Skip to main content
Top
Published in: International Journal of Legal Medicine 3/2019

01-05-2019 | Population Data

Population data for 21 autosomal STR loci (GlobalFiler kit) in two Mexican-Mestizo population from the northwest, Mexico

Authors: G. Martínez-Cortés, F. Zuñiga-Chiquette, A. S. Celorio-Sánchez, E. Ruiz García, A. B. Antelo-Figueroa, V. Dalpozzo-Valenzuela, A. Valenzuela-Coronado, H. Rangel-Villalobos

Published in: International Journal of Legal Medicine | Issue 3/2019

Login to get access

Abstract

Mexican Mestizos (admixed) have been poorly studied for short tandem repeats (STRs) included for new human identification (HID) kits, such as the GlobalFiler PCR Amplification kit. Therefore, this kit was analyzed in 784 unrelated volunteers from the city of Tijuana (n = 381) and Sonora state (n = 403) in the northwest region of Mexico. Allele frequencies, forensic parameters, Hardy–Weinberg equilibrium, and linkage equilibrium were estimated or evaluated for 21 autosomal STRs, respectively. For this HID kit, the combined power of discrimination (PD) was > 0.99999999999999 (RMP range = 1.23 to 3.0 × 10−25), and the combined power of exclusion (PE) were 0.999999993 and 0.999999997 in Tijuana city and Sonora state, respectively. Interpopulation analyses based on STRs of the GlobalFiler kit was performed, including four Mexican Native American, one Mexican Mestizo, and four ethnic American populations (USA), previously studied. The low—but significant—differentiation observed among Mexican Mestizos (FST = 0.0969%; p = 0.02584) justifies the creation of STR databases for HID purposes in this country. In brief, results allow the confident use of the GlobalFiler kit for HID purposes in Mestizo population from the Northwest region Mexico.
Appendix
Available only for authorised users
Literature
1.
go back to reference Rubi-Castellanos R, Martinez-Cortes G, Munoz-Valle JF, Gonzalez-Martin A, Cerda-Flores RM, Anaya-Palafox M, Rangel-Villalobos H (2009) Pre-Hispanic Mesoamerican demography approximates the present-day ancestry of Mestizos throughout the territory of Mexico. Am J Phys Anthropol 139(3):284–294CrossRef Rubi-Castellanos R, Martinez-Cortes G, Munoz-Valle JF, Gonzalez-Martin A, Cerda-Flores RM, Anaya-Palafox M, Rangel-Villalobos H (2009) Pre-Hispanic Mesoamerican demography approximates the present-day ancestry of Mestizos throughout the territory of Mexico. Am J Phys Anthropol 139(3):284–294CrossRef
2.
go back to reference Salazar-Flores J, Zuniga-Chiquette F, Rubi-Castellanos R, Alvarez-Miranda JL, Zetina-Hernandez A, Martinez-Sevilla VM, Gonzalez-Andrade F, Corach D, Vullo C, Alvarez JC, Lorente JA, Sanchez-Diz P, Herrera RJ, Cerda-Flores RM, Munoz-Valle JF, Rangel-Villalobos H (2015) Admixture and genetic relationships of Mexican Mestizos regarding Latin American and Caribbean populations based on 13 CODIS-STRs. Homo 66(1):44–59CrossRef Salazar-Flores J, Zuniga-Chiquette F, Rubi-Castellanos R, Alvarez-Miranda JL, Zetina-Hernandez A, Martinez-Sevilla VM, Gonzalez-Andrade F, Corach D, Vullo C, Alvarez JC, Lorente JA, Sanchez-Diz P, Herrera RJ, Cerda-Flores RM, Munoz-Valle JF, Rangel-Villalobos H (2015) Admixture and genetic relationships of Mexican Mestizos regarding Latin American and Caribbean populations based on 13 CODIS-STRs. Homo 66(1):44–59CrossRef
3.
go back to reference Ramos-González B, Aguilar-Velázquez JA, Chávez-Briones ML, Delgado-Chavarría JR, Alfaro-Lopez E, Rangel-Villalobos H (2016) Population data of 24 STRs in Mexican-Mestizo population from Monterrey, Nuevo Leon (northeast, Mexico) based on Powerplex® Fusion and GlobalFiler® kits. Forensic Sci Int Genet 21:e15–e17CrossRef Ramos-González B, Aguilar-Velázquez JA, Chávez-Briones ML, Delgado-Chavarría JR, Alfaro-Lopez E, Rangel-Villalobos H (2016) Population data of 24 STRs in Mexican-Mestizo population from Monterrey, Nuevo Leon (northeast, Mexico) based on Powerplex® Fusion and GlobalFiler® kits. Forensic Sci Int Genet 21:e15–e17CrossRef
4.
go back to reference Moreno-Estrada A, Gignoux CR, Fernández-López JC, Zakharia F, Sikora M, Contreras AV, Acuña-Alonzo V, Sandoval K, Eng C, Romero-Hidalgo S, Ortiz-Tello P, Robles V, Kenny EE, Nuño-Arana I, Barquera-Lozano R, Macín-Pérez G, Granados-Arriola J, Huntsman S, Galanter JM, Via M, Ford JG, Chapela R, Rodriguez-Cintron W, Rodríguez-Santana JR, Romieu I, Sienra-Monge JJ, del Rio Navarro B, London SJ, Ruiz-Linares A, Garcia-Herrera R, Estrada K, Hidalgo-Miranda A, Jimenez-Sanchez G, Carnevale A, Soberón X, Canizales-Quinteros S, Rangel-Villalobos H, Silva-Zolezzi I, Burchard EG, Bustamante CD (2014) The genetics of Mexico recapitulates Native American substructure and affects biomedical traits. Science 344(6189):1280–1285CrossRef Moreno-Estrada A, Gignoux CR, Fernández-López JC, Zakharia F, Sikora M, Contreras AV, Acuña-Alonzo V, Sandoval K, Eng C, Romero-Hidalgo S, Ortiz-Tello P, Robles V, Kenny EE, Nuño-Arana I, Barquera-Lozano R, Macín-Pérez G, Granados-Arriola J, Huntsman S, Galanter JM, Via M, Ford JG, Chapela R, Rodriguez-Cintron W, Rodríguez-Santana JR, Romieu I, Sienra-Monge JJ, del Rio Navarro B, London SJ, Ruiz-Linares A, Garcia-Herrera R, Estrada K, Hidalgo-Miranda A, Jimenez-Sanchez G, Carnevale A, Soberón X, Canizales-Quinteros S, Rangel-Villalobos H, Silva-Zolezzi I, Burchard EG, Bustamante CD (2014) The genetics of Mexico recapitulates Native American substructure and affects biomedical traits. Science 344(6189):1280–1285CrossRef
6.
go back to reference Tereba A (1999) Tools for analysis of population statistics. Profiles in DNA 3:14–16 Tereba A (1999) Tools for analysis of population statistics. Profiles in DNA 3:14–16
7.
go back to reference National Research Council (NRC) Committee on DNA Forensic Science (1996) The evaluation of forensic DNA evidence. National Academic Press, Washington, D.C National Research Council (NRC) Committee on DNA Forensic Science (1996) The evaluation of forensic DNA evidence. National Academic Press, Washington, D.C
9.
go back to reference Excoffier L, Lischer H (2010) Arlequin suite ver3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3):564–567CrossRef Excoffier L, Lischer H (2010) Arlequin suite ver3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10(3):564–567CrossRef
10.
go back to reference Hill CR, Duewer DL, Kline MC, Coble MD, Butler JM (2013) U.S. population data for 29 autosomal STR loci. Forensic Sci Int Genet 7:e82–e83CrossRef Hill CR, Duewer DL, Kline MC, Coble MD, Butler JM (2013) U.S. population data for 29 autosomal STR loci. Forensic Sci Int Genet 7:e82–e83CrossRef
11.
go back to reference Ng J, Oldt RF, McCulloh KL, Weise JA, Viray J, Budowle B, Smith DG, Kanthaswamy S (2016) Native American population data based on the GlobalFiler® autosomal STR loci. Forensic Sci Int Genet 24:e12–e13CrossRef Ng J, Oldt RF, McCulloh KL, Weise JA, Viray J, Budowle B, Smith DG, Kanthaswamy S (2016) Native American population data based on the GlobalFiler® autosomal STR loci. Forensic Sci Int Genet 24:e12–e13CrossRef
12.
go back to reference Page RD (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12(4):357–358PubMed Page RD (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12(4):357–358PubMed
13.
go back to reference IBM (2010) SPSS Statistics for Windows, 19.0 edn. IBM Corp, Armonk IBM (2010) SPSS Statistics for Windows, 19.0 edn. IBM Corp, Armonk
14.
go back to reference Rangel-Villalobos H, Martinez-Sevilla VM, Martínez-Cortes G, Aguilar-Velázquez JA, Sosa-Macias M, Rubi-Castellanos R, Gonzalez-Martin A (2016) Importance of the geographic barriers to promote gene drift and avoid (pre and post-Columbian) gene flow in Mexican Native groups: evidence from forensic STR loci. Am J Phys Anthropol 160(2):298–316CrossRef Rangel-Villalobos H, Martinez-Sevilla VM, Martínez-Cortes G, Aguilar-Velázquez JA, Sosa-Macias M, Rubi-Castellanos R, Gonzalez-Martin A (2016) Importance of the geographic barriers to promote gene drift and avoid (pre and post-Columbian) gene flow in Mexican Native groups: evidence from forensic STR loci. Am J Phys Anthropol 160(2):298–316CrossRef
Metadata
Title
Population data for 21 autosomal STR loci (GlobalFiler kit) in two Mexican-Mestizo population from the northwest, Mexico
Authors
G. Martínez-Cortés
F. Zuñiga-Chiquette
A. S. Celorio-Sánchez
E. Ruiz García
A. B. Antelo-Figueroa
V. Dalpozzo-Valenzuela
A. Valenzuela-Coronado
H. Rangel-Villalobos
Publication date
01-05-2019
Publisher
Springer Berlin Heidelberg
Published in
International Journal of Legal Medicine / Issue 3/2019
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-018-1950-1

Other articles of this Issue 3/2019

International Journal of Legal Medicine 3/2019 Go to the issue