Skip to main content
Top
Published in: European Journal of Clinical Microbiology & Infectious Diseases 11/2008

01-11-2008 | Article

Occurrence of group A rotavirus mixed P genotypes infections in children living in Goiânia-Goiás, Brazil

Authors: E. R. L. Freitas, C. M. A. Soares, F. S. Fiaccadori, M. Souza, J. A. Parente, P. S. S. Costa, D. D. P. Cardoso

Published in: European Journal of Clinical Microbiology & Infectious Diseases | Issue 11/2008

Login to get access

Abstract

Group A rotaviruses (RVA) are the main causing agents of acute gastroenteritis worldwide, having a great impact on childhood mortality in developing countries. The objective of this study was to identify RVA-positive fecal samples with mixed P genotypes by hemi-nested reverse transcriptase-polymerase chain reaction (RT-PCR), followed by sequencing confirmation. Our results showed that, from the 81 RVA-positive samples, 25 were positive for more than one P genotype by hemi-nested RT-PCR. Of these 25 samples, 12 (48%) had their mixed P genotypes confirmed by sequencing and, from these, 10 were identified as P[6]P[8], one as P[4]P[6], and one as P[4]P[6]P[8]. Our results confirm the occurrence of RVA mixed infections among children in Brazil and reinforce the importance of the constant monitoring of RVA circulating strains for the efficacy of control/prevention against these agents.
Literature
1.
go back to reference Parashar UD, Hummelman EG, Bresee JS et al (2003) Global illness and deaths caused by rotavirus disease in children. Emerg Infect Dis 9:565–572PubMed Parashar UD, Hummelman EG, Bresee JS et al (2003) Global illness and deaths caused by rotavirus disease in children. Emerg Infect Dis 9:565–572PubMed
2.
go back to reference Kapikian AZ, Hoshino Y, Chanock RM (2001) Rotaviruses. In: Knipe DM, Howley PM (eds) Fields virology, 4th edn. Lippincott Williams & Wilkins, Philadelphia Kapikian AZ, Hoshino Y, Chanock RM (2001) Rotaviruses. In: Knipe DM, Howley PM (eds) Fields virology, 4th edn. Lippincott Williams & Wilkins, Philadelphia
3.
go back to reference Rao CD, Gowda K, Yugandar Reddy BS (2000) Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses. Virology 276:104–113PubMedCrossRef Rao CD, Gowda K, Yugandar Reddy BS (2000) Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine rotaviruses. Virology 276:104–113PubMedCrossRef
4.
go back to reference Estes MK (2001) Rotaviruses and their replication. In: Knipe DM, Howley PM (eds) Fields virology, 4th edn. Lippincott Williams & Wilkins, Philadelphia Estes MK (2001) Rotaviruses and their replication. In: Knipe DM, Howley PM (eds) Fields virology, 4th edn. Lippincott Williams & Wilkins, Philadelphia
5.
go back to reference Rahman M, Matthijnssens J, Nahar S et al (2005) Characterization of a novel P[25],G11 human group a rotavirus. J Clin Microbiol 43:3208–3212PubMedCrossRef Rahman M, Matthijnssens J, Nahar S et al (2005) Characterization of a novel P[25],G11 human group a rotavirus. J Clin Microbiol 43:3208–3212PubMedCrossRef
6.
go back to reference Martella V, Ciarlet M, Bányai K et al (2006) Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain. Virology 346:301–311PubMedCrossRef Martella V, Ciarlet M, Bányai K et al (2006) Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain. Virology 346:301–311PubMedCrossRef
7.
go back to reference Steyer A, Poljsak-Prijatelj M, Barlic-Maganja D et al (2007) Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia. Virology 359:272–282CrossRef Steyer A, Poljsak-Prijatelj M, Barlic-Maganja D et al (2007) Molecular characterization of a new porcine rotavirus P genotype found in an asymptomatic pig in Slovenia. Virology 359:272–282CrossRef
8.
go back to reference Khamrin P, Maneekarn N, Peerakome S et al (2007) Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain. Virology 361:243–252PubMedCrossRef Khamrin P, Maneekarn N, Peerakome S et al (2007) Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain. Virology 361:243–252PubMedCrossRef
10.
go back to reference Palombo EA (2002) Genetic analysis of Group A rotaviruses: evidence for interspecies transmission of rotavirus genes. Virus Genes 24:11–20PubMedCrossRef Palombo EA (2002) Genetic analysis of Group A rotaviruses: evidence for interspecies transmission of rotavirus genes. Virus Genes 24:11–20PubMedCrossRef
11.
go back to reference Gentsch JR, Woods PA, Ramachandran M et al (1996) Review of G and P typing results from a global collection of rotavirus strains: implications for vaccine development. J Infect Dis 174:S30–S36PubMed Gentsch JR, Woods PA, Ramachandran M et al (1996) Review of G and P typing results from a global collection of rotavirus strains: implications for vaccine development. J Infect Dis 174:S30–S36PubMed
12.
go back to reference Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29–56PubMedCrossRef Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15:29–56PubMedCrossRef
13.
go back to reference Fischer TK, Page NA, Griffin DD et al (2003) Characterization of incompletely typed rotavirus strains from Guinea-Bissau: identification of G8 and G9 types and a high frequency of mixed infections. Virology 311:125–133PubMedCrossRef Fischer TK, Page NA, Griffin DD et al (2003) Characterization of incompletely typed rotavirus strains from Guinea-Bissau: identification of G8 and G9 types and a high frequency of mixed infections. Virology 311:125–133PubMedCrossRef
14.
go back to reference Rennels MB, Glass RI, Dennehy PH et al (1996) Safety and efficacy of high-dose rhesus human reassortant rotavirus vaccines—report of the National Multicenter Trial. United States Rotavirus Vaccine Efficacy Group. Pediatrics 97:7–13PubMed Rennels MB, Glass RI, Dennehy PH et al (1996) Safety and efficacy of high-dose rhesus human reassortant rotavirus vaccines—report of the National Multicenter Trial. United States Rotavirus Vaccine Efficacy Group. Pediatrics 97:7–13PubMed
15.
go back to reference Pereira HG, Azeredo RS, Leite JPG et al (1985) A combined enzyme immunoassay for rotavirus and adenovirus (EIARA). J Virol Methods 10:21–28PubMedCrossRef Pereira HG, Azeredo RS, Leite JPG et al (1985) A combined enzyme immunoassay for rotavirus and adenovirus (EIARA). J Virol Methods 10:21–28PubMedCrossRef
16.
go back to reference Pereira HG, Leite JPG, Azeredo RS et al (1983) An atypical rotavirus detected in a child with gastroenteritis in Rio de Janeiro, Brazil. Mem Inst Oswaldo Cruz 78:245–250PubMed Pereira HG, Leite JPG, Azeredo RS et al (1983) An atypical rotavirus detected in a child with gastroenteritis in Rio de Janeiro, Brazil. Mem Inst Oswaldo Cruz 78:245–250PubMed
17.
go back to reference Boom R, Sol CJA, Salimans MMM et al (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28:495–503PubMed Boom R, Sol CJA, Salimans MMM et al (1990) Rapid and simple method for purification of nucleic acids. J Clin Microbiol 28:495–503PubMed
18.
go back to reference Cardoso DDP, Fiaccadori FS, Souza MBLD et al (2002) Detection and genotyping of astroviruses from children with acute gastroenteritis from Goiânia, Goiás, Brazil. Med Sci Monit 8:CR624–CR628 Cardoso DDP, Fiaccadori FS, Souza MBLD et al (2002) Detection and genotyping of astroviruses from children with acute gastroenteritis from Goiânia, Goiás, Brazil. Med Sci Monit 8:CR624–CR628
19.
go back to reference Gentsch JR, Glass RI, Woods P et al (1992) Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365–1373PubMed Gentsch JR, Glass RI, Woods P et al (1992) Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 30:1365–1373PubMed
20.
go back to reference Higgins DG, Sharp PM (1998) Clustal: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237–244CrossRef Higgins DG, Sharp PM (1998) Clustal: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237–244CrossRef
21.
go back to reference Santos N, Soares CC, Volotão EM et al (2003) Surveillance of rotavirus strains in Rio de Janeiro, Brazil, from 1997 to 1999. J Clin Microbiol 41:3399–3402PubMedCrossRef Santos N, Soares CC, Volotão EM et al (2003) Surveillance of rotavirus strains in Rio de Janeiro, Brazil, from 1997 to 1999. J Clin Microbiol 41:3399–3402PubMedCrossRef
22.
go back to reference Nielsen NM, Eugen-Olsen J, Aaby P et al (2005) Characterisation of rotavirus strains among hospitalised and non-hospitalised children in Guinea-Bissau, 2002 a high frequency of mixed infections with serotype G8. J Clin Virol 34:13–21PubMedCrossRef Nielsen NM, Eugen-Olsen J, Aaby P et al (2005) Characterisation of rotavirus strains among hospitalised and non-hospitalised children in Guinea-Bissau, 2002 a high frequency of mixed infections with serotype G8. J Clin Virol 34:13–21PubMedCrossRef
23.
go back to reference Fischer TK, Eugen-Olsen J, Pedersen AG et al (2005) Characterization of rotavirus strains in a Danish population: high frequency of mixed infections and diversity within the VP4 gene of P[8] strains. J Clin Microbiol 43:1099–1104PubMedCrossRef Fischer TK, Eugen-Olsen J, Pedersen AG et al (2005) Characterization of rotavirus strains in a Danish population: high frequency of mixed infections and diversity within the VP4 gene of P[8] strains. J Clin Microbiol 43:1099–1104PubMedCrossRef
24.
go back to reference Mascarenhas JDP, Paiva FL, Barardi CRM et al (1998) Rotavirus G and P types in children from Belém, northern Brazil, as determined by RT-PCR: occurrence of mixed P type infections. J Diarrhoeal Dis Res 16:8–14PubMed Mascarenhas JDP, Paiva FL, Barardi CRM et al (1998) Rotavirus G and P types in children from Belém, northern Brazil, as determined by RT-PCR: occurrence of mixed P type infections. J Diarrhoeal Dis Res 16:8–14PubMed
25.
go back to reference Bányai K, Gentsch JR, Glass RI et al (2004) Eight-year survey of human rotavirus strains demonstrates circulation of unusual G and P types in Hungary. J Clin Microbiol 42:393–397PubMedCrossRef Bányai K, Gentsch JR, Glass RI et al (2004) Eight-year survey of human rotavirus strains demonstrates circulation of unusual G and P types in Hungary. J Clin Microbiol 42:393–397PubMedCrossRef
26.
go back to reference Souza MBLD, Rácz ML, Leite JPG et al (2003) Molecular and serological characterization of group A rotavirus isolates obtained from hospitalized children in Goiânia, Brazil, 1998–2000. Eur J Clin Microbiol Infect Dis 22:441–443PubMedCrossRef Souza MBLD, Rácz ML, Leite JPG et al (2003) Molecular and serological characterization of group A rotavirus isolates obtained from hospitalized children in Goiânia, Brazil, 1998–2000. Eur J Clin Microbiol Infect Dis 22:441–443PubMedCrossRef
Metadata
Title
Occurrence of group A rotavirus mixed P genotypes infections in children living in Goiânia-Goiás, Brazil
Authors
E. R. L. Freitas
C. M. A. Soares
F. S. Fiaccadori
M. Souza
J. A. Parente
P. S. S. Costa
D. D. P. Cardoso
Publication date
01-11-2008
Publisher
Springer-Verlag
Published in
European Journal of Clinical Microbiology & Infectious Diseases / Issue 11/2008
Print ISSN: 0934-9723
Electronic ISSN: 1435-4373
DOI
https://doi.org/10.1007/s10096-008-0542-2

Other articles of this Issue 11/2008

European Journal of Clinical Microbiology & Infectious Diseases 11/2008 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine