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Published in: BMC Medical Imaging 1/2019

Open Access 01-12-2019 | Ultrasound | Research article

Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images

Authors: Marly Guimarães Fernandes Costa, João Paulo Mendes Campos, Gustavo de Aquino e Aquino, Wagner Coelho de Albuquerque Pereira, Cícero Ferreira Fernandes Costa Filho

Published in: BMC Medical Imaging | Issue 1/2019

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Abstract

Background

Outlining lesion contours in Ultra Sound (US) breast images is an important step in breast cancer diagnosis. Malignant lesions infiltrate the surrounding tissue, generating irregular contours, with spiculation and angulated margins, whereas benign lesions produce contours with a smooth outline and elliptical shape. In breast imaging, the majority of the existing publications in the literature focus on using Convolutional Neural Networks (CNNs) for segmentation and classification of lesions in mammographic images. In this study our main objective is to assess the ability of CNNs in detecting contour irregularities in breast lesions in US images.

Methods

In this study we compare the performance of two CNNs with Direct Acyclic Graph (DAG) architecture and one CNN with a series architecture for breast lesion segmentation in US images. DAG and series architectures are both feedforward networks. The difference is that a DAG architecture could have more than one path between the first layer and end layer, whereas a series architecture has only one path from the beginning layer to the end layer. The CNN architectures were evaluated with two datasets.

Results

With the more complex DAG architecture, the following mean values were obtained for the metrics used to evaluate the segmented contours: global accuracy: 0.956; IOU: 0.876; F measure: 68.77%; Dice coefficient: 0.892.

Conclusion

The CNN DAG architecture shows the best metric values used for quantitatively evaluating the segmented contours compared with the gold-standard contours. The segmented contours obtained with this architecture also have more details and irregularities, like the gold-standard contours.
Literature
1.
go back to reference Siegel RL, Miller KD, Jemal A. Cancer statics 2017. CA Cancer J Clin. 2017;67(1):7–30. Siegel RL, Miller KD, Jemal A. Cancer statics 2017. CA Cancer J Clin. 2017;67(1):7–30.
3.
go back to reference Akin O, Brennan S, Dershaw D, Ginsberg M, Gollub M, Schoder H, Panicek D, Hricak H. Advances in oncologic imaging: update on 5 common cancers. CA Cancer J Clin. 2012;62(6):364–93.CrossRef Akin O, Brennan S, Dershaw D, Ginsberg M, Gollub M, Schoder H, Panicek D, Hricak H. Advances in oncologic imaging: update on 5 common cancers. CA Cancer J Clin. 2012;62(6):364–93.CrossRef
4.
go back to reference Stavros A, Thickman D, Rapp C, Dennis M, Parker S, Sisney G. Solid breast nodules: use of sonography to distinguish between benign and malignant lesions. Radiology. 1995;196(1):123–34.CrossRef Stavros A, Thickman D, Rapp C, Dennis M, Parker S, Sisney G. Solid breast nodules: use of sonography to distinguish between benign and malignant lesions. Radiology. 1995;196(1):123–34.CrossRef
5.
go back to reference Daoud MI, Atallah AA, Awwad F, Al-Najar M. Accurate and fully automatic segmentation of breast ultrasound images by combining image boundary and region information. In: International Symposium on Biomedical Imaging; 2016. p. 718–21. Daoud MI, Atallah AA, Awwad F, Al-Najar M. Accurate and fully automatic segmentation of breast ultrasound images by combining image boundary and region information. In: International Symposium on Biomedical Imaging; 2016. p. 718–21.
6.
go back to reference Liu L, Qin W, Yang R, Yu C, Li L, Wen T, Gu J. Segmentation of breast ultrasound image using graph cuts and level set. In: Int. Conf. on Biom. Image and Signal Proces; 2015. p. 1–4. Liu L, Qin W, Yang R, Yu C, Li L, Wen T, Gu J. Segmentation of breast ultrasound image using graph cuts and level set. In: Int. Conf. on Biom. Image and Signal Proces; 2015. p. 1–4.
7.
go back to reference Jiang P, Peng J, Zhang G, Cheng E, Megalooikonomou V, Ling H. Learning-based automatic breast tumor detection and segmentation in ultrasound images. In: IEEE Int. Symp. on Biom. Imaging; 2012. p. 1587–90. Jiang P, Peng J, Zhang G, Cheng E, Megalooikonomou V, Ling H. Learning-based automatic breast tumor detection and segmentation in ultrasound images. In: IEEE Int. Symp. on Biom. Imaging; 2012. p. 1587–90.
8.
go back to reference Torbati N, Ayatollahi A, Kermani A. Ultrasound image segmentation by using a FIR neural network. In: Iranian Conf. on Electrical Engineering; 2013. p. 1–5. Torbati N, Ayatollahi A, Kermani A. Ultrasound image segmentation by using a FIR neural network. In: Iranian Conf. on Electrical Engineering; 2013. p. 1–5.
9.
go back to reference Zhao F, Li X, Biswas S, Mullick R, Mendonça PRS, Vaidya V. Topological texture-based method for mass detection in breast ultrasound image. In: Int. Symp. on Biom. Imaging; 2014. p. 685–9. Zhao F, Li X, Biswas S, Mullick R, Mendonça PRS, Vaidya V. Topological texture-based method for mass detection in breast ultrasound image. In: Int. Symp. on Biom. Imaging; 2014. p. 685–9.
10.
go back to reference Yap MH, Pons G, Martí J, Ganau S, Sentís M, Zwiggelaar R, Davison AK, Martí R. Automated breast ultrasound lesions detection using convolutional neural networks. IEEE J Biomed Health Inform. 2017;22(4):1218–26.CrossRef Yap MH, Pons G, Martí J, Ganau S, Sentís M, Zwiggelaar R, Davison AK, Martí R. Automated breast ultrasound lesions detection using convolutional neural networks. IEEE J Biomed Health Inform. 2017;22(4):1218–26.CrossRef
11.
go back to reference Dhungel N, Carneiro G, Bradley AP. Deep learning and structured prediction for the segmentation of mass in mammograms. In: Proc. Int. Conf. Med. Image Comput. Comput.-Assisted Intervention; 2015. p. 605–12. Dhungel N, Carneiro G, Bradley AP. Deep learning and structured prediction for the segmentation of mass in mammograms. In: Proc. Int. Conf. Med. Image Comput. Comput.-Assisted Intervention; 2015. p. 605–12.
12.
go back to reference Mordang JJ, Janssen T, Bria A, Kooi T, Gubern-Merida A, Karssemeijer N. Automatic microcalcification detection in multi-vendor mammography using convolutional neural networks. In: Proc. Int. Workshop Digital Mammography; 2016. p. 35–42. Mordang JJ, Janssen T, Bria A, Kooi T, Gubern-Merida A, Karssemeijer N. Automatic microcalcification detection in multi-vendor mammography using convolutional neural networks. In: Proc. Int. Workshop Digital Mammography; 2016. p. 35–42.
13.
go back to reference Ahn CK, Heo C, Jin H, Kim JH. A novel deep learning-based approach to high accuracy breast density estimation in digital mammography. In: Proc. SPIE, vol. 10134; 2017. p. 101 342O. Ahn CK, Heo C, Jin H, Kim JH. A novel deep learning-based approach to high accuracy breast density estimation in digital mammography. In: Proc. SPIE, vol. 10134; 2017. p. 101 342O.
14.
go back to reference Long J, Shelhamer E, Darrell T. Fully convolutional networks for semantic segmentation. In: Proc. IEEE Conf. Comput. Vis. Pattern Recognit; 2015. p. 3431–40. Long J, Shelhamer E, Darrell T. Fully convolutional networks for semantic segmentation. In: Proc. IEEE Conf. Comput. Vis. Pattern Recognit; 2015. p. 3431–40.
15.
go back to reference Ronneberger O, Fischer P, Brox T. U-net: convolutional networks for biomedical image segmentation. In: International conference on medical image computing and computer-assisted intervention; 2015. p. 234–41. Ronneberger O, Fischer P, Brox T. U-net: convolutional networks for biomedical image segmentation. In: International conference on medical image computing and computer-assisted intervention; 2015. p. 234–41.
16.
go back to reference Infantosi AFC, Pereira WCA, Luz LMS, Alvarenga AV. Breast ultrasound segmentation using morphologic operators and a Gaussian function constraint. In: 14th Nordic-Baltic conference on biomedical engineering and medical physics; 2008. p. 520–3.CrossRef Infantosi AFC, Pereira WCA, Luz LMS, Alvarenga AV. Breast ultrasound segmentation using morphologic operators and a Gaussian function constraint. In: 14th Nordic-Baltic conference on biomedical engineering and medical physics; 2008. p. 520–3.CrossRef
17.
go back to reference Gomez W, Leija L, Alvarenga AV, Infantosi AFC, Pereira WCA. Computerized lesion segmentation of breast ultrasound based on marker-controlled watershed transformation. Med Phys. 2010;37(1):82–95.CrossRef Gomez W, Leija L, Alvarenga AV, Infantosi AFC, Pereira WCA. Computerized lesion segmentation of breast ultrasound based on marker-controlled watershed transformation. Med Phys. 2010;37(1):82–95.CrossRef
18.
go back to reference Roth HR, Farag A, Lu L, Turkbey EB, Summers RM. Deep convolutional networks for pancreas segmentation in CT imaging. Ourselin, Sébastien and Styner, Martin A. Editors. Medical Imaging: Image Processing. SPIE; 2015. p. 94131G–94131G-8. http://dx.doi.org/10.1117/12.2081420. Roth HR, Farag A, Lu L, Turkbey EB, Summers RM. Deep convolutional networks for pancreas segmentation in CT imaging. Ourselin, Sébastien and Styner, Martin A. Editors. Medical Imaging: Image Processing. SPIE; 2015. p. 94131G–94131G-8. http://​dx.​doi.​org/​10.​1117/​12.​2081420.
19.
go back to reference Shelhamer E, Long J, Darrell T. Fully convolutional networks for semantic segmentation. IEEE Trans Pattern Anal Mach Intell. 2017;39(4):640–51.CrossRef Shelhamer E, Long J, Darrell T. Fully convolutional networks for semantic segmentation. IEEE Trans Pattern Anal Mach Intell. 2017;39(4):640–51.CrossRef
20.
go back to reference Krizhevsky A, Sutskever I, Hinton G. ImageNet classification with deep convolutional neural networks. Adv Neural Inf Process Syst. 2012;25:1106–14. Krizhevsky A, Sutskever I, Hinton G. ImageNet classification with deep convolutional neural networks. Adv Neural Inf Process Syst. 2012;25:1106–14.
21.
go back to reference Chen H, Qi XJ, Cheng JZ, Heng PA. Deep contextual networks for neuronal structure segmentation. In: Thirtieth AAAI conference on artificial intelligence; 2016. p. 1167–73. Chen H, Qi XJ, Cheng JZ, Heng PA. Deep contextual networks for neuronal structure segmentation. In: Thirtieth AAAI conference on artificial intelligence; 2016. p. 1167–73.
Metadata
Title
Evaluating the performance of convolutional neural networks with direct acyclic graph architectures in automatic segmentation of breast lesion in US images
Authors
Marly Guimarães Fernandes Costa
João Paulo Mendes Campos
Gustavo de Aquino e Aquino
Wagner Coelho de Albuquerque Pereira
Cícero Ferreira Fernandes Costa Filho
Publication date
01-12-2019
Publisher
BioMed Central
Published in
BMC Medical Imaging / Issue 1/2019
Electronic ISSN: 1471-2342
DOI
https://doi.org/10.1186/s12880-019-0389-2

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