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Published in: Orphanet Journal of Rare Diseases 1/2022

Open Access 01-12-2022 | Pigmentary Retinopathy | Research

Expanding the phenotype of TTLL5-associated retinal dystrophy: a case series

Authors: Jin Kyun Oh, José G. Vargas Del Valle, Jose Ronaldo Lima de Carvalho Jr, Young Joo Sun, Sarah R. Levi, Joseph Ryu, Jing Yang, Takayuki Nagasaki, Andres Emanuelli, Nailyn Rasool, Rando Allikmets, Janet R. Sparrow, Natalio J. Izquierdo, Jacque L. Duncan, Vinit B. Mahajan, Stephen H. Tsang

Published in: Orphanet Journal of Rare Diseases | Issue 1/2022

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Abstract

Background

Inherited retinal dystrophies describe a heterogeneous group of retinal diseases that lead to the irreversible degeneration of rod and cone photoreceptors and eventual blindness. Recessive loss-of-function mutations in Tubulin Tyrosine Ligase Like 5 (TTLL5) represent a recently described cause of inherited cone–rod and cone dystrophy. This study describes the unusual phenotypes of three patients with autosomal recessive mutations in TTLL5. Examination of these patients included funduscopic evaluation, spectral-domain optical coherence tomography, short-wavelength autofluorescence, and full-field electroretinography (ffERG). Genetic diagnoses were confirmed using whole exome capture. Protein modeling of the identified variants was performed to explore potential genotype–phenotype correlations.

Results

Genetic testing revealed five novel variants in TTLL5 in three unrelated patients with retinal dystrophy. Clinical imaging demonstrated features of sectoral cone–rod dystrophy and cone dystrophy, with phenotypic variability seen across all three patients. One patient also developed high-frequency hearing loss during a similar time period as the onset of retinal disease, potentially suggestive of a syndromic disorder. Retinal structure findings were corroborated with functional measures including ffERG findings that supported these diagnoses. Modeling of the five variants suggest that they cause different effects on protein function, providing a potential reason for genotype–phenotype correlation in these patients.

Conclusions

The authors report retinal phenotypic findings in three unrelated patients with novel mutations causing autosomal recessive TTLL5-mediated retinal dystrophy. These findings broaden the understanding of the phenotypes associated with TTLL5-mediated retinal disease and suggest that mutations in TTLL5 should be considered as a potential cause of sectoral retinal dystrophy in addition to cone–rod and cone dystrophies.
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Literature
1.
go back to reference Bedoni N, Haer-Wigman L, Vaclavik V, et al. Mutations in the polyglutamylase gene TTLL5, expressed in photoreceptor cells and spermatozoa, are associated with cone–rod degeneration and reduced male fertility. Hum Mol Genet. 2016;25(20):4546–55.PubMed Bedoni N, Haer-Wigman L, Vaclavik V, et al. Mutations in the polyglutamylase gene TTLL5, expressed in photoreceptor cells and spermatozoa, are associated with cone–rod degeneration and reduced male fertility. Hum Mol Genet. 2016;25(20):4546–55.PubMed
2.
go back to reference Janke C, Rogowski K, Wloga D, Regnard C, Kajava AV, Strub JM, Temurak N, van Dijk J, Boucher D, van Dorsselaer A, et al. Tubulin polyglutamylase enzymes are members of the TTL domain protein family. Science. 2005;308(5729):1758–62.CrossRef Janke C, Rogowski K, Wloga D, Regnard C, Kajava AV, Strub JM, Temurak N, van Dijk J, Boucher D, van Dorsselaer A, et al. Tubulin polyglutamylase enzymes are members of the TTL domain protein family. Science. 2005;308(5729):1758–62.CrossRef
3.
go back to reference Janke C, Rogowski K, van Dijk J. Polyglutamylation: a fine-regulator of protein function? “Protein modifications: beyond the usual suspects” review series. EMBO Rep. 2008;9(7):636–41.CrossRef Janke C, Rogowski K, van Dijk J. Polyglutamylation: a fine-regulator of protein function? “Protein modifications: beyond the usual suspects” review series. EMBO Rep. 2008;9(7):636–41.CrossRef
4.
go back to reference Lee GS, He Y, Dougherty EJ, Jimenez-Movilla M, Avella M, Grullon S, Sharlin DS, Guo C, Blackford JA Jr, Awasthi S, et al. Disruption of Ttll5/stamp gene (tubulin tyrosine ligase-like protein 5/SRC-1 and TIF2-associated modulatory protein gene) in male mice causes sperm malformation and infertility. J Biol Chem. 2013;288(21):15167–80.CrossRef Lee GS, He Y, Dougherty EJ, Jimenez-Movilla M, Avella M, Grullon S, Sharlin DS, Guo C, Blackford JA Jr, Awasthi S, et al. Disruption of Ttll5/stamp gene (tubulin tyrosine ligase-like protein 5/SRC-1 and TIF2-associated modulatory protein gene) in male mice causes sperm malformation and infertility. J Biol Chem. 2013;288(21):15167–80.CrossRef
5.
go back to reference Mykytyn K, Mullins RF, Andrews M, Chiang AP, Swiderski RE, Yang B, Braun T, Casavant T, Stone EM, Sheffield VC. Bardet–Biedl syndrome type 4 (BBS4)-null mice implicate Bbs4 in flagella formation but not global cilia assembly. Proc Natl Acad Sci U S A. 2004;101(23):8664–9.CrossRef Mykytyn K, Mullins RF, Andrews M, Chiang AP, Swiderski RE, Yang B, Braun T, Casavant T, Stone EM, Sheffield VC. Bardet–Biedl syndrome type 4 (BBS4)-null mice implicate Bbs4 in flagella formation but not global cilia assembly. Proc Natl Acad Sci U S A. 2004;101(23):8664–9.CrossRef
6.
go back to reference Sergouniotis PI, Chakarova C, Murphy C, Becker M, Lenassi E, Arno G, Lek M, MacArthur DG, Consortium UC-E, Bhattacharya SS, et al. Biallelic variants in TTLL5, encoding a tubulin glutamylase, cause retinal dystrophy. Am J Hum Genet. 2014;94(5):760–9.CrossRef Sergouniotis PI, Chakarova C, Murphy C, Becker M, Lenassi E, Arno G, Lek M, MacArthur DG, Consortium UC-E, Bhattacharya SS, et al. Biallelic variants in TTLL5, encoding a tubulin glutamylase, cause retinal dystrophy. Am J Hum Genet. 2014;94(5):760–9.CrossRef
7.
go back to reference Sun X, Park JH, Gumerson J, Wu Z, Swaroop A, Qian H, Roll-Mecak A, Li T. Loss of RPGR glutamylation underlies the pathogenic mechanism of retinal dystrophy caused by TTLL5 mutations. Proc Natl Acad Sci U S A. 2016;113(21):E2925–2934.PubMedPubMedCentral Sun X, Park JH, Gumerson J, Wu Z, Swaroop A, Qian H, Roll-Mecak A, Li T. Loss of RPGR glutamylation underlies the pathogenic mechanism of retinal dystrophy caused by TTLL5 mutations. Proc Natl Acad Sci U S A. 2016;113(21):E2925–2934.PubMedPubMedCentral
8.
go back to reference Dias MS, Hamel CP, Meunier I, et al. Novel splice-site mutation in TTLL5 causes cone dystrophy in a consanguineous family. Mol Vis. 2017;23:131–9.PubMedPubMedCentral Dias MS, Hamel CP, Meunier I, et al. Novel splice-site mutation in TTLL5 causes cone dystrophy in a consanguineous family. Mol Vis. 2017;23:131–9.PubMedPubMedCentral
9.
go back to reference Smirnov V, Grunewald O, Muller J, et al. Novel TTLL5 variants associated with cone–rod dystrophy and early-onset severe retinal dystrophy. Int J Mol Sci. 2021;22(12):6410.CrossRef Smirnov V, Grunewald O, Muller J, et al. Novel TTLL5 variants associated with cone–rod dystrophy and early-onset severe retinal dystrophy. Int J Mol Sci. 2021;22(12):6410.CrossRef
10.
go back to reference Cheng J, Maquat LE. Nonsense codons can reduce the abundance of nuclear mRNA without affecting the abundance of pre-mRNA or the half-life of cytoplasmic mRNA. Mol Cell Biol. 1993;13(3):1892–902.PubMedPubMedCentral Cheng J, Maquat LE. Nonsense codons can reduce the abundance of nuclear mRNA without affecting the abundance of pre-mRNA or the half-life of cytoplasmic mRNA. Mol Cell Biol. 1993;13(3):1892–902.PubMedPubMedCentral
11.
go back to reference Wagenaar M, van Aarem A, Huygen P, Pieke-Dahl S, Kimberling W, Cremers C. Hearing impairment related to age in Usher syndrome types 1B and 2A. Arch Otolaryngol Head Neck Surg. 1999;125(4):441–5.CrossRef Wagenaar M, van Aarem A, Huygen P, Pieke-Dahl S, Kimberling W, Cremers C. Hearing impairment related to age in Usher syndrome types 1B and 2A. Arch Otolaryngol Head Neck Surg. 1999;125(4):441–5.CrossRef
12.
go back to reference Liu H, Pecka JL, Zhang Q, Soukup GA, Beisel KW, He DZ. Characterization of transcriptomes of cochlear inner and outer hair cells. J Neurosci. 2014;34(33):11085–95.CrossRef Liu H, Pecka JL, Zhang Q, Soukup GA, Beisel KW, He DZ. Characterization of transcriptomes of cochlear inner and outer hair cells. J Neurosci. 2014;34(33):11085–95.CrossRef
13.
go back to reference Elkon R, Milon B, Morrison L, et al. RFX transcription factors are essential for hearing in mice. Nat Commun. 2015;6:8549.CrossRef Elkon R, Milon B, Morrison L, et al. RFX transcription factors are essential for hearing in mice. Nat Commun. 2015;6:8549.CrossRef
14.
go back to reference Scheffer DI, Shen J, Corey DP, Chen ZY. Gene expression by mouse inner ear hair cells during development. J Neurosci. 2015;35(16):6366–80.CrossRef Scheffer DI, Shen J, Corey DP, Chen ZY. Gene expression by mouse inner ear hair cells during development. J Neurosci. 2015;35(16):6366–80.CrossRef
15.
go back to reference Liu H, Chen L, Giffen KP, et al. Cell-specific transcriptome analysis shows that adult pillar and deiters’ cells express genes encoding machinery for specializations of cochlear hair cells. Front Mol Neurosci. 2018;11:356.CrossRef Liu H, Chen L, Giffen KP, et al. Cell-specific transcriptome analysis shows that adult pillar and deiters’ cells express genes encoding machinery for specializations of cochlear hair cells. Front Mol Neurosci. 2018;11:356.CrossRef
16.
go back to reference Shen J, Scheffer DI, Kwan KY, Corey DP. SHIELD: an integrative gene expression database for inner ear research. Database (Oxford). 2015;2015:bav071.CrossRef Shen J, Scheffer DI, Kwan KY, Corey DP. SHIELD: an integrative gene expression database for inner ear research. Database (Oxford). 2015;2015:bav071.CrossRef
17.
go back to reference McCulloch DL, Marmor MF, Brigell MG, et al. ISCEV Standard for full-field clinical electroretinography (2015 update). Doc Ophthalmol. 2015;130(1):1–12.CrossRef McCulloch DL, Marmor MF, Brigell MG, et al. ISCEV Standard for full-field clinical electroretinography (2015 update). Doc Ophthalmol. 2015;130(1):1–12.CrossRef
18.
go back to reference Richards S, Aziz N, Bale S, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405–24.CrossRef Richards S, Aziz N, Bale S, et al. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med. 2015;17(5):405–24.CrossRef
19.
go back to reference Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ. The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc. 2015;10(6):845–58.CrossRef Kelley LA, Mezulis S, Yates CM, Wass MN, Sternberg MJ. The Phyre2 web portal for protein modeling, prediction and analysis. Nat Protoc. 2015;10(6):845–58.CrossRef
20.
go back to reference Garnham CP, Vemu A, Wilson-Kubalek EM, Yu I, Szyk A, Lander GC, Milligan RA, Roll-Mecak A. Multivalent microtubule recognition by tubulin tyrosine ligase-like family glutamylases. Cell. 2015;161(5):1112–23.CrossRef Garnham CP, Vemu A, Wilson-Kubalek EM, Yu I, Szyk A, Lander GC, Milligan RA, Roll-Mecak A. Multivalent microtubule recognition by tubulin tyrosine ligase-like family glutamylases. Cell. 2015;161(5):1112–23.CrossRef
Metadata
Title
Expanding the phenotype of TTLL5-associated retinal dystrophy: a case series
Authors
Jin Kyun Oh
José G. Vargas Del Valle
Jose Ronaldo Lima de Carvalho Jr
Young Joo Sun
Sarah R. Levi
Joseph Ryu
Jing Yang
Takayuki Nagasaki
Andres Emanuelli
Nailyn Rasool
Rando Allikmets
Janet R. Sparrow
Natalio J. Izquierdo
Jacque L. Duncan
Vinit B. Mahajan
Stephen H. Tsang
Publication date
01-12-2022
Publisher
BioMed Central
Published in
Orphanet Journal of Rare Diseases / Issue 1/2022
Electronic ISSN: 1750-1172
DOI
https://doi.org/10.1186/s13023-022-02295-9

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