Skip to main content
Top
Published in: BMC Medical Genetics 1/2006

Open Access 01-12-2006 | Research article

Satisfaction survey with DNA cards method to collect genetic samples for pharmacogenetics studies

Authors: Jose M Vidal-Taboada, Mercedes Cucala, Sergio Mas Herrero, Amalia Lafuente, Albert Cobos

Published in: BMC Medical Genetics | Issue 1/2006

Login to get access

Abstract

Background

Pharmacogenetic studies are essential in understanding the interindividual variability of drug responses. DNA sample collection for genotyping is a critical step in genetic studies. A method using dried blood samples from finger-puncture, collected on DNA-cards, has been described as an alternative to the usual venepuncture technique. The purpose of this study is to evaluate the implementation of the DNA cards method in a multicentre clinical trial, and to assess the degree of investigators' satisfaction and the acceptance of the patients perceived by the investigators.

Methods

Blood samples were collected on DNA-cards. The quality and quantity of DNA recovered were analyzed. Investigators were questioned regarding their general interest, previous experience, safety issues, preferences and perceived patient satisfaction.

Results

151 patients' blood samples were collected. Genotyping of GST polymorphisms was achieved in all samples (100%). 28 investigators completed the survey. Investigators perceived patient satisfaction as very good (60.7%) or good (39.3%), without reluctance to finger puncture. Investigators preferred this method, which was considered safer and better than the usual methods. All investigators would recommend using it in future genetic studies.

Conclusion

Within the clinical trial setting, the DNA-cards method was very well accepted by investigators and patients (in perception of investigators), and was preferred to conventional methods due to its ease of use and safety.
Appendix
Available only for authorised users
Literature
1.
go back to reference Roses AD: Pharmacogenetics and the practice of medicine. Nature. 2000, 405: 857-65. 10.1038/35015728.CrossRefPubMed Roses AD: Pharmacogenetics and the practice of medicine. Nature. 2000, 405: 857-65. 10.1038/35015728.CrossRefPubMed
2.
go back to reference Weinshilboum R, Wang L: Pharmacogenomics: bench to bedside. Nat Rev Drug Discov. 2004, 3: 739-748. 10.1038/nrd1497.CrossRefPubMed Weinshilboum R, Wang L: Pharmacogenomics: bench to bedside. Nat Rev Drug Discov. 2004, 3: 739-748. 10.1038/nrd1497.CrossRefPubMed
3.
go back to reference Roses AD: Pharmacogenetics and drug development: the path to safer and more effective drugs. Nat Rev Genet. 2004, 5: 645-656. 10.1038/nrg1432.CrossRefPubMed Roses AD: Pharmacogenetics and drug development: the path to safer and more effective drugs. Nat Rev Genet. 2004, 5: 645-656. 10.1038/nrg1432.CrossRefPubMed
4.
go back to reference Struewing JP, Hartge P, Wacholder S, Baker SM, Berlin M, McAdams M, Timmerman MM, Brody LC, Tucker MA: The risk of cancer associated with specific mutations of BRCA1 and BRCA2 among Ashkenazi Jews. N Engl J Med. 1997, 336: 1401-1408. 10.1056/NEJM199705153362001.CrossRefPubMed Struewing JP, Hartge P, Wacholder S, Baker SM, Berlin M, McAdams M, Timmerman MM, Brody LC, Tucker MA: The risk of cancer associated with specific mutations of BRCA1 and BRCA2 among Ashkenazi Jews. N Engl J Med. 1997, 336: 1401-1408. 10.1056/NEJM199705153362001.CrossRefPubMed
5.
go back to reference Henning L, Felger I, Beck HP: Rapid DNA extraction for molecular epidemiological studies of malaria. Acta Trop. 1999, 72: 149-155. 10.1016/S0001-706X(98)00090-4.CrossRefPubMed Henning L, Felger I, Beck HP: Rapid DNA extraction for molecular epidemiological studies of malaria. Acta Trop. 1999, 72: 149-155. 10.1016/S0001-706X(98)00090-4.CrossRefPubMed
6.
go back to reference Myers RL, Burghoff RL, English DW, Wenzel AZ, Harvey AH: Evaluation of Isocode and other novel collection matrices as nucleic acid storage and processing devices for clinical samples [abstract #774]. 49th AAAC Annual Meeting, July 20–24th. 1997, Atlanta Myers RL, Burghoff RL, English DW, Wenzel AZ, Harvey AH: Evaluation of Isocode and other novel collection matrices as nucleic acid storage and processing devices for clinical samples [abstract #774]. 49th AAAC Annual Meeting, July 20–24th. 1997, Atlanta
7.
go back to reference Harty LC, Garcia-Closas M, Rothman N, Reid YA, Tucker MA, Hartge P: Collection of buccal cell DNA using treated cards. Cancer Epidemiol Biomarkers Prev. 2000, 9: 501-506.PubMed Harty LC, Garcia-Closas M, Rothman N, Reid YA, Tucker MA, Hartge P: Collection of buccal cell DNA using treated cards. Cancer Epidemiol Biomarkers Prev. 2000, 9: 501-506.PubMed
8.
go back to reference Kline MC, Duewer DL, Redman JW, Butler JM, Boyer DA: Polymerase chain reaction amplification of DNA from aged blood stains: quantitative evaluation of the "suitability for purpose" of four filter papers as archival media. Anal Chem. 2002, 74: 1863-1869. 10.1021/ac015715e.CrossRefPubMed Kline MC, Duewer DL, Redman JW, Butler JM, Boyer DA: Polymerase chain reaction amplification of DNA from aged blood stains: quantitative evaluation of the "suitability for purpose" of four filter papers as archival media. Anal Chem. 2002, 74: 1863-1869. 10.1021/ac015715e.CrossRefPubMed
9.
go back to reference Steinberg K, Beck J, Nickerson D, Garcia-Closas M, Gallagher M, Caggana M, Reid Y, Cosentino M, Ji J, Johnson D, Hayes RB, Earley M, Lorey F, Hannon H, Khoury MJ, Sampson E: DNA banking for epidemiologic studies a review of current practices. Epidemiology. 2002, 13 (3): 246-54. 10.1097/00001648-200205000-00003.CrossRefPubMed Steinberg K, Beck J, Nickerson D, Garcia-Closas M, Gallagher M, Caggana M, Reid Y, Cosentino M, Ji J, Johnson D, Hayes RB, Earley M, Lorey F, Hannon H, Khoury MJ, Sampson E: DNA banking for epidemiologic studies a review of current practices. Epidemiology. 2002, 13 (3): 246-54. 10.1097/00001648-200205000-00003.CrossRefPubMed
10.
go back to reference Zhong KJ, Salas CJ, Shafer R, Gubanov A, Gasser RA, Magill AJ, Forney JR, Kain KC: Comparison of IsoCode STIX and FTA Gene Guard collection matrices as whole-blood storage and processing devices for diagnosis of malaria by PCR. J Clin Microbiol. 2001, 39: 1195-1196. 10.1128/JCM.39.3.1195-1196.2001.CrossRefPubMedPubMedCentral Zhong KJ, Salas CJ, Shafer R, Gubanov A, Gasser RA, Magill AJ, Forney JR, Kain KC: Comparison of IsoCode STIX and FTA Gene Guard collection matrices as whole-blood storage and processing devices for diagnosis of malaria by PCR. J Clin Microbiol. 2001, 39: 1195-1196. 10.1128/JCM.39.3.1195-1196.2001.CrossRefPubMedPubMedCentral
11.
go back to reference Rogers C, Burgoyne L: Bacterial typing: storing and processing of stabilized reference bacteria for polymerase chain reaction without preparing DNA–an example of an automatable procedure. Anal Biochem. 1997, 247: 223-227. 10.1006/abio.1997.2031.CrossRefPubMed Rogers C, Burgoyne L: Bacterial typing: storing and processing of stabilized reference bacteria for polymerase chain reaction without preparing DNA–an example of an automatable procedure. Anal Biochem. 1997, 247: 223-227. 10.1006/abio.1997.2031.CrossRefPubMed
12.
go back to reference Panteleeff DD, John G, Nduati R, Mbori-Ngacha D, Richardson B, Kreiss J, Overbaugh J: Rapid method for screening dried blood samples on filter paper for human immunodeficiency virus type 1 DNA. J Clin Microbiol. 1999, 37: 350-353.PubMedPubMedCentral Panteleeff DD, John G, Nduati R, Mbori-Ngacha D, Richardson B, Kreiss J, Overbaugh J: Rapid method for screening dried blood samples on filter paper for human immunodeficiency virus type 1 DNA. J Clin Microbiol. 1999, 37: 350-353.PubMedPubMedCentral
13.
go back to reference Devost NC, Choy FY: Mutation analysis of Gaucher disease using dot-blood samples on FTA filter paper. Am J Med Genet. 2000, 94: 417-420. 10.1002/1096-8628(20001023)94:5<417::AID-AJMG14>3.0.CO;2-W.CrossRefPubMed Devost NC, Choy FY: Mutation analysis of Gaucher disease using dot-blood samples on FTA filter paper. Am J Med Genet. 2000, 94: 417-420. 10.1002/1096-8628(20001023)94:5<417::AID-AJMG14>3.0.CO;2-W.CrossRefPubMed
14.
go back to reference Dobbs LJ, Madigan MN, Carter AB, Earls L: Use of FTA gene guard filter paper for the storage and transportation of tumor cells for molecular testing. Arch Pathol Lab Med. 2002, 126: 56-63.PubMed Dobbs LJ, Madigan MN, Carter AB, Earls L: Use of FTA gene guard filter paper for the storage and transportation of tumor cells for molecular testing. Arch Pathol Lab Med. 2002, 126: 56-63.PubMed
15.
go back to reference Minguez M, Cucala M, on behalf of the ITEMS study group: Irritable bowel syndrome patients' quality of life in Spain: baseline characteristics of an open prospective trial (ITEMS). Gut. 2002, 51 (Suppl III): A249- Minguez M, Cucala M, on behalf of the ITEMS study group: Irritable bowel syndrome patients' quality of life in Spain: baseline characteristics of an open prospective trial (ITEMS). Gut. 2002, 51 (Suppl III): A249-
16.
go back to reference Duell EJ, Holly EA, Bracci PM, Liu M, Wiencke JK, Kelsey KT: A population-based, case-control study of polymorphisms in carcinogen-metabolizing genes, smoking, and pancreatic adenocarcinoma risk. J Natl Cancer Inst. 2002, 94: 297-306.CrossRefPubMed Duell EJ, Holly EA, Bracci PM, Liu M, Wiencke JK, Kelsey KT: A population-based, case-control study of polymorphisms in carcinogen-metabolizing genes, smoking, and pancreatic adenocarcinoma risk. J Natl Cancer Inst. 2002, 94: 297-306.CrossRefPubMed
17.
go back to reference Rebbeck TR: Molecular epidemiology of the human glutathione S-transferase genotypes GSTM1 and GSTT1 in cancer susceptibility. Cancer Epidemiol Biomarkers Prev. 1997, 6: 733-743.PubMed Rebbeck TR: Molecular epidemiology of the human glutathione S-transferase genotypes GSTM1 and GSTT1 in cancer susceptibility. Cancer Epidemiol Biomarkers Prev. 1997, 6: 733-743.PubMed
19.
go back to reference Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ: The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 2006, 34 (Database): D590-8. 10.1093/nar/gkj144.CrossRefPubMed Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ: The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 2006, 34 (Database): D590-8. 10.1093/nar/gkj144.CrossRefPubMed
20.
go back to reference Smith LM, Burgoyne LA: Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper. BMC Ecol. 2004, 4: 4-10.1186/1472-6785-4-4.CrossRefPubMedPubMedCentral Smith LM, Burgoyne LA: Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper. BMC Ecol. 2004, 4: 4-10.1186/1472-6785-4-4.CrossRefPubMedPubMedCentral
21.
go back to reference Burgoyne L, Kijas J, Hallsworth P, Turner J, Safe collection, storage and analysis of DNA from blood: Proceedings of the 5th Int Symposium on Human Identification. 1994, , October 8–11, Scottsdale, Arizona Burgoyne L, Kijas J, Hallsworth P, Turner J, Safe collection, storage and analysis of DNA from blood: Proceedings of the 5th Int Symposium on Human Identification. 1994, , October 8–11, Scottsdale, Arizona
22.
go back to reference Mulot C, Stucker I, Clavel J, Beaune P, Loriot MA: Collection of human genomic DNA from buccal cells for genetics studies: comparison between cytobrush, mouthwash, and treated card. J Biomed Biotechnol. 2005, 291-296. 10.1155/JBB.2005.291. 3 Mulot C, Stucker I, Clavel J, Beaune P, Loriot MA: Collection of human genomic DNA from buccal cells for genetics studies: comparison between cytobrush, mouthwash, and treated card. J Biomed Biotechnol. 2005, 291-296. 10.1155/JBB.2005.291. 3
23.
go back to reference Laso N, Lafuente MJ, Mas S, Trias M, Ascaso C, Molina R, Ballesta A, Rodriguez F, Lafuente A: Glutathione S-transferase (GSTM1 and GSTT1)-dependent risk for colorectal cancer. Anticancer Res. 2002, 22: 3399-3403.PubMed Laso N, Lafuente MJ, Mas S, Trias M, Ascaso C, Molina R, Ballesta A, Rodriguez F, Lafuente A: Glutathione S-transferase (GSTM1 and GSTT1)-dependent risk for colorectal cancer. Anticancer Res. 2002, 22: 3399-3403.PubMed
24.
go back to reference Mas S, Crescenti A, Vidal-Taboada JM, Bergonon S, Cuevillas F, Laso N, Molina R, Ballesta A, Lafuente A: Simultaneous genotyping of CYP2C9*2, *3, and 5' flanking region (C-1189T) polymorphisms in a Spanish population through a new minisequencing multiplex single-base extension analysis. Eur J Clin Pharmacol. 2005, 61: 635-641. 10.1007/s00228-005-0977-7.CrossRefPubMed Mas S, Crescenti A, Vidal-Taboada JM, Bergonon S, Cuevillas F, Laso N, Molina R, Ballesta A, Lafuente A: Simultaneous genotyping of CYP2C9*2, *3, and 5' flanking region (C-1189T) polymorphisms in a Spanish population through a new minisequencing multiplex single-base extension analysis. Eur J Clin Pharmacol. 2005, 61: 635-641. 10.1007/s00228-005-0977-7.CrossRefPubMed
25.
go back to reference Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K: Current Protocols in Molecular Biology. 1997, New York: John Wiley & Sons Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K: Current Protocols in Molecular Biology. 1997, New York: John Wiley & Sons
26.
go back to reference Dean FB, Hosono S, Fang L, Wu X, Faruqi AF, Bray-Ward P, Sun Z, Zong Q, Du Y, Du J, Driscoll M, Song W, Kingsmore SF, Egholm M, Lasken RS: Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA. 2002, 99: 5261-5266. 10.1073/pnas.082089499.CrossRefPubMedPubMedCentral Dean FB, Hosono S, Fang L, Wu X, Faruqi AF, Bray-Ward P, Sun Z, Zong Q, Du Y, Du J, Driscoll M, Song W, Kingsmore SF, Egholm M, Lasken RS: Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci USA. 2002, 99: 5261-5266. 10.1073/pnas.082089499.CrossRefPubMedPubMedCentral
27.
go back to reference Robertson KD: DNA methylation and human disease. Nat Rev Genet. 2005, 6 (8): 597-610. 10.1038/nrm1228.CrossRefPubMed Robertson KD: DNA methylation and human disease. Nat Rev Genet. 2005, 6 (8): 597-610. 10.1038/nrm1228.CrossRefPubMed
28.
go back to reference Rocha MN, Melo MR, Longui CA, Alves de Oliveira DV, Figueiredo CC, Pacchi PR: A three-step molecular protocol employing DNA obtained from dried blood spots for neonatal screening for 45, X Turner syndrome. Genet Mol Res. 2005, 4 (4): 749-754.PubMed Rocha MN, Melo MR, Longui CA, Alves de Oliveira DV, Figueiredo CC, Pacchi PR: A three-step molecular protocol employing DNA obtained from dried blood spots for neonatal screening for 45, X Turner syndrome. Genet Mol Res. 2005, 4 (4): 749-754.PubMed
Metadata
Title
Satisfaction survey with DNA cards method to collect genetic samples for pharmacogenetics studies
Authors
Jose M Vidal-Taboada
Mercedes Cucala
Sergio Mas Herrero
Amalia Lafuente
Albert Cobos
Publication date
01-12-2006
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2006
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/1471-2350-7-45

Other articles of this Issue 1/2006

BMC Medical Genetics 1/2006 Go to the issue