Skip to main content
Top
Published in: Archives of Virology 5/2011

Open Access 01-05-2011 | Annotated Sequence Record

The genome sequence of pepper vein yellows virus (family Luteoviridae, genus Polerovirus)

Authors: Ritsuko Murakami, Nobuhiko Nakashima, Norihide Hinomoto, Shinji Kawano, Tetsuya Toyosato

Published in: Archives of Virology | Issue 5/2011

Login to get access

Abstract

The complete genome of pepper vein yellows virus (PeVYV) was sequenced using random amplification of RNA samples isolated from vector insects (Aphis gossypii) that had been given access to PeVYV-infected plants. The PeVYV genome consisted of 6244 nucleotides and had a genomic organization characteristic of members of the genus Polerovirus. PeVYV had highest amino acid sequence identities in ORF0 to ORF3 (75.9 - 91.9%) with tobacco vein distorting polerovirus, with which it was only 25.1% identical in ORF5. These sequence comparisons and previously studied biological properties indicate that PeVYV is a distinctly different virus and belongs to a new species of the genus Polerovirus.
Literature
1.
go back to reference Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104–2105PubMedCrossRef Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21:2104–2105PubMedCrossRef
2.
go back to reference D’Arcy CJ, Domier LL (2005) Family Luteoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy VIII. Elsevier, San Diego, pp 891–900 D’Arcy CJ, Domier LL (2005) Family Luteoviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy VIII. Elsevier, San Diego, pp 891–900
3.
go back to reference Dombrovsky A, Glanz E, Pearlsman M, Lachman O, Antignus Y (2010) Characterization of Pepper yellow leaf curl virus, a tentative new Polerovirus species causing a yellowing disease of pepper. Phytoparasitica 38:477–486CrossRef Dombrovsky A, Glanz E, Pearlsman M, Lachman O, Antignus Y (2010) Characterization of Pepper yellow leaf curl virus, a tentative new Polerovirus species causing a yellowing disease of pepper. Phytoparasitica 38:477–486CrossRef
4.
go back to reference Edger RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797CrossRef Edger RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797CrossRef
5.
go back to reference Gritsun TS, Gould EA (2007) Origin and evolution of 3’UTR of flaviviruses: long direct repeats as a basis for the formation of secondary structures and their significance for virus transmission. Adv Virus Res 69:203–248PubMedCrossRef Gritsun TS, Gould EA (2007) Origin and evolution of 3’UTR of flaviviruses: long direct repeats as a basis for the formation of secondary structures and their significance for virus transmission. Adv Virus Res 69:203–248PubMedCrossRef
6.
go back to reference Guilley H, Wipf-Scheibel C, Richards K, Lecoq H, Jonard G (1994) Nucleotide sequence of cucurbit aphid-borne yellows luteovirus. Virology 202:1012–1017PubMedCrossRef Guilley H, Wipf-Scheibel C, Richards K, Lecoq H, Jonard G (1994) Nucleotide sequence of cucurbit aphid-borne yellows luteovirus. Virology 202:1012–1017PubMedCrossRef
7.
go back to reference Guilley H, Richards KE, Jonard G (1995) Nucleotide sequence of beet mild yellowing virus RNA. Arch Virol 140:1109–1118PubMedCrossRef Guilley H, Richards KE, Jonard G (1995) Nucleotide sequence of beet mild yellowing virus RNA. Arch Virol 140:1109–1118PubMedCrossRef
8.
go back to reference Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704PubMedCrossRef Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704PubMedCrossRef
9.
go back to reference Kozlowska-Makulska A, Guilley H, Szyndel MS, Beuve M, Lemaire O, Herrbach E, Bouzoubaa S (2010) P0 proteins of European beet-infecting poleroviruses display variable RNA silencing suppression activity. J Gen Virol 91:1082–1091PubMedCrossRef Kozlowska-Makulska A, Guilley H, Szyndel MS, Beuve M, Lemaire O, Herrbach E, Bouzoubaa S (2010) P0 proteins of European beet-infecting poleroviruses display variable RNA silencing suppression activity. J Gen Virol 91:1082–1091PubMedCrossRef
10.
go back to reference Mo X, Chen Z, Chen J (2010) Complete nucleotide sequence and genome organization of a Chinese isolate of Tobacco vein distorting virus. Virus Genes 41:425–431PubMedCrossRef Mo X, Chen Z, Chen J (2010) Complete nucleotide sequence and genome organization of a Chinese isolate of Tobacco vein distorting virus. Virus Genes 41:425–431PubMedCrossRef
11.
go back to reference Ryabov EV (2007) A novel virus isolated from the aphid Brevicoryne brassicae with similarity to Hymenoptera picorna-like viruses. J Gen Virol 88:2590–2595PubMedCrossRef Ryabov EV (2007) A novel virus isolated from the aphid Brevicoryne brassicae with similarity to Hymenoptera picorna-like viruses. J Gen Virol 88:2590–2595PubMedCrossRef
12.
go back to reference Xiang H, Shang Q, Han C, Li D, Yu J (2008) Complete sequence analysis reveals two distinct poleroviruses infecting cucurbits in China. Arch Virol 153:1155–1160PubMedCrossRef Xiang H, Shang Q, Han C, Li D, Yu J (2008) Complete sequence analysis reveals two distinct poleroviruses infecting cucurbits in China. Arch Virol 153:1155–1160PubMedCrossRef
13.
go back to reference Yonaha T, Toyosato T, Kawano S, Osaki T (1995) Pepper vein yellows virus, a novel luteovirus from bell pepper plants in Japan. Ann Phytopathol Soc Jpn 61:178–184 Yonaha T, Toyosato T, Kawano S, Osaki T (1995) Pepper vein yellows virus, a novel luteovirus from bell pepper plants in Japan. Ann Phytopathol Soc Jpn 61:178–184
Metadata
Title
The genome sequence of pepper vein yellows virus (family Luteoviridae, genus Polerovirus)
Authors
Ritsuko Murakami
Nobuhiko Nakashima
Norihide Hinomoto
Shinji Kawano
Tetsuya Toyosato
Publication date
01-05-2011
Publisher
Springer Vienna
Published in
Archives of Virology / Issue 5/2011
Print ISSN: 0304-8608
Electronic ISSN: 1432-8798
DOI
https://doi.org/10.1007/s00705-011-0956-5

Other articles of this Issue 5/2011

Archives of Virology 5/2011 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine