Skip to main content
Key Specialties
Cardiology Diabetology Endocrinology Gastroenterology Geriatrics and Gerontology Gynecology and Obstetrics Hematology Infectious Disease Internal Medicine Nephrology Neurology Oncology Pediatrics Respiratory Medicine Rheumatology Surgery
Congress Coverage
2024 ACC Congress 2023 ESMO Congress 2023 EASD Congress 2023 ERS Congress 2023 ESC Congress
Clinical Collections
Advances in Alzheimer’s

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.
ADVANCED SEARCH
Log in
Top
Archives of Virology
Published in: Archives of Virology 10/2016

01-10-2016 | Brief Report

A novel member of the Tombusviridae from a wild legume, Gompholobium preissii

Authors: Shu Hui Koh, Jamie W. L. Ong, Ryan Admiraal, Krishnapillai Sivasithamparam, Michael G. K. Jones, Stephen J. Wylie

Published in: Archives of Virology | Issue 10/2016

Login to get access

Abstract

As part of an investigation into viruses of wild plants in Australia, a contiguous sequence of 3935 nucleotides was obtained after shotgun sequencing of RNA isolated from an asymptomatic wild legume, Gompholobium preissii. Phylogenetic analysis of the sequence revealed that it most closely resembled that of Trailing lespedeza virus 1 (TLV1), a virus isolated from a wild legume in America. The proposed virus, named Gompholobium virus A, and TLV1 are genetically closest to viruses in the genera Alphacarmovirus and Pelarspovirus, family Tombusviridae, but they share features distinguishing them from both groups.
Appendix
Available only for authorised users
Literature
1.
2.
Alonso M, Borja M (2005) High incidence of Pelargonium line pattern virus infecting asymptomatic Pelargonium spp. in Spain. Eur J Plant Pathol 112:95–100CrossRef
3.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410CrossRefPubMed
4.
Batten JS, Turina M, Scholthof K-BG (2006) Panicovirus accumulation is governed by two membrane-associated proteins with a newly identified conserved motif that contributes to pathogenicity. Virol J 3:12CrossRefPubMedPubMedCentral
5.
Castaño A, Ruiz L, Hernández C (2009) Insights into the translational regulation of biologically active open reading frames of Pelargonium line pattern virus. Virology 386:417–426CrossRefPubMed
6.
Castaño A, Ruiz L, Elena SF, Hernández C (2011) Population differentiation and selective constraints in Pelargonium line pattern virus. Virus Res 155:274–282CrossRefPubMed
7.
Chappill JA, Wilkins CF, Crisp MD (2008) Taxonomic revision of Gompholobium (Leguminosae: Mirbelieae). Aust Syst Bot 21:67–151CrossRef
8.
Dolja VV, Koonin EV (1991) Phylogeny of capsid proteins of small icosahedral RNA plant viruses. J Gen Virol 72:1481–1486CrossRef
9.
Fabian MR, White KA (2004) 5′–3′ RNA-RNA interaction facilitates cap-and poly (A) tail-independent translation of tomato bushy stunt virus mRNA: a potential common mechanism for Tombusviridae. J Biol Chem 279:28862–28872CrossRefPubMed
10.
Gruber AR, Lorenz R, Bernhart SH, Neuböck R, Hofacker IL (2008) The Vienna RNA websuite. Nucleic Acids Res 36:70–74CrossRef
11.
Gunawardene CD, Jaluba K, White KA (2015) Conserved motifs in a tombusvirus polymerase modulate genome replication, subgenomic transcription, and amplification of defective interfering RNAs. J Virol 89:3236–3246CrossRefPubMedPubMedCentral
12.
Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C (2012) Geneious basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28:1647–1649CrossRefPubMedPubMedCentral
13.
King A, Adams J, Carstens E, Lefkowitz E (2012) Virus taxonomy: classification and nomenclature of viruses: ninth report of the ICTV. Elsevier/Academic Press, Amsterdam
14.
Li XH, Carrington JC (1995) Complementation of tobacco etch potyvirus mutants by active RNA polymerase expressed in transgenic cells. Proc Natl Acad Sci USA 92:457–461CrossRefPubMedPubMedCentral
15.
Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463CrossRefPubMedPubMedCentral
16.
Miller WA, Koev G (2000) Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology 273:1–8CrossRefPubMed
17.
Morris T, Dodds J (1979) Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858CrossRef
18.
Ong J, Phillips R, Dixon K, Jones MG, Wylie S (2016) Characterization of the first two viruses described from wild populations of hammer orchids (Drakaea spp.) in Australia. Plant Pathol 65:163–172CrossRef
19.
Rico P, Hernández C (2004) Complete nucleotide sequence and genome organization of Pelargonium flower break virus. Arch Virol 149:641–651CrossRefPubMed
20.
Roossinck MJ, Martin DP, Roumagnac P (2015) Plant virus metagenomics: advances in virus discovery. Phytopathology 105:716–727CrossRefPubMed
21.
Russo M, Burgyan J, Martelli GP (1994) Molecular biology of Tombusviridae. In: Karl Maramorosch FAM, Aaron JS (eds) Adv virus Res. Academic Press, Cambridge, pp 381–428
22.
Scheets K, Redinbaugh MG (2006) Infectious cDNA transcripts of maize necrotic streak virus: infectivity and translational characteristics. Virology 350:171–183CrossRefPubMed
23.
Scheets K, Blinkova O, Melcher U, Palmer MW, Wiley GB, Ding T, Roe BA (2011) Detection of members of the Tombusviridae in the Tallgrass Prairie Preserve, Osage County, Oklahoma, USA. Virus Res 160:256–263CrossRefPubMed
24.
Scheets K, Jordan R, White KA, Hernández C (2015) Pelarspovirus, a proposed new genus in the family Tombusviridae. Arch Virol 160:2385–2393CrossRefPubMed
25.
Simon AE, Miller WA (2013) 3′ cap-independent translation enhancers of plant viruses. Ann Rev Microbiol 67:21CrossRef
26.
Stuart G, Moffett K, Bozarth R (2004) A whole genome perspective on the phylogeny of the plant virus family Tombusviridae. Arch Virol 149:1595–1610CrossRefPubMed
27.
Vincent SJ, Coutts BA, Jones RA (2014) Effects of introduced and indigenous viruses on native plants: exploring their disease causing potential at the agro-ecological interface. PLoS One 9:e91224CrossRefPubMedPubMedCentral
28.
Wylie SJ, Li H, Jones MG (2014) Yellow tailflower mild mottle virus: a new tobamovirus described from Anthocercis littorea (Solanaceae) in Western Australia. Arch Virol 159:791–795CrossRefPubMed
29.
Wylie SJ, Zhang C, Long V, Roossinck MJ, Koh SH, Jones MG, Iqbal S, Li H (2015) Differential responses to virus challenge of laboratory and wild accessions of Australian species of Nicotiana, and comparative analysis of RDR1 gene sequences. PLoS One 10:e0121787CrossRefPubMedPubMedCentral
Metadata
Title
A novel member of the Tombusviridae from a wild legume, Gompholobium preissii
Authors
Shu Hui Koh
Jamie W. L. Ong
Ryan Admiraal
Krishnapillai Sivasithamparam
Michael G. K. Jones
Stephen J. Wylie
Publication date
01-10-2016
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 10/2016
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-016-2992-7

Other articles of this Issue 10/2016

Archives of Virology 10/2016 Go to the issue

Brief Report

Impaired cellular energy metabolism contributes to bluetongue-virus-induced autophagy

Original Article

Localization of immunodominant epitopes within the “a” determinant of hepatitis B surface antigen using monoclonal antibodies

Original Article

Isolation, identification and evolution analysis of a novel subgroup of avian leukosis virus isolated from a local Chinese yellow broiler in South China

Original Article

The entry of cucumber mosaic virus into cucumber xylem is facilitated by co-infection with zucchini yellow mosaic virus

Original Article

Complete genotyping of unusual species A rotavirus G12P[11] and G10P[14] isolates and evidence of frequent in vivo reassortment among the rotaviruses detected in children with diarrhea in Kolkata, India, during 2014

Original Article

Immunobiological properties of influenza A (H7N9) hemagglutinin and neuraminidase proteins
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Reserve your place

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

Read more

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine

Highlights from the ACC 2024 Congress

Year in Review: Pediatric cardiology

Pediatric Cardiology Video

Watch Dr. Anne Marie Valente present the last year's highlights in pediatric and congenital heart disease in the official ACC.24 Year in Review session.

Year in Review: Pulmonary vascular disease

Cardiopulmonary Comorbidity Video

The last year's highlights in pulmonary vascular disease are presented by Dr. Jane Leopold in this official video from ACC.24.

Year in Review: Valvular heart disease

Valvular Heart Disease Video

Watch Prof. William Zoghbi present the last year's highlights in valvular heart disease from the official ACC.24 Year in Review session.

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.

ACC 2024 Congress Coverage

Year in Review: Heart failure and cardiomyopathies

Heart Failure Video

Watch this official video from ACC.24. Dr. Biykem Bozkurt discusses last year's major advances in heart failure and cardiomyopathies.

Watch now

Semaglutide benefits people with type 2 diabetes and obesity-related heart failure

16-04-2024 Type 2 Diabetes News

Incentivised to exercise

11-04-2024 Lifestyle Modifications News

New intervention for STEMI-related cardiogenic shock

10-04-2024 Myocardial Infarction News

» View more highlights on the ACC 2024 congress hub page

Image Credits