Skip to main content
Top
Published in: Annals of Surgical Oncology 12/2013

01-11-2013 | Hepatobiliary Tumors

Prognostic Gene Signatures for Hepatocellular Carcinoma: What Are We Measuring?

Authors: Kenneth K. Tanabe, MD, Yujin Hoshida, MD, PhD

Published in: Annals of Surgical Oncology | Issue 12/2013

Login to get access

Excerpt

In this issue of Annals of Surgical Oncology, Lim et al. 1 report on prognostic gene expression signatures from tumor and nontumor liver tissues from hepatocellular carcinoma (HCC) patients who underwent surgical resection at a single institution in Korea. The signatures were developed from a set of patients with relatively early stage diseases, and then evaluated in an independent validation cohort of patients with more advanced stage diseases. The authors report that their gene signature derived from the tumor tissues and not their gene signature from the nontumor tissue accurately predicted disease-free survival in the validation cohort. Their findings are consistent with previously published data suggesting that tumor-derived molecular information is more prognostic in advanced stage HCC, whereas nontumor liver-derived molecular information is more prognostic in earlier stage HCC.24
Literature
1.
go back to reference Lim HY, Sohn I, Deng S, Lee J, Jung SH, Mao M, et al. Prediction of disease-free survival in hepatocellular carcinoma by gene expression profiling. Ann Surg Oncol. 2013. doi:10.1245/s10434-013-3070-y. Lim HY, Sohn I, Deng S, Lee J, Jung SH, Mao M, et al. Prediction of disease-free survival in hepatocellular carcinoma by gene expression profiling. Ann Surg Oncol. 2013. doi:10.​1245/​s10434-013-3070-y.
2.
go back to reference Hoshida Y, Toffanin S, Lachenmayer A, Villanueva A, Minguez B, Llovet JM. Molecular classification and novel targets in hepatocellular carcinoma: recent advancements. Semin Liver Dis. 2010;30:35–51.PubMedCrossRef Hoshida Y, Toffanin S, Lachenmayer A, Villanueva A, Minguez B, Llovet JM. Molecular classification and novel targets in hepatocellular carcinoma: recent advancements. Semin Liver Dis. 2010;30:35–51.PubMedCrossRef
3.
go back to reference Hoshida Y, Villanueva A, Llovet JM. Molecular profiling to predict hepatocellular carcinoma outcome. Expert Rev Gastroenterol Hepatol. 2009;3:101–3.PubMedCrossRef Hoshida Y, Villanueva A, Llovet JM. Molecular profiling to predict hepatocellular carcinoma outcome. Expert Rev Gastroenterol Hepatol. 2009;3:101–3.PubMedCrossRef
4.
go back to reference Villanueva A, Hoshida Y, Toffanin S, Lachenmayer A, Alsinet C, Savic R, et al. New strategies in hepatocellular carcinoma: genomic prognostic markers. Clin Cancer Res. 2010;16:4688–94.PubMedCrossRef Villanueva A, Hoshida Y, Toffanin S, Lachenmayer A, Alsinet C, Savic R, et al. New strategies in hepatocellular carcinoma: genomic prognostic markers. Clin Cancer Res. 2010;16:4688–94.PubMedCrossRef
5.
go back to reference Hoshida Y, Moeini A, Alsinet C, Kojima K, Villanueva A. Gene signatures in the management of hepatocellular carcinoma. Semin Oncol. 2012;39:473–85.PubMedCrossRef Hoshida Y, Moeini A, Alsinet C, Kojima K, Villanueva A. Gene signatures in the management of hepatocellular carcinoma. Semin Oncol. 2012;39:473–85.PubMedCrossRef
6.
go back to reference Villanueva A, Hoshida Y, Battiston C, Tovar V, Sia D, Alsinet C, et al. Combining clinical, pathology, and gene expression data to predict recurrence of hepatocellular carcinoma. Gastroenterology. 2011;140:1501–12.e1502. Villanueva A, Hoshida Y, Battiston C, Tovar V, Sia D, Alsinet C, et al. Combining clinical, pathology, and gene expression data to predict recurrence of hepatocellular carcinoma. Gastroenterology. 2011;140:1501–12.e1502.
7.
go back to reference Simon RM, Paik S, Hayes DF. Use of archived specimens in evaluation of prognostic and predictive biomarkers. J Natl Cancer Inst. 2009;101:1446–52.PubMedCrossRef Simon RM, Paik S, Hayes DF. Use of archived specimens in evaluation of prognostic and predictive biomarkers. J Natl Cancer Inst. 2009;101:1446–52.PubMedCrossRef
8.
go back to reference Hoshida Y, Villanueva A, Kobayashi M, Peix J, Chiang DY, Camargo A, et al. Gene expression in fixed tissues and outcome in hepatocellular carcinoma. N Engl J Med. 2008;359:1995–2004.PubMedCrossRef Hoshida Y, Villanueva A, Kobayashi M, Peix J, Chiang DY, Camargo A, et al. Gene expression in fixed tissues and outcome in hepatocellular carcinoma. N Engl J Med. 2008;359:1995–2004.PubMedCrossRef
9.
go back to reference Hoshida Y. Nearest template prediction: a single-sample-based flexible class prediction with confidence assessment. PLoS One. 2010;5:e15543.PubMedCrossRef Hoshida Y. Nearest template prediction: a single-sample-based flexible class prediction with confidence assessment. PLoS One. 2010;5:e15543.PubMedCrossRef
10.
go back to reference Geiss GK, Bumgarner RE, Birditt B, Dahl T, Dowidar N, Dunaway DL, et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol. 2008;26:317–25.PubMedCrossRef Geiss GK, Bumgarner RE, Birditt B, Dahl T, Dowidar N, Dunaway DL, et al. Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol. 2008;26:317–25.PubMedCrossRef
11.
go back to reference Ozsolak F, Milos PM. RNA sequencing: advances, challenges and opportunities. Nat Rev Genet. 2011;12:87–98.PubMedCrossRef Ozsolak F, Milos PM. RNA sequencing: advances, challenges and opportunities. Nat Rev Genet. 2011;12:87–98.PubMedCrossRef
Metadata
Title
Prognostic Gene Signatures for Hepatocellular Carcinoma: What Are We Measuring?
Authors
Kenneth K. Tanabe, MD
Yujin Hoshida, MD, PhD
Publication date
01-11-2013
Publisher
Springer US
Published in
Annals of Surgical Oncology / Issue 12/2013
Print ISSN: 1068-9265
Electronic ISSN: 1534-4681
DOI
https://doi.org/10.1245/s10434-013-3071-x

Other articles of this Issue 12/2013

Annals of Surgical Oncology 12/2013 Go to the issue