Skip to main content
Top
Published in: Forensic Science, Medicine and Pathology 2/2015

01-06-2015 | Original Article

Seasonal variation of postmortem microbial communities

Authors: David O. Carter, Jessica L. Metcalf, Alexander Bibat, Rob Knight

Published in: Forensic Science, Medicine and Pathology | Issue 2/2015

Login to get access

Abstract

Body-associated microbes were recently shown to change significantly during decomposition, undergoing an ecological succession in experimental conditions using rodent and swine models. We investigated microbial succession in soils associated with swine carcasses under experimental field conditions in summer and winter. We demonstrate that these postmortem microbial communities change in a specific, reproducible fashion, and that soil microbes represent a significant component of the postmortem microbial community, contrary to widespread belief in forensic science. However, the effects of decomposition on soil microbial communities were different in summer and winter. We suggest that the microbial ecological succession will be useful in medicolegal death investigation; however, observations in winter might not be applicable to summer, which indicates a need for a greater understanding of the seasonality of decomposition.
Literature
1.
go back to reference Metcalf J, Wegener-Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, et al. A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. eLife. 2013;2:e01104.CrossRefPubMedCentralPubMed Metcalf J, Wegener-Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, et al. A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system. eLife. 2013;2:e01104.CrossRefPubMedCentralPubMed
2.
go back to reference Pechal JL, Crippen TL, Benbow ME, Tarone AM, Dowd S, Tomberlin JK. The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing. Int J Leg Med. 2014;128:193–205.CrossRef Pechal JL, Crippen TL, Benbow ME, Tarone AM, Dowd S, Tomberlin JK. The potential use of bacterial community succession in forensics as described by high throughput metagenomic sequencing. Int J Leg Med. 2014;128:193–205.CrossRef
3.
go back to reference Hyde ER, Haarmann DP, Lynne AM, Bucheli SR, Pertrosino JF. The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition. PLoS One. 2013;8:e77733.CrossRefPubMedCentralPubMed Hyde ER, Haarmann DP, Lynne AM, Bucheli SR, Pertrosino JF. The living dead: bacterial community structure of a cadaver at the onset and end of the bloat stage of decomposition. PLoS One. 2013;8:e77733.CrossRefPubMedCentralPubMed
4.
go back to reference Pechal JL, Crippen TL, Tarone AM, Lewis AJ, Tomberlin JK, Benbow ME. Microbial community functional change during vertebrate carrion decomposition. PLoS One. 2013;8:e79035.CrossRefPubMedCentralPubMed Pechal JL, Crippen TL, Tarone AM, Lewis AJ, Tomberlin JK, Benbow ME. Microbial community functional change during vertebrate carrion decomposition. PLoS One. 2013;8:e79035.CrossRefPubMedCentralPubMed
5.
6.
go back to reference Carter DO, Yellowlees D, Tibbett M. Cadaver decomposition in terrestrial ecosystems. Naturwissenschaften. 2007;94:12–24.CrossRefPubMed Carter DO, Yellowlees D, Tibbett M. Cadaver decomposition in terrestrial ecosystems. Naturwissenschaften. 2007;94:12–24.CrossRefPubMed
7.
go back to reference Carter DO, Yellowlees D, Tibbett M. Temperature affects microbial decomposition of cadavers (Rattus rattus) in contrasting soils. Appl Soil Ecol. 2008;40:129–37.CrossRef Carter DO, Yellowlees D, Tibbett M. Temperature affects microbial decomposition of cadavers (Rattus rattus) in contrasting soils. Appl Soil Ecol. 2008;40:129–37.CrossRef
8.
go back to reference Carter DO, Yellowlees D, Tibbett M. Moisture can be the dominant environmental parameter governing cadaver decomposition in soil. Forensic Sci Int. 2010;200:60–6.CrossRefPubMed Carter DO, Yellowlees D, Tibbett M. Moisture can be the dominant environmental parameter governing cadaver decomposition in soil. Forensic Sci Int. 2010;200:60–6.CrossRefPubMed
9.
go back to reference Meyer J, Anderson B, Carter DO. Seasonal variation of carcass decomposition and gravesoil chemistry in a cold (Dfa) climate. J Forensic Sci. 2013;58:1175–82.CrossRefPubMed Meyer J, Anderson B, Carter DO. Seasonal variation of carcass decomposition and gravesoil chemistry in a cold (Dfa) climate. J Forensic Sci. 2013;58:1175–82.CrossRefPubMed
10.
go back to reference Benbow ME, Lewis AJ, Tomberlin JK, Pechal JL. Seasonal necrophagous insect community assembly during vertebrate carrion decomposition. J Med Entomol. 2013;50:440–50.CrossRefPubMed Benbow ME, Lewis AJ, Tomberlin JK, Pechal JL. Seasonal necrophagous insect community assembly during vertebrate carrion decomposition. J Med Entomol. 2013;50:440–50.CrossRefPubMed
11.
go back to reference Peel MC, Finlayson BL, McMahon TA. Updated world map of the Köppen–Geiger climate classification. Hydrol Earth Syst Sci. 2007;11:1633–44.CrossRef Peel MC, Finlayson BL, McMahon TA. Updated world map of the Köppen–Geiger climate classification. Hydrol Earth Syst Sci. 2007;11:1633–44.CrossRef
12.
go back to reference Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335–6.CrossRefPubMedCentralPubMed Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335–6.CrossRefPubMedCentralPubMed
13.
go back to reference Putman RJ. Patterns of carbon dioxide evolution from decaying carrion. 1. Decomposition of small mammal carrion in temperate systems. Oikos. 1978;31:47–57.CrossRef Putman RJ. Patterns of carbon dioxide evolution from decaying carrion. 1. Decomposition of small mammal carrion in temperate systems. Oikos. 1978;31:47–57.CrossRef
14.
go back to reference Putman RJ. Flow of energy and organic matter from a carcase during decomposition. 2. Decomposition of small mammal carrion in temperate systems. Oikos. 1978;31:58–68.CrossRef Putman RJ. Flow of energy and organic matter from a carcase during decomposition. 2. Decomposition of small mammal carrion in temperate systems. Oikos. 1978;31:58–68.CrossRef
15.
go back to reference Lauber CL, Metcalf JL, Keepers K, Ackermann G, Carter DO, Knight R. Vertebrate decomposition is accelerated by soil microbes. Appl Environ Microbiol. 2014;80:4920–9.CrossRefPubMedCentralPubMed Lauber CL, Metcalf JL, Keepers K, Ackermann G, Carter DO, Knight R. Vertebrate decomposition is accelerated by soil microbes. Appl Environ Microbiol. 2014;80:4920–9.CrossRefPubMedCentralPubMed
16.
go back to reference Evans WED. The chemistry of death. Springfield: Charles C. Thomas; 1963. Evans WED. The chemistry of death. Springfield: Charles C. Thomas; 1963.
17.
go back to reference Fierer N, Ladau J, Clemente JC, Leff JW, Owens SM, Pollard KS, et al. Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States. Science. 2013;6158:621–4.CrossRef Fierer N, Ladau J, Clemente JC, Leff JW, Owens SM, Pollard KS, et al. Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States. Science. 2013;6158:621–4.CrossRef
18.
go back to reference Bongers T, Ferris H. Nematode community structure as a bioindicator in environmental sampling. Trends Ecol Evol. 1999;14:224–8.CrossRefPubMed Bongers T, Ferris H. Nematode community structure as a bioindicator in environmental sampling. Trends Ecol Evol. 1999;14:224–8.CrossRefPubMed
19.
go back to reference Tibbett M, Carter DO. Mushrooms and taphonomy: the fungi that mark woodland graves. Mycologist. 2003;17:20–4.CrossRef Tibbett M, Carter DO. Mushrooms and taphonomy: the fungi that mark woodland graves. Mycologist. 2003;17:20–4.CrossRef
20.
go back to reference Sagara N, Yamanaka T, Tibbett M. Soil fungi associated with graves and latrines: toward a forensic mycology. In: Tibbett M, Carter DO, editors. Soil analysis in forensic taphonomy: chemical and biological effects of buried human remains. Boca Raton: CRC Press; 2008. p. 67–108.CrossRef Sagara N, Yamanaka T, Tibbett M. Soil fungi associated with graves and latrines: toward a forensic mycology. In: Tibbett M, Carter DO, editors. Soil analysis in forensic taphonomy: chemical and biological effects of buried human remains. Boca Raton: CRC Press; 2008. p. 67–108.CrossRef
Metadata
Title
Seasonal variation of postmortem microbial communities
Authors
David O. Carter
Jessica L. Metcalf
Alexander Bibat
Rob Knight
Publication date
01-06-2015
Publisher
Springer US
Published in
Forensic Science, Medicine and Pathology / Issue 2/2015
Print ISSN: 1547-769X
Electronic ISSN: 1556-2891
DOI
https://doi.org/10.1007/s12024-015-9667-7

Other articles of this Issue 2/2015

Forensic Science, Medicine and Pathology 2/2015 Go to the issue