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Published in: Forensic Science, Medicine and Pathology 2/2013

01-06-2013 | Technical Report

Successful direct amplification of nuclear markers from a single hair follicle

Authors: Renée Ottens, Duncan Taylor, Damien Abarno, Adrian Linacre

Published in: Forensic Science, Medicine and Pathology | Issue 2/2013

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Abstract

We report on successful amplification of DNA profiles from a single hair. Direct amplification was used on the root tip of both anagen and telogen hairs using a kit to amplify 15 STR loci. All 30 anagen hairs tested from five different people gave full DNA profiles after 29 cycles with no allelic drop-in or heterozygous imbalance. Six of the 30 telogen hairs tested resulted in a full DNA profile, and a further four telogen hair samples tested produced a DNA profile of five or more complete loci that could be up-loaded to the National DNA Database (Australia). A full DNA profile was also obtained from the shaft of an anagen hair. Current practice for many laboratories is that a single hair may not be subjected to DNA testing as there is little chance of success, hence this 100 % success rate from anagen hairs is a significant advancement. A full DNA profile was obtained from a 5 year-old single hair illustrating the success when using direct PCR rather than attempting an extraction prior to the amplification step. The process described deliberately uses current DNA profiling methods with no increase in cycle number, such that the methodology can be incorporated readily into operational practice. For the first time in the field of human identification, single hairs can be analyzed with confidence that a meaningful DNA profile will be generated and the data accepted by the criminal justice system.
Literature
1.
go back to reference Gausterer C, Stein C, Stimpfl T. Application of direct PCR in a forensic case of yew poisoning. Int J Legal Med. 2012;126(2):315–9.PubMedCrossRef Gausterer C, Stein C, Stimpfl T. Application of direct PCR in a forensic case of yew poisoning. Int J Legal Med. 2012;126(2):315–9.PubMedCrossRef
2.
go back to reference Vallone PM, Hill CR, Butler JM. Demonstration of rapid multiplex PCR amplification involving 16 genetic loci. Forensic Sci Int Genet. 2008;3(1):42–5.PubMedCrossRef Vallone PM, Hill CR, Butler JM. Demonstration of rapid multiplex PCR amplification involving 16 genetic loci. Forensic Sci Int Genet. 2008;3(1):42–5.PubMedCrossRef
3.
go back to reference Verheij S, Harteveld J, Sijen T. A protocol for direct and rapid multiplex PCR amplification on forensically relevant samples. Forensic Sci Int Genet. 2012;6(2):167–75.PubMedCrossRef Verheij S, Harteveld J, Sijen T. A protocol for direct and rapid multiplex PCR amplification on forensically relevant samples. Forensic Sci Int Genet. 2012;6(2):167–75.PubMedCrossRef
4.
go back to reference Wang DY, Chang C-W, Lagace RE, Oldroyd NJ, Hennessy LK. Development and validation of the AmpFlSTR (R) identifiler (R) direct PCR amplification kit: a multiplex assay for the direct amplification of single-source samples. J Forensic Sci. 2011;56(4):835–45.PubMedCrossRef Wang DY, Chang C-W, Lagace RE, Oldroyd NJ, Hennessy LK. Development and validation of the AmpFlSTR (R) identifiler (R) direct PCR amplification kit: a multiplex assay for the direct amplification of single-source samples. J Forensic Sci. 2011;56(4):835–45.PubMedCrossRef
5.
go back to reference Linacre A, Pekarek V, Swaran YC, Tobe SS. Generation of DNA profiles from fabrics without DNA extraction. Forensic Sci Int Genet. 2010;4(2):137–41.PubMedCrossRef Linacre A, Pekarek V, Swaran YC, Tobe SS. Generation of DNA profiles from fabrics without DNA extraction. Forensic Sci Int Genet. 2010;4(2):137–41.PubMedCrossRef
6.
go back to reference Lee HY, Park MJ, Kim NY, Yang WI, Shin K-J. Rapid direct PCR for ABO blood typing. J Forensic Sci. 2011;56:S179–82.PubMedCrossRef Lee HY, Park MJ, Kim NY, Yang WI, Shin K-J. Rapid direct PCR for ABO blood typing. J Forensic Sci. 2011;56:S179–82.PubMedCrossRef
7.
go back to reference Vallone PM, Hill CR, Podini D, Butler JM. Rapid amplification of commercial STR typing kits. Forensic Sci Int Genet Suppl Ser. 2009;2(1):111–2.CrossRef Vallone PM, Hill CR, Podini D, Butler JM. Rapid amplification of commercial STR typing kits. Forensic Sci Int Genet Suppl Ser. 2009;2(1):111–2.CrossRef
8.
go back to reference Swaran YC, Welch L. A comparison between direct PCR and extraction to generate DNA profiles from samples retrieved from various substrates. Forensic Sci Int Genet. 2012;6(3):407–12.PubMedCrossRef Swaran YC, Welch L. A comparison between direct PCR and extraction to generate DNA profiles from samples retrieved from various substrates. Forensic Sci Int Genet. 2012;6(3):407–12.PubMedCrossRef
9.
go back to reference McNevin D, Wilson-Wilde L, Robertson J, Kyd J, Lennard C. Short tandem repeat (STR) genotyping of keratinised hair—part 1. Review of current status and knowledge gaps. Forensic Sci Int. 2005;153(2–3):237–46.PubMedCrossRef McNevin D, Wilson-Wilde L, Robertson J, Kyd J, Lennard C. Short tandem repeat (STR) genotyping of keratinised hair—part 1. Review of current status and knowledge gaps. Forensic Sci Int. 2005;153(2–3):237–46.PubMedCrossRef
10.
go back to reference Bekaert B, Larmuseau MHD, Vanhove MPM, Opdekamp A, Decorte R. Automated DNA extraction of single dog hairs without roots for mitochondrial DNA analysis. Forensic Sci Int Genet. 2012;6(2):277–81.PubMedCrossRef Bekaert B, Larmuseau MHD, Vanhove MPM, Opdekamp A, Decorte R. Automated DNA extraction of single dog hairs without roots for mitochondrial DNA analysis. Forensic Sci Int Genet. 2012;6(2):277–81.PubMedCrossRef
11.
go back to reference Koehnemann S, Pfeiffer H. Application of mtDNA SNP analysis in forensic casework. Forensic Sci Int Genet. 2011;5(3):216–21.CrossRef Koehnemann S, Pfeiffer H. Application of mtDNA SNP analysis in forensic casework. Forensic Sci Int Genet. 2011;5(3):216–21.CrossRef
12.
go back to reference Mosquera-Miguel A, Alvarez-Iglesias V, Cerezo M, Lareu MV, Carracedo A, Salas A. Testing the performance of mtSNP minisequencing in forensic samples. Forensic Sci Int Genet. 2009;3(4):261–4.PubMedCrossRef Mosquera-Miguel A, Alvarez-Iglesias V, Cerezo M, Lareu MV, Carracedo A, Salas A. Testing the performance of mtSNP minisequencing in forensic samples. Forensic Sci Int Genet. 2009;3(4):261–4.PubMedCrossRef
13.
go back to reference Almeida M, Betancor E, Fregel R, Suárez NM, Pestano J. Efficient DNA extraction from hair shafts. Forensic Sci Int GenetSuppl Ser. 2011;3(1):e319–20.CrossRef Almeida M, Betancor E, Fregel R, Suárez NM, Pestano J. Efficient DNA extraction from hair shafts. Forensic Sci Int GenetSuppl Ser. 2011;3(1):e319–20.CrossRef
14.
go back to reference Barbaro A, Cormaci P, Binns C, Grant P. Hair typing in a cold case. Forensic Sci Int Genet Suppl Ser. 2008;1(1):396–7.CrossRef Barbaro A, Cormaci P, Binns C, Grant P. Hair typing in a cold case. Forensic Sci Int Genet Suppl Ser. 2008;1(1):396–7.CrossRef
15.
go back to reference Edson J, Brooks EM, McLaren C, Robertson J, McNevin D, Cooper A, et al. A quantitative assessment of a reliable screening technique for the STR analysis of telogen hair roots. Forensic Sci Int Genet. 2013;7(1):180–8.PubMedCrossRef Edson J, Brooks EM, McLaren C, Robertson J, McNevin D, Cooper A, et al. A quantitative assessment of a reliable screening technique for the STR analysis of telogen hair roots. Forensic Sci Int Genet. 2013;7(1):180–8.PubMedCrossRef
16.
go back to reference Quinones I, Daniel B. Cell free DNA as a component of forensic evidence recovered from touched surfaces. Forensic Sci Int Genet. 2012;6(1):26–30.PubMedCrossRef Quinones I, Daniel B. Cell free DNA as a component of forensic evidence recovered from touched surfaces. Forensic Sci Int Genet. 2012;6(1):26–30.PubMedCrossRef
Metadata
Title
Successful direct amplification of nuclear markers from a single hair follicle
Authors
Renée Ottens
Duncan Taylor
Damien Abarno
Adrian Linacre
Publication date
01-06-2013
Publisher
Springer US
Published in
Forensic Science, Medicine and Pathology / Issue 2/2013
Print ISSN: 1547-769X
Electronic ISSN: 1556-2891
DOI
https://doi.org/10.1007/s12024-012-9402-6

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