Skip to main content
Top
Published in: BMC Medical Informatics and Decision Making 1/2023

Open Access 01-12-2023 | NSCLC | Research

Particle filter-based parameter estimation algorithm for prognostic risk assessment of progression in non-small cell lung cancer

Authors: Shi Shang, Junyi Yuan, Changqing Pan, Sufen Wang, Xuemin Tu, Xingxing Cen, Linhui Mi, Xumin Hou

Published in: BMC Medical Informatics and Decision Making | Issue 1/2023

Login to get access

Abstract

Non-small cell lung cancer (NSCLC) is a malignant tumor that threatens human life and health. The development of a new NSCLC risk assessment model based on electronic medical records has great potential for reducing the risk of cancer recurrence. In this process, machine learning is a powerful method for automatically extracting risk factors and indicating impact weights for NSCLC deaths. However, when the number of samples reaches a certain value, it is difficult for machine learning to improve the prediction accuracy, and it is also challenging to use the characteristic data of subsequent patients effectively. Therefore, this study aimed to build a postoperative survival risk assessment model for patients with NSCLC that updates the model parameters and improves model accuracy based on new patient data. The model perspective was a combination of particle filtering and parameter estimation. To demonstrate the feasibility and further evaluate the performance of our approach, we performed an empirical analysis experiment. The study showed that our method achieved an overall accuracy of 92% and a recall of 71% for deceased patients. Compared with traditional machine learning models, the accuracy of the model estimated by particle filter parameters has been improved by 2%, and the recall rate for dead patients has been improved by 11%. Additionally, this study outcome shows that this method can better utilize subsequent patients’ characteristic data, be more relevant to different patients, and help achieve precision medicine.
Literature
3.
go back to reference Ettinger DS, Wood DE, Aisner DL, et al. NCCN clinical practice guidelines in oncology (NCCN Guidelines®), non-small cell lung cancer, version 3.2022[EB/OL]. Ettinger DS, Wood DE, Aisner DL, et al. NCCN clinical practice guidelines in oncology (NCCN Guidelines®), non-small cell lung cancer, version 3.2022[EB/OL].
4.
go back to reference Takamori S, Toyokawa G, Ueo H, et al. Family-associated factors influence the postoperative prognosis in patients with non-small cell lung cancer. Ann Oncol. 2017;28(suppl_5):v509.CrossRef Takamori S, Toyokawa G, Ueo H, et al. Family-associated factors influence the postoperative prognosis in patients with non-small cell lung cancer. Ann Oncol. 2017;28(suppl_5):v509.CrossRef
5.
go back to reference Dziedzic DA, Rudzinski P, Langfort R, et al. Risk factors for local and distant recurrence after surgical treatment in patients with non-small-cell lung Cancer. Clinical Lung Cancer. 2016:e157–67. Dziedzic DA, Rudzinski P, Langfort R, et al. Risk factors for local and distant recurrence after surgical treatment in patients with non-small-cell lung Cancer. Clinical Lung Cancer. 2016:e157–67.
6.
go back to reference Tao H, Hayashi T, Sano F, et al. Prognostic impact of lymphovascular invasion compared with that of visceral pleural invasion in patients with pN0 non–small-cell lung cancer and a tumor diameter of 2cm orsmaller. J Surg Res. 2013;185(1):250–4.CrossRefPubMed Tao H, Hayashi T, Sano F, et al. Prognostic impact of lymphovascular invasion compared with that of visceral pleural invasion in patients with pN0 non–small-cell lung cancer and a tumor diameter of 2cm orsmaller. J Surg Res. 2013;185(1):250–4.CrossRefPubMed
7.
go back to reference Xizhao S, Wei J, Haiqing C, et al. Validation of the stage groupings in the eighth edition of the TNM classification for lung Cancer. J Thorac Oncol. 2017;1679 Xizhao S, Wei J, Haiqing C, et al. Validation of the stage groupings in the eighth edition of the TNM classification for lung Cancer. J Thorac Oncol. 2017;1679
8.
go back to reference Liu S, Liu X, Wu J, et al. Identification of candidate biomarkers correlated with the pathogenesis and prognosis of breast cancer via integrated bioinformatics analysis. Medicine. 2020;99(49):e23153.CrossRefPubMedPubMedCentral Liu S, Liu X, Wu J, et al. Identification of candidate biomarkers correlated with the pathogenesis and prognosis of breast cancer via integrated bioinformatics analysis. Medicine. 2020;99(49):e23153.CrossRefPubMedPubMedCentral
9.
go back to reference Ye Q, Shu T. EMR-based evaluation of medical care quality: status quo and trends. Chinese J Hosp Admin. 2018;34(7):560–3. Ye Q, Shu T. EMR-based evaluation of medical care quality: status quo and trends. Chinese J Hosp Admin. 2018;34(7):560–3.
10.
go back to reference Takamori S, Toyokawa G, Ueo H, et al. Family-associated factors influence the post-operative prognosis in patients with non-small cell lung cancer. Ann Oncol. 2017;28(suppl_5):v509.CrossRef Takamori S, Toyokawa G, Ueo H, et al. Family-associated factors influence the post-operative prognosis in patients with non-small cell lung cancer. Ann Oncol. 2017;28(suppl_5):v509.CrossRef
11.
go back to reference Liu C, Wong HS. Structured penalized logistic regression for gene selection in gene expression data analysis. IEEE/ACM Trans Comput Biol Bioinform. 2017:1–1. Liu C, Wong HS. Structured penalized logistic regression for gene selection in gene expression data analysis. IEEE/ACM Trans Comput Biol Bioinform. 2017:1–1.
12.
go back to reference Maulik U, Chakraborty D. Fuzzy preference based feature selection and semi-supervised SVM for Cancer classification. IEEE Trans Nanobioscience. 2014;13(2):152–60.CrossRefPubMed Maulik U, Chakraborty D. Fuzzy preference based feature selection and semi-supervised SVM for Cancer classification. IEEE Trans Nanobioscience. 2014;13(2):152–60.CrossRefPubMed
13.
go back to reference Gavves E, Tao R, Gupta DK, et al. Model decay in long-term tracking[C]//2020 25th International Conference on Pattern Recognition (ICPR). IEEE. 2021:2685–92. Gavves E, Tao R, Gupta DK, et al. Model decay in long-term tracking[C]//2020 25th International Conference on Pattern Recognition (ICPR). IEEE. 2021:2685–92.
14.
go back to reference Chen ZQ, Han M, Li MH, Wu HX, Zhang X. A review of research on data flow concept drift processing methods. Comput Sci. 2022;49(9):19. In Chinese. Chen ZQ, Han M, Li MH, Wu HX, Zhang X. A review of research on data flow concept drift processing methods. Comput Sci. 2022;49(9):19. In Chinese.
15.
go back to reference Lopes HF, Tsay RS. Particle filters and Bayesian inference in financial econometrics. J Forecast. 2011;30(1):168–209.CrossRef Lopes HF, Tsay RS. Particle filters and Bayesian inference in financial econometrics. J Forecast. 2011;30(1):168–209.CrossRef
16.
go back to reference Archibald R, Bao F, Tu X. A direct filter method for parameter estimation. J Comput Phys. 2019;398(2):108871.CrossRef Archibald R, Bao F, Tu X. A direct filter method for parameter estimation. J Comput Phys. 2019;398(2):108871.CrossRef
17.
go back to reference Creal D. A survey of sequential Monte Carlo methods for economics and finance. Econom Rev. 2012;31(1–3):245–96.CrossRef Creal D. A survey of sequential Monte Carlo methods for economics and finance. Econom Rev. 2012;31(1–3):245–96.CrossRef
18.
go back to reference Giatromanolaki A, Sivridis E, Arelaki S, et al. Expression of enzymes related to glucose metabolism in non-small cell lung cancer and prognosis. Exp Lung Res. 2017:1–8. Giatromanolaki A, Sivridis E, Arelaki S, et al. Expression of enzymes related to glucose metabolism in non-small cell lung cancer and prognosis. Exp Lung Res. 2017:1–8.
19.
go back to reference Speiser JL. A random forest method with feature selection for developing medical prediction models with clustered and longitudinal data. J Biomed Inform. 2021;117:103763.CrossRefPubMedPubMedCentral Speiser JL. A random forest method with feature selection for developing medical prediction models with clustered and longitudinal data. J Biomed Inform. 2021;117:103763.CrossRefPubMedPubMedCentral
20.
go back to reference Tang Q, Yuan J, Qunsheng MA, et al. Implementation and application of paperless filing system for medical records based on electronic signature. China Medical Devices. 2018;33(9):129–31. Tang Q, Yuan J, Qunsheng MA, et al. Implementation and application of paperless filing system for medical records based on electronic signature. China Medical Devices. 2018;33(9):129–31.
21.
go back to reference Collins GS, Reitsma JB, Altman DG, et al. Transparent reporting of a multivariable prediction model for individual prognosis or diagnosis (TRIPOD) the TRIPOD statement. Circulation. 2015;131(2):211–9.CrossRefPubMedPubMedCentral Collins GS, Reitsma JB, Altman DG, et al. Transparent reporting of a multivariable prediction model for individual prognosis or diagnosis (TRIPOD) the TRIPOD statement. Circulation. 2015;131(2):211–9.CrossRefPubMedPubMedCentral
22.
go back to reference Yuan J, Wang S, Pan C. Mechanism of impact of big data resources on medical collaborative networks from the perspective of transaction efficiency of medical services: survey study. J Med Internet Res. 2022;24(4):e32776.CrossRefPubMedPubMedCentral Yuan J, Wang S, Pan C. Mechanism of impact of big data resources on medical collaborative networks from the perspective of transaction efficiency of medical services: survey study. J Med Internet Res. 2022;24(4):e32776.CrossRefPubMedPubMedCentral
23.
go back to reference Dou P, Liu Z, Xie L, et al. The predictive value of energy spectral CT parameters for assessing Ki-67 expression of lung cancer. Transl Cancer Res. 2020;9(7):4267.CrossRefPubMedPubMedCentral Dou P, Liu Z, Xie L, et al. The predictive value of energy spectral CT parameters for assessing Ki-67 expression of lung cancer. Transl Cancer Res. 2020;9(7):4267.CrossRefPubMedPubMedCentral
24.
go back to reference Bremnes RM, Busund LT, Kilv TL, et al. The role of tumor infiltrating lymphocytes in development, progression and prognosis of non-small cell lung cancer. J Thorac Oncol. 2016:789–800. Bremnes RM, Busund LT, Kilv TL, et al. The role of tumor infiltrating lymphocytes in development, progression and prognosis of non-small cell lung cancer. J Thorac Oncol. 2016:789–800.
25.
go back to reference Ho C, Tong KM, Ramsden K, et al. Effective knowledge dissemination improves histological classification of non small cell lung cancer: reducing the rates of nsclc - not otherwise specified (nos). Ann Oncol. 2014;25(suppl_4):iv460.CrossRef Ho C, Tong KM, Ramsden K, et al. Effective knowledge dissemination improves histological classification of non small cell lung cancer: reducing the rates of nsclc - not otherwise specified (nos). Ann Oncol. 2014;25(suppl_4):iv460.CrossRef
Metadata
Title
Particle filter-based parameter estimation algorithm for prognostic risk assessment of progression in non-small cell lung cancer
Authors
Shi Shang
Junyi Yuan
Changqing Pan
Sufen Wang
Xuemin Tu
Xingxing Cen
Linhui Mi
Xumin Hou
Publication date
01-12-2023
Publisher
BioMed Central
Keywords
NSCLC
NSCLC
Published in
BMC Medical Informatics and Decision Making / Issue 1/2023
Electronic ISSN: 1472-6947
DOI
https://doi.org/10.1186/s12911-023-02373-3

Other articles of this Issue 1/2023

BMC Medical Informatics and Decision Making 1/2023 Go to the issue