Skip to main content
Top
Published in: Journal of Clinical Monitoring and Computing 1/2019

01-02-2019 | Original Research

Predicting delayed cerebral ischemia after subarachnoid hemorrhage using physiological time series data

Authors: Soojin Park, Murad Megjhani, Hans-Peter Frey, Edouard Grave, Chris Wiggins, Kalijah L. Terilli, David J. Roh, Angela Velazquez, Sachin Agarwal, E. Sander Connolly Jr., J. Michael Schmidt, Jan Claassen, Noemie Elhadad

Published in: Journal of Clinical Monitoring and Computing | Issue 1/2019

Login to get access

Abstract

To develop and validate a prediction model for delayed cerebral ischemia (DCI) after subarachnoid hemorrhage (SAH) using a temporal unsupervised feature engineering approach, demonstrating improved precision over standard features. 488 consecutive SAH admissions from 2006 to 2014 to a tertiary care hospital were included. Models were trained on 80%, while 20% were set aside for validation testing. Baseline information and standard grading scales were evaluated: age, sex, Hunt Hess grade, modified Fisher Scale (mFS), and Glasgow Coma Scale (GCS). An unsupervised approach applying random kernels was used to extract features from physiological time series (systolic and diastolic blood pressure, heart rate, respiratory rate, and oxygen saturation). Classifiers (Partial Least Squares, linear and kernel Support Vector Machines) were trained on feature subsets of the derivation dataset. Models were applied to the validation dataset. The performances of the best classifiers on the validation dataset are reported by feature subset. Standard grading scale (mFS): AUC 0.58. Combined demographics and grading scales: AUC 0.60. Random kernel derived physiologic features: AUC 0.74. Combined baseline and physiologic features with redundant feature reduction: AUC 0.77. Current DCI prediction tools rely on admission imaging and are advantageously simple to employ. However, using an agnostic and computationally inexpensive learning approach for high-frequency physiologic time series data, we demonstrated that our models achieve higher classification accuracy.
Literature
1.
go back to reference Suarez J. PRINCE Neurocritical Care Point-Prevalence Study Preliminary Results Revealed, vol. 9. Currents: News Magazine of the Neurocritical Care Society; 2014. Suarez J. PRINCE Neurocritical Care Point-Prevalence Study Preliminary Results Revealed, vol. 9. Currents: News Magazine of the Neurocritical Care Society; 2014.
2.
go back to reference Report of World Federation of Neurological Surgeons Committee on a Universal Subarachnoid Hemorrhage Grading Scale. J Neurosurg. 1988;68(6):985–6. Report of World Federation of Neurological Surgeons Committee on a Universal Subarachnoid Hemorrhage Grading Scale. J Neurosurg. 1988;68(6):985–6.
4.
go back to reference Qureshi AI, Suri MF, Nasar A, Kirmani JF, Divani AA, He W, Hopkins LN. Trends in hospitalization and mortality for subarachnoid hemorrhage and unruptured aneurysms in the United States. Neurosurgery 2005;57(1):1–8 (discussion 1–8).CrossRef Qureshi AI, Suri MF, Nasar A, Kirmani JF, Divani AA, He W, Hopkins LN. Trends in hospitalization and mortality for subarachnoid hemorrhage and unruptured aneurysms in the United States. Neurosurgery 2005;57(1):1–8 (discussion 1–8).CrossRef
5.
7.
go back to reference Roos YB, Dijkgraaf MG, Albrecht KW, Beenen LF, Groen RJ, de Haan RJ, Vermeulen M. Direct costs of modern treatment of aneurysmal subarachnoid hemorrhage in the first year after diagnosis. Stroke 2002;33(6):1595–9.CrossRef Roos YB, Dijkgraaf MG, Albrecht KW, Beenen LF, Groen RJ, de Haan RJ, Vermeulen M. Direct costs of modern treatment of aneurysmal subarachnoid hemorrhage in the first year after diagnosis. Stroke 2002;33(6):1595–9.CrossRef
8.
go back to reference Mayer SA, Kreiter KT, Copeland D, Bernardini GL, Bates JE, Peery S, Claassen J, Du YE, Connolly ES Jr. Global and domain-specific cognitive impairment and outcome after subarachnoid hemorrhage. Neurology. 2002;59(11):1750–8.CrossRef Mayer SA, Kreiter KT, Copeland D, Bernardini GL, Bates JE, Peery S, Claassen J, Du YE, Connolly ES Jr. Global and domain-specific cognitive impairment and outcome after subarachnoid hemorrhage. Neurology. 2002;59(11):1750–8.CrossRef
9.
go back to reference Hackett ML, Anderson CS. Health outcomes 1 year after subarachnoid hemorrhage: An international population-based study. The Australian Cooperative Research on Subarachnoid Hemorrhage Study Group. Neurology. 2000;55(5):658–62.CrossRef Hackett ML, Anderson CS. Health outcomes 1 year after subarachnoid hemorrhage: An international population-based study. The Australian Cooperative Research on Subarachnoid Hemorrhage Study Group. Neurology. 2000;55(5):658–62.CrossRef
10.
go back to reference Charpentier C, Audibert G, Guillemin F, Civit T, Ducrocq X, Bracard S, Hepner H, Picard L, Laxenaire MC. Multivariate analysis of predictors of cerebral vasospasm occurrence after aneurysmal subarachnoid hemorrhage. Stroke 1999;30(7):1402–8.CrossRef Charpentier C, Audibert G, Guillemin F, Civit T, Ducrocq X, Bracard S, Hepner H, Picard L, Laxenaire MC. Multivariate analysis of predictors of cerebral vasospasm occurrence after aneurysmal subarachnoid hemorrhage. Stroke 1999;30(7):1402–8.CrossRef
13.
go back to reference Rabinstein AA, Pichelmann MA, Friedman JA, Piepgras DG, Nichols DA, McIver JI, Toussaint LG 3rd, McClelland RL, Fulgham JR, Meyer FB, Atkinson JL, Wijdicks EF. Symptomatic vasospasm and outcomes following aneurysmal subarachnoid hemorrhage: a comparison between surgical repair and endovascular coil occlusion. J Neurosurg. 2003;98(2):319–25. https://doi.org/10.3171/jns.2003.98.2.0319.CrossRefPubMed Rabinstein AA, Pichelmann MA, Friedman JA, Piepgras DG, Nichols DA, McIver JI, Toussaint LG 3rd, McClelland RL, Fulgham JR, Meyer FB, Atkinson JL, Wijdicks EF. Symptomatic vasospasm and outcomes following aneurysmal subarachnoid hemorrhage: a comparison between surgical repair and endovascular coil occlusion. J Neurosurg. 2003;98(2):319–25. https://​doi.​org/​10.​3171/​jns.​2003.​98.​2.​0319.CrossRefPubMed
14.
go back to reference Kirmani JF, Qureshi AI, Hanel RA, Siddiqui AM, Safdar A, Yahia AM, Kim SH, Guterman LR, Hopkins LN. Silent cerebral infarctions in poor-grade patients with subarachnoid hemorrhage. Neurology 2002;58(7):A159. Kirmani JF, Qureshi AI, Hanel RA, Siddiqui AM, Safdar A, Yahia AM, Kim SH, Guterman LR, Hopkins LN. Silent cerebral infarctions in poor-grade patients with subarachnoid hemorrhage. Neurology 2002;58(7):A159.
16.
go back to reference Vergouwen MD, Vermeulen M, van Gijn J, Rinkel GJ, Wijdicks EF, Muizelaar JP, Mendelow AD, Juvela S, Yonas H, Terbrugge KG, Macdonald RL, Diringer MN, Broderick JP, Dreier JP, Roos YB. Definition of delayed cerebral ischemia after aneurysmal subarachnoid hemorrhage as an outcome event in clinical trials and observational studies: proposal of a multidisciplinary research group. Stroke 2010;41(10):2391–5. https://doi.org/10.1161/STROKEAHA.110.589275.CrossRefPubMed Vergouwen MD, Vermeulen M, van Gijn J, Rinkel GJ, Wijdicks EF, Muizelaar JP, Mendelow AD, Juvela S, Yonas H, Terbrugge KG, Macdonald RL, Diringer MN, Broderick JP, Dreier JP, Roos YB. Definition of delayed cerebral ischemia after aneurysmal subarachnoid hemorrhage as an outcome event in clinical trials and observational studies: proposal of a multidisciplinary research group. Stroke 2010;41(10):2391–5. https://​doi.​org/​10.​1161/​STROKEAHA.​110.​589275.CrossRefPubMed
18.
go back to reference Fisher CM, Kistler JP, Davis JM. Relation of cerebral vasospasm to subarachnoid hemorrhage visualized by computerized tomographic scanning. Neurosurgery 1980;6(1):1–9.CrossRef Fisher CM, Kistler JP, Davis JM. Relation of cerebral vasospasm to subarachnoid hemorrhage visualized by computerized tomographic scanning. Neurosurgery 1980;6(1):1–9.CrossRef
19.
go back to reference Claassen J, Bernardini GL, Kreiter K, Bates J, Du YE, Copeland D, Connolly ES, Mayer SA. Effect of cisternal and ventricular blood on risk of delayed cerebral ischemia after subarachnoid hemorrhage: the Fisher scale revisited. Stroke 2001;32(9):2012–20.CrossRef Claassen J, Bernardini GL, Kreiter K, Bates J, Du YE, Copeland D, Connolly ES, Mayer SA. Effect of cisternal and ventricular blood on risk of delayed cerebral ischemia after subarachnoid hemorrhage: the Fisher scale revisited. Stroke 2001;32(9):2012–20.CrossRef
20.
go back to reference Gaieski DF, Mikkelsen ME, Band RA, Pines JM, Massone R, Furia FF, Shofer FS, Goyal M. Impact of time to antibiotics on survival in patients with severe sepsis or septic shock in whom early goal-directed therapy was initiated in the emergency department. Criti Care Med. 2010;38(4):1045–53. https://doi.org/10.1097/CCM.0b013e3181cc4824.CrossRef Gaieski DF, Mikkelsen ME, Band RA, Pines JM, Massone R, Furia FF, Shofer FS, Goyal M. Impact of time to antibiotics on survival in patients with severe sepsis or septic shock in whom early goal-directed therapy was initiated in the emergency department. Criti Care Med. 2010;38(4):1045–53. https://​doi.​org/​10.​1097/​CCM.​0b013e3181cc4824​.CrossRef
23.
go back to reference Lindegaard KF, Nornes H, Bakke SJ, Sorteberg W, Nakstad P. Cerebral vasospasm diagnosis by means of angiography and blood velocity measurements. Acta Neurochir. 1989;100(1–2):12–24.CrossRef Lindegaard KF, Nornes H, Bakke SJ, Sorteberg W, Nakstad P. Cerebral vasospasm diagnosis by means of angiography and blood velocity measurements. Acta Neurochir. 1989;100(1–2):12–24.CrossRef
24.
go back to reference Krejza J, Szydlik P, Liebeskind DS, Kochanowicz J, Bronov O, Mariak Z, Melhem ER. Age and sex variability and normal reference values for the V(MCA)/V(ICA) index. AJNR 2005;26(4):730–5.PubMed Krejza J, Szydlik P, Liebeskind DS, Kochanowicz J, Bronov O, Mariak Z, Melhem ER. Age and sex variability and normal reference values for the V(MCA)/V(ICA) index. AJNR 2005;26(4):730–5.PubMed
27.
go back to reference Sekhar LN, Wechsler LR, Yonas H, Luyckx K, Obrist W. Value of transcranial Doppler examination in the diagnosis of cerebral vasospasm after subarachnoid hemorrhage. Neurosurgery 1988;22(5):813–21.CrossRef Sekhar LN, Wechsler LR, Yonas H, Luyckx K, Obrist W. Value of transcranial Doppler examination in the diagnosis of cerebral vasospasm after subarachnoid hemorrhage. Neurosurgery 1988;22(5):813–21.CrossRef
28.
go back to reference Lysakowski C, Walder B, Costanza MC, Tramer MR. Transcranial Doppler versus angiography in patients with vasospasm due to a ruptured cerebral aneurysm: A systematic review. Stroke 2001;32(10):2292–8.CrossRef Lysakowski C, Walder B, Costanza MC, Tramer MR. Transcranial Doppler versus angiography in patients with vasospasm due to a ruptured cerebral aneurysm: A systematic review. Stroke 2001;32(10):2292–8.CrossRef
43.
go back to reference Schulam P, Wigley F, Saria S. Clustering longitudinal clinical marker trajectories from electronic health data. Applications to phenotyping and endotype discovery. In: AAAI, Citeseer; 2015. pp. 2956–64. Schulam P, Wigley F, Saria S. Clustering longitudinal clinical marker trajectories from electronic health data. Applications to phenotyping and endotype discovery. In: AAAI, Citeseer; 2015. pp. 2956–64.
44.
go back to reference Nemati S, Adams R. Supervised learning in dynamic bayesian networks. Neural information processing systems (NIPS) workshop on deep learning and representation learning, Montreal; 2014. Nemati S, Adams R. Supervised learning in dynamic bayesian networks. Neural information processing systems (NIPS) workshop on deep learning and representation learning, Montreal; 2014.
45.
go back to reference Luo Y, Xin Y, Joshi R, Celi L, Szolovits P, Predicting ICU. Mortality risk by grouping temporal trends from a multivariate panel of physiologic measurements. In: AAAI, Phoenix; 2016. pp. 42–50. Luo Y, Xin Y, Joshi R, Celi L, Szolovits P, Predicting ICU. Mortality risk by grouping temporal trends from a multivariate panel of physiologic measurements. In: AAAI, Phoenix; 2016. pp. 42–50.
46.
go back to reference Saria S, Koller D, Penn A. Learning individual and population level traits from clinical temporal data. In: Proceeding of neural information processing systems (NIPS), predictive models in personalized medicine workshop; 2010. Saria S, Koller D, Penn A. Learning individual and population level traits from clinical temporal data. In: Proceeding of neural information processing systems (NIPS), predictive models in personalized medicine workshop; 2010.
47.
go back to reference Lipton ZC, Kale DC, Wetzell RC. (2015) Phenotyping of clinical time series with LSTM recurrent neural networks. arXiv preprint arXiv:151007641. Lipton ZC, Kale DC, Wetzell RC. (2015) Phenotyping of clinical time series with LSTM recurrent neural networks. arXiv preprint arXiv:151007641.
48.
go back to reference Lipton ZC, Kale DC, Elkan C, Wetzell R. (2015) Learning to diagnose with LSTM recurrent neural networks. ArXiv e-prints 1511. Lipton ZC, Kale DC, Elkan C, Wetzell R. (2015) Learning to diagnose with LSTM recurrent neural networks. ArXiv e-prints 1511.
49.
go back to reference Kale DC, Gong D, Che Z, Liu Y, Medioni G, Wetzel R, Ross P An examination of multivariate time series hashing with applications to health care. In: Data Mining (ICDM), 2014 IEEE international conference on, 2014. IEEE, pp 260–269. Kale DC, Gong D, Che Z, Liu Y, Medioni G, Wetzel R, Ross P An examination of multivariate time series hashing with applications to health care. In: Data Mining (ICDM), 2014 IEEE international conference on, 2014. IEEE, pp 260–269.
50.
go back to reference Bahadori MT, Kale DC, Fan Y, Liu Y. Functional subspace clustering with application to time series. In: ICML, Lille; 2015. pp. 228–37. Bahadori MT, Kale DC, Fan Y, Liu Y. Functional subspace clustering with application to time series. In: ICML, Lille; 2015. pp. 228–37.
51.
go back to reference Marlin BM, Kale DC, Khemani RG. Wetzel RC Unsupervised pattern discovery in electronic health care data using probabilistic clustering models. In: Proceedings of the 2nd ACM SIGHIT international health informatics symposium, 2012. ACM, pp 389–98. Marlin BM, Kale DC, Khemani RG. Wetzel RC Unsupervised pattern discovery in electronic health care data using probabilistic clustering models. In: Proceedings of the 2nd ACM SIGHIT international health informatics symposium, 2012. ACM, pp 389–98.
52.
go back to reference Rahimi A, Recht B. Random features for large-scale kernel machines. NIPS. 2007;3(4):5. Rahimi A, Recht B. Random features for large-scale kernel machines. NIPS. 2007;3(4):5.
53.
go back to reference Rahimi A, Recht B. Weighted sums of random kitchen sinks: replacing minimization with randomization in learning. Adv Neural Inform Process Syst. 2008;885:1313–20. Rahimi A, Recht B. Weighted sums of random kitchen sinks: replacing minimization with randomization in learning. Adv Neural Inform Process Syst. 2008;885:1313–20.
54.
go back to reference Saxe A, Koh PW, Chen Z, Bhand M, Suresh B, Ng AY. (2011) On random weights and unsupervised feature learning. Paper presented at the proceedings of the 28th international conference on machine learning (ICML-11). Saxe A, Koh PW, Chen Z, Bhand M, Suresh B, Ng AY. (2011) On random weights and unsupervised feature learning. Paper presented at the proceedings of the 28th international conference on machine learning (ICML-11).
57.
go back to reference Ding C, Peng H. Minimum redundancy feature selection from microarray gene expression data. J Bioinform Comput Biol. 2005;3(2):185–205.CrossRef Ding C, Peng H. Minimum redundancy feature selection from microarray gene expression data. J Bioinform Comput Biol. 2005;3(2):185–205.CrossRef
58.
go back to reference Peng HC, Ding C, Long FH. Minimum redundancy—maximum relevance feature selection. IEEE Intell Syst. 2005;20(6):70–1. Peng HC, Ding C, Long FH. Minimum redundancy—maximum relevance feature selection. IEEE Intell Syst. 2005;20(6):70–1.
59.
go back to reference Huang YM, Du SX. (2005) Weighted support vector machine for classification with uneven training class sizes. In: Proceedings of 2005 international conference on machine learning and cybernetics, Guangzhou, vol. 1–9, pp 4365–69. Huang YM, Du SX. (2005) Weighted support vector machine for classification with uneven training class sizes. In: Proceedings of 2005 international conference on machine learning and cybernetics, Guangzhou, vol. 1–9, pp 4365–69.
61.
go back to reference Geladi P, Kowalski BR. Partial least-squares regression: a tutorial. Anal Chim Acta. 1986;185:1–17.CrossRef Geladi P, Kowalski BR. Partial least-squares regression: a tutorial. Anal Chim Acta. 1986;185:1–17.CrossRef
Metadata
Title
Predicting delayed cerebral ischemia after subarachnoid hemorrhage using physiological time series data
Authors
Soojin Park
Murad Megjhani
Hans-Peter Frey
Edouard Grave
Chris Wiggins
Kalijah L. Terilli
David J. Roh
Angela Velazquez
Sachin Agarwal
E. Sander Connolly Jr.
J. Michael Schmidt
Jan Claassen
Noemie Elhadad
Publication date
01-02-2019
Publisher
Springer Netherlands
Published in
Journal of Clinical Monitoring and Computing / Issue 1/2019
Print ISSN: 1387-1307
Electronic ISSN: 1573-2614
DOI
https://doi.org/10.1007/s10877-018-0132-5

Other articles of this Issue 1/2019

Journal of Clinical Monitoring and Computing 1/2019 Go to the issue