelletto M, Dubas F, Frebourg T, Campion D: APP locus duplication causes autosomal dominant early-onset Alzheimer disease with cerebral amyloid angiopathy. Nature genetics. 2006, 38: 24-6. 10.1038/ng1718.PubMedCrossRef Rovelet-Lecrux A, Hannequin D, Raux G, Le Meur N, Laquerrière A, Vital A, Dumanchin C, Feuillette S, Brice A, Vercelletto M, Dubas F, Frebourg T, Campion D: APP locus duplication causes autosomal dominant early-onset Alzheimer disease with cerebral amyloid angiopathy. Nature genetics. 2006, 38: 24-6. 10.1038/ng1718.PubMedCrossRef
7.
go back to reference Hébert SS, De Strooper B: Alterations of the microRNA network cause neurodegenerative disease. Trends in neurosciences. 2009, 32: 199-206. 10.1016/j.tins.2008.12.003.PubMedCrossRef Hébert SS, De Strooper B: Alterations of the microRNA network cause neurodegenerative disease. Trends in neurosciences. 2009, 32: 199-206. 10.1016/j.tins.2008.12.003.PubMedCrossRef
8.
10.
go back to reference Hébert SS, Horré K, Nicolaï L, Bergmans B, Papadopoulou AS, Delacourte A, De Strooper B: MicroRNA regulation of Alzheimer's Amyloid precursor protein expression. Neurobiology of disease. 2009, 33: 422-8. 10.1016/j.nbd.2008.11.009.PubMedCrossRef Hébert SS, Horré K, Nicolaï L, Bergmans B, Papadopoulou AS, Delacourte A, De Strooper B: MicroRNA regulation of Alzheimer's Amyloid precursor protein expression. Neurobiology of disease. 2009, 33: 422-8. 10.1016/j.nbd.2008.11.009.PubMedCrossRef
11.
go back to reference Fan X, Liu Y, Jiang J, Ma Z, Wu H, Liu T, Liu M, Li X, Tang H: miR-20a promotes proliferation and invasion by targeting APP in human ovarian cancer cells. Acta biochimica et biophysica Sinica. 2010, 42: 318-24. 10.1093/abbs/gmq026.PubMedCrossRef Fan X, Liu Y, Jiang J, Ma Z, Wu H, Liu T, Liu M, Li X, Tang H: miR-20a promotes proliferation and invasion by targeting APP in human ovarian cancer cells. Acta biochimica et biophysica Sinica. 2010, 42: 318-24. 10.1093/abbs/gmq026.PubMedCrossRef
12.
go back to reference Patel N, Hoang D, Miller N, Ansaloni S, Huang Q, Rogers JT, Lee JC, Saunders AJ: MicroRNAs can regulate human APP levels. Molecular neurodegeneration. 2008, 3: 10-10.1186/1750-1326-3-10.PubMedPubMedCentralCrossRef Patel N, Hoang D, Miller N, Ansaloni S, Huang Q, Rogers JT, Lee JC, Saunders AJ: MicroRNAs can regulate human APP levels. Molecular neurodegeneration. 2008, 3: 10-10.1186/1750-1326-3-10.PubMedPubMedCentralCrossRef
13.
go back to reference Vilardo E, Barbato C, Ciotti MT, Cogoni C, Ruberti F: MicroRNA-101 regulates amyloid precursor protein expression in hippocampal neurons. The Journal of biological chemistry. 2010, 285: 18344-18351. 10.1074/jbc.M110.112664.PubMedPubMedCentralCrossRef Vilardo E, Barbato C, Ciotti MT, Cogoni C, Ruberti F: MicroRNA-101 regulates amyloid precursor protein expression in hippocampal neurons. The Journal of biological chemistry. 2010, 285: 18344-18351. 10.1074/jbc.M110.112664.PubMedPubMedCentralCrossRef
14.
go back to reference Long JM, Lahiri DK: MicroRNA-101 downregulates Alzheimer's amyloid-β precursor protein levels in human cell cultures and is differentially expressed. Biochemical and biophysical research communications. 2010 Long JM, Lahiri DK: MicroRNA-101 downregulates Alzheimer's amyloid-β precursor protein levels in human cell cultures and is differentially expressed. Biochemical and biophysical research communications. 2010
15.
go back to reference Liu W, Liu C, Zhu J, Shu P, Yin B, Gong Y, Qiang B, Yuan J, Peng X: MicroRNA-16 targets amyloid precursor protein to potentially modulate Alzheimer's-associated pathogenesis in SAMP8 mice. Neurobiology of aging. 2010 Liu W, Liu C, Zhu J, Shu P, Yin B, Gong Y, Qiang B, Yuan J, Peng X: MicroRNA-16 targets amyloid precursor protein to potentially modulate Alzheimer's-associated pathogenesis in SAMP8 mice. Neurobiology of aging. 2010
16.
go back to reference Hébert SS, Horré K, Nicolaï L, Papadopoulou AS, Mandemakers W, Silahtaroglu AN, Kauppinen S, Delacourte A, De Strooper B: Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proceedings of the National Academy of Sciences of the United States of America. 2008, 105: 6415-20. 10.1073/pnas.0710263105.PubMedPubMedCentralCrossRef Hébert SS, Horré K, Nicolaï L, Papadopoulou AS, Mandemakers W, Silahtaroglu AN, Kauppinen S, Delacourte A, De Strooper B: Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proceedings of the National Academy of Sciences of the United States of America. 2008, 105: 6415-20. 10.1073/pnas.0710263105.PubMedPubMedCentralCrossRef
17.
go back to reference Nunez-Iglesias J, Liu CC, Morgan TE, Finch CE, Zhou XJ: Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. PloS one. 2010, 5: e8898-10.1371/journal.pone.0008898.PubMedPubMedCentralCrossRef Nunez-Iglesias J, Liu CC, Morgan TE, Finch CE, Zhou XJ: Joint genome-wide profiling of miRNA and mRNA expression in Alzheimer's disease cortex reveals altered miRNA regulation. PloS one. 2010, 5: e8898-10.1371/journal.pone.0008898.PubMedPubMedCentralCrossRef
18.
go back to reference Wang G, van Der Walt JM, Mayhew G, Li YJ, Züchner S, Scott WK, Martin ER, Vance JM: Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. American journal of human genetics. 2008, 82: 283-9. 10.1016/j.ajhg.2007.09.021.PubMedPubMedCentralCrossRef Wang G, van Der Walt JM, Mayhew G, Li YJ, Züchner S, Scott WK, Martin ER, Vance JM: Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. American journal of human genetics. 2008, 82: 283-9. 10.1016/j.ajhg.2007.09.021.PubMedPubMedCentralCrossRef
19.
go back to reference Rademakers R, Eriksen JL, Baker M, Robinson T, Ahmed Z, Lincoln SJ, Finch N, Rutherford NJ, Crook RJ, Josephs KA, Boeve BF, Knopman DS, Petersen RC, Parisi JE, Caselli RJ, Wszolek ZK, Uitti RJ, Feldman H, Hutton ML, Mackenzie IR, Graff-Radford NR, Dickson DW: Common variation in the miR-659 binding-site of GRN is a major risk factor for TDP43-positive frontotemporal dementia. Human molecular genetics. 2008, 17: 3631-42. 10.1093/hmg/ddn257.PubMedPubMedCentralCrossRef Rademakers R, Eriksen JL, Baker M, Robinson T, Ahmed Z, Lincoln SJ, Finch N, Rutherford NJ, Crook RJ, Josephs KA, Boeve BF, Knopman DS, Petersen RC, Parisi JE, Caselli RJ, Wszolek ZK, Uitti RJ, Feldman H, Hutton ML, Mackenzie IR, Graff-Radford NR, Dickson DW: Common variation in the miR-659 binding-site of GRN is a major risk factor for TDP43-positive frontotemporal dementia. Human molecular genetics. 2008, 17: 3631-42. 10.1093/hmg/ddn257.PubMedPubMedCentralCrossRef
20.
go back to reference Bettens K, Brouwers N, Engelborghs S, Van Miegroet H, De Deyn PP, Theuns J, Sleegers K, Van Broeckhoven C: APP and BACE1 miRNA genetic variability has no major role in risk for Alzheimer disease. Human mutation. 2009, 30: 1207-13. 10.1002/humu.21027.PubMedCrossRef Bettens K, Brouwers N, Engelborghs S, Van Miegroet H, De Deyn PP, Theuns J, Sleegers K, Van Broeckhoven C: APP and BACE1 miRNA genetic variability has no major role in risk for Alzheimer disease. Human mutation. 2009, 30: 1207-13. 10.1002/humu.21027.PubMedCrossRef
21.
go back to reference Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ: miRBase: tools for microRNA genomics. Nucleic acids research. 2008, 36: D154-8. 10.1093/nar/gkn221.PubMedPubMedCentralCrossRef Griffiths-Jones S, Saini HK, van Dongen S, Enright AJ: miRBase: tools for microRNA genomics. Nucleic acids research. 2008, 36: D154-8. 10.1093/nar/gkn221.PubMedPubMedCentralCrossRef
22.
go back to reference Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005, 120: 15-20. 10.1016/j.cell.2004.12.035.PubMedCrossRef Lewis BP, Burge CB, Bartel DP: Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 2005, 120: 15-20. 10.1016/j.cell.2004.12.035.PubMedCrossRef
23.
24.
go back to reference Bimonte H a, Granholm A-CE, Seo H, Isacson O: Spatial memory testing decreases hippocampal amyloid precursor protein in young, but not aged, female rats. Neuroscience letters. 2002, 328: 50-4. 10.1016/S0304-3940(02)00442-1.PubMedCrossRef Bimonte H a, Granholm A-CE, Seo H, Isacson O: Spatial memory testing decreases hippocampal amyloid precursor protein in young, but not aged, female rats. Neuroscience letters. 2002, 328: 50-4. 10.1016/S0304-3940(02)00442-1.PubMedCrossRef
25.
go back to reference Nishimura I: Upregulation and antiapoptotic role of endogenous Alzheimer amyloid precursor protein in dorsal root ganglion neurons. Experimental Cell Research. 2003, 286: 241-251. 10.1016/S0014-4827(03)00066-1.PubMedCrossRef Nishimura I: Upregulation and antiapoptotic role of endogenous Alzheimer amyloid precursor protein in dorsal root ganglion neurons. Experimental Cell Research. 2003, 286: 241-251. 10.1016/S0014-4827(03)00066-1.PubMedCrossRef
Metadata
Title
Alzheimer-specific variants in the 3'UTR of Amyloid precursor protein affect microRNA function
Authors
Charlotte Delay
Frédéric Calon
Paul Mathews
Sébastien S Hébert
Publication date
01-12-2011
Publisher
BioMed Central
Published in
Molecular Neurodegeneration / Issue 1/2011
Electronic ISSN: 1750-1326
DOI
https://doi.org/10.1186/1750-1326-6-70

Other articles of this Issue 1/2011

Molecular Neurodegeneration 1/2011 Go to the issue