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Published in: Malaria Journal 1/2012

Open Access 01-12-2012 | Methodology

A framework for assessing the risk of resistance for anti-malarials in development

Authors: Xavier C Ding, David Ubben, Timothy NC Wells

Published in: Malaria Journal | Issue 1/2012

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Abstract

Resistance is a constant challenge for anti-infective drug development. Since they kill sensitive organisms, anti-infective agents are bound to exert an evolutionary pressure toward the emergence and spread of resistance mechanisms, if such resistance can arise by stochastic mutation events. New classes of medicines under development must be designed or selected to stay ahead in this vicious circle of resistance control. This involves both circumventing existing resistance mechanisms and selecting molecules which are resilient against the development and spread of resistance. Cell-based screening methods have led to a renaissance of new classes of anti-malarial medicines, offering us the potential to select and modify molecules based on their resistance potential. To that end, a standardized in vitro methodology to assess quantitatively these characteristics in Plasmodium falciparum during the early phases of the drug development process has been developed and is presented here. It allows the identification of anti-malarial compounds with overt resistance risks and the prioritization of the most robust ones. The integration of this strategy in later stages of development, registration, and deployment is also discussed.
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Literature
1.
go back to reference Mita T, Tanabe K, Kita K: Spread and evolution of Plasmodium falciparum drug resistance. Parasitol Int. 2009, 58: 201-209. 10.1016/j.parint.2009.04.004.CrossRefPubMed Mita T, Tanabe K, Kita K: Spread and evolution of Plasmodium falciparum drug resistance. Parasitol Int. 2009, 58: 201-209. 10.1016/j.parint.2009.04.004.CrossRefPubMed
2.
go back to reference World Health Organization: Global report on antimalarial drug efficacy and drug resistance: 2000–2010. 2010, WHO, Geneva, 121- World Health Organization: Global report on antimalarial drug efficacy and drug resistance: 2000–2010. 2010, WHO, Geneva, 121-
3.
go back to reference Looareesuwan S, Viravan C, Webster HK, Kyle DE, Hutchinson DB, Canfield CJ: Clinical studies of atovaquone, alone or in combination with other antimalarial drugs, for treatment of acute uncomplicated malaria in Thailand. AmJTrop Med Hyg. 1996, 54: 62- Looareesuwan S, Viravan C, Webster HK, Kyle DE, Hutchinson DB, Canfield CJ: Clinical studies of atovaquone, alone or in combination with other antimalarial drugs, for treatment of acute uncomplicated malaria in Thailand. AmJTrop Med Hyg. 1996, 54: 62-
4.
go back to reference Korsinczky M, Chen N, Kotecka B, Saul A, Rieckmann K, Cheng Q: Mutations in Plasmodium falciparum cytochrome b that are associated with atovaquone resistance are located at a putative drug-binding site. Antimicrob Agents Chemother. 2000, 44: 2100-2108. 10.1128/AAC.44.8.2100-2108.2000.PubMedCentralCrossRefPubMed Korsinczky M, Chen N, Kotecka B, Saul A, Rieckmann K, Cheng Q: Mutations in Plasmodium falciparum cytochrome b that are associated with atovaquone resistance are located at a putative drug-binding site. Antimicrob Agents Chemother. 2000, 44: 2100-2108. 10.1128/AAC.44.8.2100-2108.2000.PubMedCentralCrossRefPubMed
5.
go back to reference Ding XC, Beck H-P, Raso G: Plasmodium sensitivity to artemisinins: magic bullets hit elusive targets. Trends Parasitol. 2011, 27: 73-81. 10.1016/j.pt.2010.11.006.CrossRefPubMed Ding XC, Beck H-P, Raso G: Plasmodium sensitivity to artemisinins: magic bullets hit elusive targets. Trends Parasitol. 2011, 27: 73-81. 10.1016/j.pt.2010.11.006.CrossRefPubMed
6.
go back to reference Noedl H, Se Y, Schaecher K, Smith BL, Socheat D, Fukuda MM, Artemisinin Resistance in Cambodia 1 (ARC1) Study Consortium: Evidence of artemisinin-resistant malaria in Western Cambodia. N Engl J Med. 2008, 359: 2619-2620. 10.1056/NEJMc0805011.CrossRefPubMed Noedl H, Se Y, Schaecher K, Smith BL, Socheat D, Fukuda MM, Artemisinin Resistance in Cambodia 1 (ARC1) Study Consortium: Evidence of artemisinin-resistant malaria in Western Cambodia. N Engl J Med. 2008, 359: 2619-2620. 10.1056/NEJMc0805011.CrossRefPubMed
7.
go back to reference Phyo AP, Nkhoma S, Stepniewska K, Ashley EA, Nair S, McGready R, Ler Moo C, Al-Saai S, Dondorp AM, Lwin KM, Singhasivanon P, Day NPJ, White NJ, Anderson TJC, Nosten F: Emergence of artemisinin-resistant malaria on the western border of Thailand: a longitudinal study. Lancet. 2012, 379: 1960-1966. 10.1016/S0140-6736(12)60484-X.PubMedCentralCrossRefPubMed Phyo AP, Nkhoma S, Stepniewska K, Ashley EA, Nair S, McGready R, Ler Moo C, Al-Saai S, Dondorp AM, Lwin KM, Singhasivanon P, Day NPJ, White NJ, Anderson TJC, Nosten F: Emergence of artemisinin-resistant malaria on the western border of Thailand: a longitudinal study. Lancet. 2012, 379: 1960-1966. 10.1016/S0140-6736(12)60484-X.PubMedCentralCrossRefPubMed
8.
go back to reference Cheeseman IH, Miller BA, Nair S, Nkhoma S, Tan A, Tan JC, Saai Al S, Phyo AP, Moo CL, Lwin KM, McGready R, Ashley E, Imwong M, Stepniewska K, Yi P, Dondorp AM, Mayxay M, Newton PN, White NJ, Nosten F, Ferdig MT, Anderson TJC: A major genome region underlying artemisinin resistance in malaria. Science. 2012, 336: 79-82. 10.1126/science.1215966.PubMedCentralCrossRefPubMed Cheeseman IH, Miller BA, Nair S, Nkhoma S, Tan A, Tan JC, Saai Al S, Phyo AP, Moo CL, Lwin KM, McGready R, Ashley E, Imwong M, Stepniewska K, Yi P, Dondorp AM, Mayxay M, Newton PN, White NJ, Nosten F, Ferdig MT, Anderson TJC: A major genome region underlying artemisinin resistance in malaria. Science. 2012, 336: 79-82. 10.1126/science.1215966.PubMedCentralCrossRefPubMed
9.
go back to reference Barnes KI, Little F, Mabuza A, Mngomezulu N, Govere J, Durrheim D, Roper C, Watkins B, White NJ: Increased gametocytemia after treatment: an early parasitological indicator of emerging sulfadoxine-pyrimethamine resistance in falciparum malaria. J Infect Dis. 2008, 197: 1605-1613. 10.1086/587645.CrossRefPubMed Barnes KI, Little F, Mabuza A, Mngomezulu N, Govere J, Durrheim D, Roper C, Watkins B, White NJ: Increased gametocytemia after treatment: an early parasitological indicator of emerging sulfadoxine-pyrimethamine resistance in falciparum malaria. J Infect Dis. 2008, 197: 1605-1613. 10.1086/587645.CrossRefPubMed
10.
go back to reference White N: Strategies for the prevention of antimalarial drug resistance: Rationale for combination chemotherapy for malaria. Parasitol Today. 1996, 12: 399-401. 10.1016/0169-4758(96)10055-7.CrossRefPubMed White N: Strategies for the prevention of antimalarial drug resistance: Rationale for combination chemotherapy for malaria. Parasitol Today. 1996, 12: 399-401. 10.1016/0169-4758(96)10055-7.CrossRefPubMed
11.
go back to reference Price RN, Nosten F: Drug resistant falciparum malaria: clinical consequences and strategies for prevention. Drug Resist Updat. 2001, 4: 187-196. 10.1054/drup.2001.0195.CrossRefPubMed Price RN, Nosten F: Drug resistant falciparum malaria: clinical consequences and strategies for prevention. Drug Resist Updat. 2001, 4: 187-196. 10.1054/drup.2001.0195.CrossRefPubMed
12.
go back to reference Foster KR, Grundmann H: Do we need to put society first? The potential for tragedy in antimicrobial resistance. PLoS Med. 2006, 3: e29-10.1371/journal.pmed.0030029.PubMedCentralCrossRefPubMed Foster KR, Grundmann H: Do we need to put society first? The potential for tragedy in antimicrobial resistance. PLoS Med. 2006, 3: e29-10.1371/journal.pmed.0030029.PubMedCentralCrossRefPubMed
13.
go back to reference Boni MF, Smith DL, Laxminarayan R: Benefits of using multiple first-line therapies against malaria. Proc Natl Acad Sci USA. 2008, 105: 14216-14221. 10.1073/pnas.0804628105.PubMedCentralCrossRefPubMed Boni MF, Smith DL, Laxminarayan R: Benefits of using multiple first-line therapies against malaria. Proc Natl Acad Sci USA. 2008, 105: 14216-14221. 10.1073/pnas.0804628105.PubMedCentralCrossRefPubMed
14.
go back to reference White NJ, Pongtavornpinyo W: The de novo selection of drug-resistant malaria parasites. Proc R Soc B: Biol Sci. 2003, 270: 545-554. 10.1098/rspb.2002.2241.CrossRef White NJ, Pongtavornpinyo W: The de novo selection of drug-resistant malaria parasites. Proc R Soc B: Biol Sci. 2003, 270: 545-554. 10.1098/rspb.2002.2241.CrossRef
15.
go back to reference Mackinnon MJ, Hastings IM: The evolution of multiple drug resistance in malaria parasites. Trans R Soc Trop Med Hyg. 1998, 92: 188-195. 10.1016/S0035-9203(98)90745-3.CrossRefPubMed Mackinnon MJ, Hastings IM: The evolution of multiple drug resistance in malaria parasites. Trans R Soc Trop Med Hyg. 1998, 92: 188-195. 10.1016/S0035-9203(98)90745-3.CrossRefPubMed
16.
go back to reference Smith DL, Klein EY, McKenzie FE, Laxminarayan R: Prospective strategies to delay the evolution of anti-malarial drug resistance: weighing the uncertainty. Malar J. 2010, 9: 217-10.1186/1475-2875-9-217.PubMedCentralCrossRefPubMed Smith DL, Klein EY, McKenzie FE, Laxminarayan R: Prospective strategies to delay the evolution of anti-malarial drug resistance: weighing the uncertainty. Malar J. 2010, 9: 217-10.1186/1475-2875-9-217.PubMedCentralCrossRefPubMed
17.
go back to reference Reilly HB, Wang H, Steuter JA, Marx AM, Ferdig MT: Quantitative dissection of clone-specific growth rates in cultured malaria parasites. Int J Parasitol. 2007, 37: 1599-1607. 10.1016/j.ijpara.2007.05.003.PubMedCentralCrossRefPubMed Reilly HB, Wang H, Steuter JA, Marx AM, Ferdig MT: Quantitative dissection of clone-specific growth rates in cultured malaria parasites. Int J Parasitol. 2007, 37: 1599-1607. 10.1016/j.ijpara.2007.05.003.PubMedCentralCrossRefPubMed
18.
go back to reference Peterson DS, Milhous WK, Wellems TE: Molecular basis of differential resistance to cycloguanil and pyrimethamine in Plasmodium falciparum malaria. Proc Natl Acad Sci USA. 1990, 87: 3018-3022. 10.1073/pnas.87.8.3018.PubMedCentralCrossRefPubMed Peterson DS, Milhous WK, Wellems TE: Molecular basis of differential resistance to cycloguanil and pyrimethamine in Plasmodium falciparum malaria. Proc Natl Acad Sci USA. 1990, 87: 3018-3022. 10.1073/pnas.87.8.3018.PubMedCentralCrossRefPubMed
19.
go back to reference Duraisingh MT, Cowman AF: Contribution of the pfmdr1 gene to antimalarial drug-resistance. Acta Trop. 2005, 94: 181-190. 10.1016/j.actatropica.2005.04.008.CrossRefPubMed Duraisingh MT, Cowman AF: Contribution of the pfmdr1 gene to antimalarial drug-resistance. Acta Trop. 2005, 94: 181-190. 10.1016/j.actatropica.2005.04.008.CrossRefPubMed
20.
go back to reference Wang P, Read M, Sims PF, Hyde JE: Sulfadoxine resistance in the human malaria parasite Plasmodium falciparum is determined by mutations in dihydropteroate synthetase and an additional factor associated with folate utilization. Mol Microbiol. 1997, 23: 979-986. 10.1046/j.1365-2958.1997.2821646.x.CrossRefPubMed Wang P, Read M, Sims PF, Hyde JE: Sulfadoxine resistance in the human malaria parasite Plasmodium falciparum is determined by mutations in dihydropteroate synthetase and an additional factor associated with folate utilization. Mol Microbiol. 1997, 23: 979-986. 10.1046/j.1365-2958.1997.2821646.x.CrossRefPubMed
21.
go back to reference Triglia T, Wang P, Sims PF, Hyde JE, Cowman AF: Allelic exchange at the endogenous genomic locus in Plasmodium falciparum proves the role of dihydropteroate synthase in sulfadoxine-resistant malaria. EMBO J. 1998, 17: 3807-3815. 10.1093/emboj/17.14.3807.PubMedCentralCrossRefPubMed Triglia T, Wang P, Sims PF, Hyde JE, Cowman AF: Allelic exchange at the endogenous genomic locus in Plasmodium falciparum proves the role of dihydropteroate synthase in sulfadoxine-resistant malaria. EMBO J. 1998, 17: 3807-3815. 10.1093/emboj/17.14.3807.PubMedCentralCrossRefPubMed
22.
go back to reference Witkowski B, Berry A, Benoit-Vical F: Resistance to antimalarial compounds: Methods and applications. Drug Resist Updat. 2009, 12: 42-50. 10.1016/j.drup.2009.01.001.CrossRefPubMed Witkowski B, Berry A, Benoit-Vical F: Resistance to antimalarial compounds: Methods and applications. Drug Resist Updat. 2009, 12: 42-50. 10.1016/j.drup.2009.01.001.CrossRefPubMed
23.
go back to reference Cerutti Junior C, Marques C, Alencar FE, Durlacher RR, Alween A, Segurado AA, Pang LW, Zalis MG: Antimalarial drug susceptibility testing of Plasmodium falciparum in Brazil using a radioisotope method. Mem Inst Oswaldo Cruz. 1999, 94: 803-809. 10.1590/S0074-02761999000600017.CrossRefPubMed Cerutti Junior C, Marques C, Alencar FE, Durlacher RR, Alween A, Segurado AA, Pang LW, Zalis MG: Antimalarial drug susceptibility testing of Plasmodium falciparum in Brazil using a radioisotope method. Mem Inst Oswaldo Cruz. 1999, 94: 803-809. 10.1590/S0074-02761999000600017.CrossRefPubMed
24.
go back to reference Rottmann M, McNamara C, Yeung BKS, Lee MCS, Zou B, Russell B, Seitz P, Plouffe DM, Dharia NV, Tan J, Cohen SB, Spencer KR, Gonzalez-Paez GE, Lakshminarayana SB, Goh A, Suwanarusk R, Jegla T, Schmitt EK, Beck HP, Brun R, Nosten F, Renia L, Dartois V, Keller TH, Fidock DA, Winzeler EA, Diagana TT: Spiroindolones, a potent compound class for the treatment of malaria. Science. 2010, 329: 1175-1180. 10.1126/science.1193225.PubMedCentralCrossRefPubMed Rottmann M, McNamara C, Yeung BKS, Lee MCS, Zou B, Russell B, Seitz P, Plouffe DM, Dharia NV, Tan J, Cohen SB, Spencer KR, Gonzalez-Paez GE, Lakshminarayana SB, Goh A, Suwanarusk R, Jegla T, Schmitt EK, Beck HP, Brun R, Nosten F, Renia L, Dartois V, Keller TH, Fidock DA, Winzeler EA, Diagana TT: Spiroindolones, a potent compound class for the treatment of malaria. Science. 2010, 329: 1175-1180. 10.1126/science.1193225.PubMedCentralCrossRefPubMed
25.
go back to reference Ponnudurai T, Leeuwenberg AD, Meuwissen JH: Chloroquine sensitivity of isolates of Plasmodium falciparum adapted to in vitro culture. Trop Geogr Med. 1981, 33: 50-54.PubMed Ponnudurai T, Leeuwenberg AD, Meuwissen JH: Chloroquine sensitivity of isolates of Plasmodium falciparum adapted to in vitro culture. Trop Geogr Med. 1981, 33: 50-54.PubMed
26.
go back to reference Oduola AM, Weatherly NF, Bowdre JH, Desjardins RE: Plasmodium falciparum: cloning by single-erythrocyte micromanipulation and heterogeneity in vitro. Exp Parasitol. 1988, 66: 86-95. 10.1016/0014-4894(88)90053-7.CrossRefPubMed Oduola AM, Weatherly NF, Bowdre JH, Desjardins RE: Plasmodium falciparum: cloning by single-erythrocyte micromanipulation and heterogeneity in vitro. Exp Parasitol. 1988, 66: 86-95. 10.1016/0014-4894(88)90053-7.CrossRefPubMed
27.
go back to reference Bhasin VK, Trager W: Gametocyte-forming and non-gametocyte-forming clones of Plasmodium falciparum. AmJTrop Med Hyg. 1984, 33: 534-537. Bhasin VK, Trager W: Gametocyte-forming and non-gametocyte-forming clones of Plasmodium falciparum. AmJTrop Med Hyg. 1984, 33: 534-537.
28.
go back to reference Burkot TR, Williams JL, Schneider I: Infectivity to mosquitoes of Plasmodium falciparum clones grown in vitro from the same isolate. Trans R Soc Trop Med Hyg. 1984, 78: 339-341. 10.1016/0035-9203(84)90114-7.CrossRefPubMed Burkot TR, Williams JL, Schneider I: Infectivity to mosquitoes of Plasmodium falciparum clones grown in vitro from the same isolate. Trans R Soc Trop Med Hyg. 1984, 78: 339-341. 10.1016/0035-9203(84)90114-7.CrossRefPubMed
29.
go back to reference Guinet F, Dvorak JA, Fujioka H, Keister DB, Muratova O, Kaslow DC, Aikawa M, Vaidya AB, Wellems TE: A developmental defect in Plasmodium falciparum male gametogenesis. J Cell Biol. 1996, 135: 269-278. 10.1083/jcb.135.1.269.CrossRefPubMed Guinet F, Dvorak JA, Fujioka H, Keister DB, Muratova O, Kaslow DC, Aikawa M, Vaidya AB, Wellems TE: A developmental defect in Plasmodium falciparum male gametogenesis. J Cell Biol. 1996, 135: 269-278. 10.1083/jcb.135.1.269.CrossRefPubMed
30.
go back to reference Rosario V: Cloning of naturally occurring mixed infections of malaria parasites. Science. 1981, 212: 1037-1038. 10.1126/science.7015505.CrossRefPubMed Rosario V: Cloning of naturally occurring mixed infections of malaria parasites. Science. 1981, 212: 1037-1038. 10.1126/science.7015505.CrossRefPubMed
31.
go back to reference Thaithong S, Beale GH: Resistance of ten Thai isolates of Plasmodium falciparum to chloroquine and pyrimethamine by in vitro tests. Trans R Soc Trop Med Hyg. 1981, 75: 271-273. 10.1016/0035-9203(81)90333-3.CrossRefPubMed Thaithong S, Beale GH: Resistance of ten Thai isolates of Plasmodium falciparum to chloroquine and pyrimethamine by in vitro tests. Trans R Soc Trop Med Hyg. 1981, 75: 271-273. 10.1016/0035-9203(81)90333-3.CrossRefPubMed
32.
go back to reference Eastham GM, Rieckmann KH: The activity of pyrimethamine and sulphadoxine against Plasmodium falciparum determined by the in vitro microtechnique. Trans R Soc Trop Med Hyg. 1983, 77: 91-93. 10.1016/0035-9203(83)90026-3.CrossRefPubMed Eastham GM, Rieckmann KH: The activity of pyrimethamine and sulphadoxine against Plasmodium falciparum determined by the in vitro microtechnique. Trans R Soc Trop Med Hyg. 1983, 77: 91-93. 10.1016/0035-9203(83)90026-3.CrossRefPubMed
33.
go back to reference Valderramos SG, Valderramos J-C, Musset L, Purcell LA, Mercereau-Puijalon O, Legrand E, Fidock DA: Identification of a mutant PfCRT-mediated chloroquine tolerance phenotype in Plasmodium falciparum. PLoS Pathog. 2010, 6: e1000887-10.1371/journal.ppat.1000887.PubMedCentralCrossRefPubMed Valderramos SG, Valderramos J-C, Musset L, Purcell LA, Mercereau-Puijalon O, Legrand E, Fidock DA: Identification of a mutant PfCRT-mediated chloroquine tolerance phenotype in Plasmodium falciparum. PLoS Pathog. 2010, 6: e1000887-10.1371/journal.ppat.1000887.PubMedCentralCrossRefPubMed
34.
go back to reference Fidock DA, Nomura T, Talley AK, Cooper RA, Dzekunov SM, Ferdig MT, Ursos LM, Sidhu AB, Naudé B, Deitsch KW, Su XZ, Wootton JC, Roepe PD, Wellems TE: Mutations in the P. falciparum digestive vacuole transmembrane protein PfCRT and evidence for their role in chloroquine resistance. Mol Cell. 2000, 6: 861-871. 10.1016/S1097-2765(05)00077-8.PubMedCentralCrossRefPubMed Fidock DA, Nomura T, Talley AK, Cooper RA, Dzekunov SM, Ferdig MT, Ursos LM, Sidhu AB, Naudé B, Deitsch KW, Su XZ, Wootton JC, Roepe PD, Wellems TE: Mutations in the P. falciparum digestive vacuole transmembrane protein PfCRT and evidence for their role in chloroquine resistance. Mol Cell. 2000, 6: 861-871. 10.1016/S1097-2765(05)00077-8.PubMedCentralCrossRefPubMed
35.
go back to reference Van Tyne D, Park DJ, Schaffner SF, Neafsey DE, Angelino E, Cortese JF, Barnes KG, Rosen DM, Lukens AK, Daniels RF, Milner DA, Johnson CA, Shlyakhter I, Grossman SR, Becker JS, Yamins D, Karlsson EK, Ndiaye D, Sarr O, Mboup S, Happi C, Furlotte NA, Eskin E, Kang HM, Hartl DL, Birren BW, Wiegand RC, Lander ES, Wirth DF, Volkman SK, Sabeti PC: Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum. PLoS Genet. 2011, 7: e1001383-10.1371/journal.pgen.1001383.PubMedCentralCrossRefPubMed Van Tyne D, Park DJ, Schaffner SF, Neafsey DE, Angelino E, Cortese JF, Barnes KG, Rosen DM, Lukens AK, Daniels RF, Milner DA, Johnson CA, Shlyakhter I, Grossman SR, Becker JS, Yamins D, Karlsson EK, Ndiaye D, Sarr O, Mboup S, Happi C, Furlotte NA, Eskin E, Kang HM, Hartl DL, Birren BW, Wiegand RC, Lander ES, Wirth DF, Volkman SK, Sabeti PC: Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum. PLoS Genet. 2011, 7: e1001383-10.1371/journal.pgen.1001383.PubMedCentralCrossRefPubMed
36.
go back to reference Chavchich M, Gerena L, Peters J, Chen N, Cheng Q, Kyle DE: Role of pfmdr1 amplification and expression in induction of resistance to artemisinin derivatives in Plasmodium falciparum. Antimicrob Agents Chemother. 2010, 54: 2455-2464. 10.1128/AAC.00947-09.PubMedCentralCrossRefPubMed Chavchich M, Gerena L, Peters J, Chen N, Cheng Q, Kyle DE: Role of pfmdr1 amplification and expression in induction of resistance to artemisinin derivatives in Plasmodium falciparum. Antimicrob Agents Chemother. 2010, 54: 2455-2464. 10.1128/AAC.00947-09.PubMedCentralCrossRefPubMed
37.
go back to reference Rohrbach P, Sanchez CP, Hayton K, Friedrich O, Patel J, Sidhu ABS, Ferdig MT, Fidock DA, Lanzer M: Genetic linkage of pfmdr1 with food vacuolar solute import in Plasmodium falciparum. EMBO J. 2006, 25: 3000-3011. 10.1038/sj.emboj.7601203.PubMedCentralCrossRefPubMed Rohrbach P, Sanchez CP, Hayton K, Friedrich O, Patel J, Sidhu ABS, Ferdig MT, Fidock DA, Lanzer M: Genetic linkage of pfmdr1 with food vacuolar solute import in Plasmodium falciparum. EMBO J. 2006, 25: 3000-3011. 10.1038/sj.emboj.7601203.PubMedCentralCrossRefPubMed
38.
go back to reference Sirawaraporn W, Sathitkul T, Sirawaraporn R, Yuthavong Y, Santi DV: Antifolate-resistant mutants of Plasmodium falciparum dihydrofolate reductase. Proc Natl Acad Sci USA. 1997, 94: 1124-1129. 10.1073/pnas.94.4.1124.PubMedCentralCrossRefPubMed Sirawaraporn W, Sathitkul T, Sirawaraporn R, Yuthavong Y, Santi DV: Antifolate-resistant mutants of Plasmodium falciparum dihydrofolate reductase. Proc Natl Acad Sci USA. 1997, 94: 1124-1129. 10.1073/pnas.94.4.1124.PubMedCentralCrossRefPubMed
39.
go back to reference Triglia T, Cowman AF: Primary structure and expression of the dihydropteroate synthetase gene of Plasmodium falciparum. Proc Natl Acad Sci USA. 1994, 91: 7149-7153. 10.1073/pnas.91.15.7149.PubMedCentralCrossRefPubMed Triglia T, Cowman AF: Primary structure and expression of the dihydropteroate synthetase gene of Plasmodium falciparum. Proc Natl Acad Sci USA. 1994, 91: 7149-7153. 10.1073/pnas.91.15.7149.PubMedCentralCrossRefPubMed
40.
go back to reference Triglia T, Menting JG, Wilson C, Cowman AF: Mutations in dihydropteroate synthase are responsible for sulfone and sulfonamide resistance in Plasmodium falciparum. Proc Natl Acad Sci USA. 1997, 94: 13944-13949. 10.1073/pnas.94.25.13944.PubMedCentralCrossRefPubMed Triglia T, Menting JG, Wilson C, Cowman AF: Mutations in dihydropteroate synthase are responsible for sulfone and sulfonamide resistance in Plasmodium falciparum. Proc Natl Acad Sci USA. 1997, 94: 13944-13949. 10.1073/pnas.94.25.13944.PubMedCentralCrossRefPubMed
41.
go back to reference Zhou Z, Poe AC, Limor J, Grady KK, Goldman I, McCollum AM, Escalante AA, Barnwell JW, Udhayakumar V: Pyrosequencing, a high-throughput method for detecting single nucleotide polymorphisms in the dihydrofolate reductase and dihydropteroate synthetase genes of Plasmodium falciparum. J Clin Microbiol. 2006, 44: 3900-3910. 10.1128/JCM.01209-06.PubMedCentralCrossRefPubMed Zhou Z, Poe AC, Limor J, Grady KK, Goldman I, McCollum AM, Escalante AA, Barnwell JW, Udhayakumar V: Pyrosequencing, a high-throughput method for detecting single nucleotide polymorphisms in the dihydrofolate reductase and dihydropteroate synthetase genes of Plasmodium falciparum. J Clin Microbiol. 2006, 44: 3900-3910. 10.1128/JCM.01209-06.PubMedCentralCrossRefPubMed
42.
go back to reference Marfurt J, Chalfein F, Prayoga P, Wabiser F, Kenangalem E, Piera KA, MacHunter B, Tjitra E, Anstey NM, Price RN: Ex vivo drug susceptibility of ferroquine against chloroquine-resistant isolates of Plasmodium falciparum and P. vivax. Antimicrob Agents Chemother. 2011, 55: 4461-4464. 10.1128/AAC.01375-10.PubMedCentralCrossRefPubMed Marfurt J, Chalfein F, Prayoga P, Wabiser F, Kenangalem E, Piera KA, MacHunter B, Tjitra E, Anstey NM, Price RN: Ex vivo drug susceptibility of ferroquine against chloroquine-resistant isolates of Plasmodium falciparum and P. vivax. Antimicrob Agents Chemother. 2011, 55: 4461-4464. 10.1128/AAC.01375-10.PubMedCentralCrossRefPubMed
43.
go back to reference Paget-McNicol SM: Estimation of mutation and switching rates in Plasmodium falciparum genes. PhD thesis. 2001, School of Population Health, The University of Queensland Paget-McNicol SM: Estimation of mutation and switching rates in Plasmodium falciparum genes. PhD thesis. 2001, School of Population Health, The University of Queensland
44.
go back to reference Paget-McNicol S, Saul A: Mutation rates in the dihydrofolate reductase gene of Plasmodium falciparum. Parasitology. 2001, 122: 497-505.CrossRefPubMed Paget-McNicol S, Saul A: Mutation rates in the dihydrofolate reductase gene of Plasmodium falciparum. Parasitology. 2001, 122: 497-505.CrossRefPubMed
45.
go back to reference Donald F, Conrad MEH: The population genetics of structural variation. Nat Genet. 2007, 39: S30-10.1038/ng2042.CrossRef Donald F, Conrad MEH: The population genetics of structural variation. Nat Genet. 2007, 39: S30-10.1038/ng2042.CrossRef
46.
go back to reference Cheeseman IH, Gomez-Escobar N, Carret CK, Ivens A, Stewart LB, Tetteh KK, Conway DJ: Gene copy number variation throughout the Plasmodium falciparum genome. BMC Genomics. 2009, 10: 353-10.1186/1471-2164-10-353.PubMedCentralCrossRefPubMed Cheeseman IH, Gomez-Escobar N, Carret CK, Ivens A, Stewart LB, Tetteh KK, Conway DJ: Gene copy number variation throughout the Plasmodium falciparum genome. BMC Genomics. 2009, 10: 353-10.1186/1471-2164-10-353.PubMedCentralCrossRefPubMed
47.
go back to reference Rathod PK, McErlean T, Lee PC: Variations in frequencies of drug resistance in Plasmodium falciparum. Proc Natl Acad Sci USA. 1997, 94: 9389-9393. 10.1073/pnas.94.17.9389.PubMedCentralCrossRefPubMed Rathod PK, McErlean T, Lee PC: Variations in frequencies of drug resistance in Plasmodium falciparum. Proc Natl Acad Sci USA. 1997, 94: 9389-9393. 10.1073/pnas.94.17.9389.PubMedCentralCrossRefPubMed
48.
go back to reference Istvan ES, Dharia NV, Bopp SE, Gluzman I, Winzeler EA, Goldberg DE: Validation of isoleucine utilization targets in Plasmodium falciparum. Proc Natl Acad Sci USA. 2011, 108: 1627-10.1073/pnas.1011560108.PubMedCentralCrossRefPubMed Istvan ES, Dharia NV, Bopp SE, Gluzman I, Winzeler EA, Goldberg DE: Validation of isoleucine utilization targets in Plasmodium falciparum. Proc Natl Acad Sci USA. 2011, 108: 1627-10.1073/pnas.1011560108.PubMedCentralCrossRefPubMed
49.
go back to reference Eastman RT, Dharia NV, Winzeler EA, Fidock DA: Piperaquine resistance is associated with a copy number variation on chromosome 5 in drug-pressured Plasmodium falciparum parasites. Antimicrob Agents Chemother. 2011, 55: 3908-3916. 10.1128/AAC.01793-10.PubMedCentralCrossRefPubMed Eastman RT, Dharia NV, Winzeler EA, Fidock DA: Piperaquine resistance is associated with a copy number variation on chromosome 5 in drug-pressured Plasmodium falciparum parasites. Antimicrob Agents Chemother. 2011, 55: 3908-3916. 10.1128/AAC.01793-10.PubMedCentralCrossRefPubMed
50.
go back to reference Trotta RF, Brown ML, Terrell JC, Geyer JA: Defective DNA repair as a potential mechanism for the rapid development of drug resistance in Plasmodium falciparum. Biochemistry. 2004, 43: 4885-4891. 10.1021/bi0499258.CrossRefPubMed Trotta RF, Brown ML, Terrell JC, Geyer JA: Defective DNA repair as a potential mechanism for the rapid development of drug resistance in Plasmodium falciparum. Biochemistry. 2004, 43: 4885-4891. 10.1021/bi0499258.CrossRefPubMed
51.
go back to reference Sanz LM, Jimenez-Diaz MB, Crespo B, De-Cozar C, Almela MJ, Angulo-Barturen I, Castaneda P, Ibanez J, Fernandez EP, Ferrer S, Herreros E, Lozano S, Martinez MS, Rueda L, Burrows JN, Garcia-Bustos JF, Gamo FJ: Cyclopropyl carboxamides, a chemically novel class of antimalarial agents identified in a phenotypic screen. Antimicrob Agents Chemother. 2011, 55: 5740-5745. 10.1128/AAC.05188-11.PubMedCentralCrossRefPubMed Sanz LM, Jimenez-Diaz MB, Crespo B, De-Cozar C, Almela MJ, Angulo-Barturen I, Castaneda P, Ibanez J, Fernandez EP, Ferrer S, Herreros E, Lozano S, Martinez MS, Rueda L, Burrows JN, Garcia-Bustos JF, Gamo FJ: Cyclopropyl carboxamides, a chemically novel class of antimalarial agents identified in a phenotypic screen. Antimicrob Agents Chemother. 2011, 55: 5740-5745. 10.1128/AAC.05188-11.PubMedCentralCrossRefPubMed
52.
go back to reference Cooper RA, Ferdig MT, Su X-Z, Ursos LMB, Mu J, Nomura T, Fujioka H, Fidock DA, Roepe PD, Wellems TE: Alternative mutations at position 76 of the vacuolar transmembrane protein PfCRT are associated with chloroquine resistance and unique stereospecific quinine and quinidine responses in Plasmodium falciparum. Mol Pharmacol. 2002, 61: 35-42. 10.1124/mol.61.1.35.CrossRefPubMed Cooper RA, Ferdig MT, Su X-Z, Ursos LMB, Mu J, Nomura T, Fujioka H, Fidock DA, Roepe PD, Wellems TE: Alternative mutations at position 76 of the vacuolar transmembrane protein PfCRT are associated with chloroquine resistance and unique stereospecific quinine and quinidine responses in Plasmodium falciparum. Mol Pharmacol. 2002, 61: 35-42. 10.1124/mol.61.1.35.CrossRefPubMed
53.
go back to reference Rosario VE, Hall R, Walliker D, Beale GH: Persistence of drug-resistant malaria parasites. Lancet. 1978, 1: 185-187.CrossRefPubMed Rosario VE, Hall R, Walliker D, Beale GH: Persistence of drug-resistant malaria parasites. Lancet. 1978, 1: 185-187.CrossRefPubMed
54.
go back to reference Walliker D, Hunt P, Babiker H: Fitness of drug-resistant malaria parasites. Acta Trop. 2005, 94: 251-259. 10.1016/j.actatropica.2005.04.005.CrossRefPubMed Walliker D, Hunt P, Babiker H: Fitness of drug-resistant malaria parasites. Acta Trop. 2005, 94: 251-259. 10.1016/j.actatropica.2005.04.005.CrossRefPubMed
55.
go back to reference Huijben S, Nelson WA, Wargo AR, Sim DG, Drew DR, Read AF: Chemotherapy, within-host ecology and the fitness of drug-resistant malaria parasites. Evolution. 2010, 64: 2952-2968.PubMedCentralPubMed Huijben S, Nelson WA, Wargo AR, Sim DG, Drew DR, Read AF: Chemotherapy, within-host ecology and the fitness of drug-resistant malaria parasites. Evolution. 2010, 64: 2952-2968.PubMedCentralPubMed
56.
go back to reference Hunt P, Fawcett R, Carter R, Walliker D: Estimating SNP proportions in populations of malaria parasites by sequencing: validation and applications. Mol Biochem Parasitol. 2005, 143: 173-182. 10.1016/j.molbiopara.2005.05.014.CrossRefPubMed Hunt P, Fawcett R, Carter R, Walliker D: Estimating SNP proportions in populations of malaria parasites by sequencing: validation and applications. Mol Biochem Parasitol. 2005, 143: 173-182. 10.1016/j.molbiopara.2005.05.014.CrossRefPubMed
57.
go back to reference Cheesman SJ, de Roode JC, Read AF, Carter R: Real-time quantitative PCR for analysis of genetically mixed infections of malaria parasites: technique validation and applications. Mol Biochem Parasitol. 2003, 131: 83-91. 10.1016/S0166-6851(03)00195-6.CrossRefPubMed Cheesman SJ, de Roode JC, Read AF, Carter R: Real-time quantitative PCR for analysis of genetically mixed infections of malaria parasites: technique validation and applications. Mol Biochem Parasitol. 2003, 131: 83-91. 10.1016/S0166-6851(03)00195-6.CrossRefPubMed
58.
go back to reference Peters JM, Chen N, Gatton M, Korsinczky M, Fowler EV, Manzetti S, Saul A, Cheng Q: Mutations in cytochrome b resulting in atovaquone resistance are associated with loss of fitness inPlasmodium falciparum. Antimicrob Agents Chemother. 2002, 46: 2435-2441. 10.1128/AAC.46.8.2435-2441.2002.PubMedCentralCrossRefPubMed Peters JM, Chen N, Gatton M, Korsinczky M, Fowler EV, Manzetti S, Saul A, Cheng Q: Mutations in cytochrome b resulting in atovaquone resistance are associated with loss of fitness inPlasmodium falciparum. Antimicrob Agents Chemother. 2002, 46: 2435-2441. 10.1128/AAC.46.8.2435-2441.2002.PubMedCentralCrossRefPubMed
59.
go back to reference Delves M, Plouffe D, Scheurer C, Meister S, Wittlin S, Winzeler EA, Sinden RE, Leroy D: The activities of current antimalarial drugs on the life cycle stages of Plasmodium: a comparative study with human and rodent parasites. PLoS Med. 2012, 9: e1001169-10.1371/journal.pmed.1001169.PubMedCentralCrossRefPubMed Delves M, Plouffe D, Scheurer C, Meister S, Wittlin S, Winzeler EA, Sinden RE, Leroy D: The activities of current antimalarial drugs on the life cycle stages of Plasmodium: a comparative study with human and rodent parasites. PLoS Med. 2012, 9: e1001169-10.1371/journal.pmed.1001169.PubMedCentralCrossRefPubMed
60.
go back to reference Peters W: The chemotherapy of rodent malaria. LVII. Drug combinations to impede the selection of drug resistance, Part 1: Which model is appropriate?. Ann Trop Med Parasitol. 1999, 93: 569-587. 10.1080/00034989958087.CrossRefPubMed Peters W: The chemotherapy of rodent malaria. LVII. Drug combinations to impede the selection of drug resistance, Part 1: Which model is appropriate?. Ann Trop Med Parasitol. 1999, 93: 569-587. 10.1080/00034989958087.CrossRefPubMed
61.
go back to reference Srivastava IK, Morrisey JM, Darrouzet E, Daldal F, Vaidya AB: Resistance mutations reveal the atovaquone-binding domain of cytochrome b in malaria parasites. Mol Microbiol. 1999, 33: 704-711. 10.1046/j.1365-2958.1999.01515.x.CrossRefPubMed Srivastava IK, Morrisey JM, Darrouzet E, Daldal F, Vaidya AB: Resistance mutations reveal the atovaquone-binding domain of cytochrome b in malaria parasites. Mol Microbiol. 1999, 33: 704-711. 10.1046/j.1365-2958.1999.01515.x.CrossRefPubMed
62.
go back to reference Anderson T, Nkhoma S, Ecker A, Fidock D: How can we identify parasite genes that underlie antimalarial drug resistance?. Pharmacogenomics. 2011, 12: 59-85. 10.2217/pgs.10.165.PubMedCentralCrossRefPubMed Anderson T, Nkhoma S, Ecker A, Fidock D: How can we identify parasite genes that underlie antimalarial drug resistance?. Pharmacogenomics. 2011, 12: 59-85. 10.2217/pgs.10.165.PubMedCentralCrossRefPubMed
63.
go back to reference Dharia NV, Sidhu ABS, Cassera MB, Westenberger SJ, Bopp SE, Eastman RT, Plouffe D, Batalov S, Park DJ, Volkman SK, Wirth DF, Zhou Y, Fidock DA, Winzeler EA: Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum. Genome Biol. 2009, 10: R21-10.1186/gb-2009-10-2-r21.PubMedCentralCrossRefPubMed Dharia NV, Sidhu ABS, Cassera MB, Westenberger SJ, Bopp SE, Eastman RT, Plouffe D, Batalov S, Park DJ, Volkman SK, Wirth DF, Zhou Y, Fidock DA, Winzeler EA: Use of high-density tiling microarrays to identify mutations globally and elucidate mechanisms of drug resistance in Plasmodium falciparum. Genome Biol. 2009, 10: R21-10.1186/gb-2009-10-2-r21.PubMedCentralCrossRefPubMed
64.
go back to reference Su X, Ferdig MT, Huang Y, Huynh CQ, Liu A, You J, Wootton JC, Wellems TE: A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. Science. 1999, 286: 1351-1353. 10.1126/science.286.5443.1351.CrossRefPubMed Su X, Ferdig MT, Huang Y, Huynh CQ, Liu A, You J, Wootton JC, Wellems TE: A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. Science. 1999, 286: 1351-1353. 10.1126/science.286.5443.1351.CrossRefPubMed
65.
go back to reference Manske M, Miotto O, Campino S, Auburn S, Almagro-Garcia J, Maslen G, O’Brien J, Djimdé A, Doumbo O, Zongo I, Ouédraogo JB, Michon P, Mueller I, Siba P, Nzila A, Borrmann S, Kiara SM, Marsh K, Jiang H, Su X-Z, Amaratunga C, Fairhurst R, Socheat D, Nosten F, Imwong M, White NJ, Sanders M, Anastasi E, Alcock D, Drury E, Oyola S, Quail MA, Turner DJ, Ruano-Rubio V, Jyothi D, Amenga-Etego L, Hubbart C, Jeffreys A, Rowlands K, Sutherland C, Roper C, Mangano V, Modiano D, Tan JC, Ferdig MT, Amambua-Ngwa A, Conway DJ, Takala-Harrison S, Plowe CV, Rayner JC, Rockett KA, Clark TG, Newbold CI, Berriman M, MacInnis B, Kwiatkowski DP: Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature. 2012, 487: 375-379.PubMedCentralCrossRefPubMed Manske M, Miotto O, Campino S, Auburn S, Almagro-Garcia J, Maslen G, O’Brien J, Djimdé A, Doumbo O, Zongo I, Ouédraogo JB, Michon P, Mueller I, Siba P, Nzila A, Borrmann S, Kiara SM, Marsh K, Jiang H, Su X-Z, Amaratunga C, Fairhurst R, Socheat D, Nosten F, Imwong M, White NJ, Sanders M, Anastasi E, Alcock D, Drury E, Oyola S, Quail MA, Turner DJ, Ruano-Rubio V, Jyothi D, Amenga-Etego L, Hubbart C, Jeffreys A, Rowlands K, Sutherland C, Roper C, Mangano V, Modiano D, Tan JC, Ferdig MT, Amambua-Ngwa A, Conway DJ, Takala-Harrison S, Plowe CV, Rayner JC, Rockett KA, Clark TG, Newbold CI, Berriman M, MacInnis B, Kwiatkowski DP: Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature. 2012, 487: 375-379.PubMedCentralCrossRefPubMed
66.
go back to reference Volkman SK, Neafsey DE, Schaffner SF, Park DJ, Wirth DF: Harnessing genomics and genome biology to understand malaria biology. Nat Rev Genet. 2012, 13: 315-328.CrossRefPubMed Volkman SK, Neafsey DE, Schaffner SF, Park DJ, Wirth DF: Harnessing genomics and genome biology to understand malaria biology. Nat Rev Genet. 2012, 13: 315-328.CrossRefPubMed
67.
go back to reference Sanz LM, Crespo B, de Cozar C, Ding XC, Llergo JL, Burrows JN, Garcia-Bustos JF, Gamo F-J: P. falciparum in vitro killing rates allow to discriminate between different antimalarial mode-of-action. PLoS One. 2012, 7: e30949-10.1371/journal.pone.0030949.PubMedCentralCrossRefPubMed Sanz LM, Crespo B, de Cozar C, Ding XC, Llergo JL, Burrows JN, Garcia-Bustos JF, Gamo F-J: P. falciparum in vitro killing rates allow to discriminate between different antimalarial mode-of-action. PLoS One. 2012, 7: e30949-10.1371/journal.pone.0030949.PubMedCentralCrossRefPubMed
68.
go back to reference Cho S, Kim S, Kim Y, Park Y: Optical imaging techniques for the study of malaria. Trends Biotechnol. 2012, 30: 71-79. 10.1016/j.tibtech.2011.08.004.CrossRefPubMed Cho S, Kim S, Kim Y, Park Y: Optical imaging techniques for the study of malaria. Trends Biotechnol. 2012, 30: 71-79. 10.1016/j.tibtech.2011.08.004.CrossRefPubMed
69.
go back to reference Sibley CH, Guerin PJ, Ringwald P: Monitoring antimalarial resistance: launching a cooperative effort. Trends Parasitol. 2010, 26: 221-224. 10.1016/j.pt.2010.02.008.CrossRefPubMed Sibley CH, Guerin PJ, Ringwald P: Monitoring antimalarial resistance: launching a cooperative effort. Trends Parasitol. 2010, 26: 221-224. 10.1016/j.pt.2010.02.008.CrossRefPubMed
74.
go back to reference Burrows JN, Leroy D, Lotharius J, Waterson D: Challenges in antimalarial drug discovery. Future Med Chem. 2011, 3: 1401-1412. 10.4155/fmc.11.91.CrossRefPubMed Burrows JN, Leroy D, Lotharius J, Waterson D: Challenges in antimalarial drug discovery. Future Med Chem. 2011, 3: 1401-1412. 10.4155/fmc.11.91.CrossRefPubMed
75.
go back to reference Cammack N: Exploiting malaria drug resistance to our advantage. Science. 2011, 333: 705-706. 10.1126/science.1210875.CrossRefPubMed Cammack N: Exploiting malaria drug resistance to our advantage. Science. 2011, 333: 705-706. 10.1126/science.1210875.CrossRefPubMed
Metadata
Title
A framework for assessing the risk of resistance for anti-malarials in development
Authors
Xavier C Ding
David Ubben
Timothy NC Wells
Publication date
01-12-2012
Publisher
BioMed Central
Published in
Malaria Journal / Issue 1/2012
Electronic ISSN: 1475-2875
DOI
https://doi.org/10.1186/1475-2875-11-292

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