Skip to main content
Top
Published in: BMC Pediatrics 1/2024

Open Access 01-12-2024 | Case Report

Novel SETBP1 D874V adjacent to the degron causes canonical schinzel–giedion syndrome: a case report and review of the literature

Authors: Jing Zheng, Meiqun Gu, Shasha Xiao, Chongzhen Li, Hongying Mi, Xiaoyan Xu

Published in: BMC Pediatrics | Issue 1/2024

Login to get access

Abstract

Schinzel-Giedion syndrome (SGS) is a severe multisystem disorder characterized by distinctive facial features, profound intellectual disability, refractory epilepsy, cortical visual impairment, hearing loss, and various congenital anomalies. SGS is attributed to gain-of-function (GoF) variants in the SETBP1 gene, with reported variants causing canonical SGS located within a 12 bp hotspot region encoding SETBP1 residues aa868-871 (degron). Here, we describe a case of typical SGS caused by a novel heterozygous missense variant, D874V, adjacent to the degron. The female patient was diagnosed in the neonatal period and presented with characteristic facial phenotype (midface retraction, prominent forehead, and low-set ears), bilateral symmetrical talipes equinovarus, overlapping toes, and severe bilateral hydronephrosis accompanied by congenital heart disease, consistent with canonical SGS. This is the first report of a typical SGS caused by a, SETBP1 non-degron missense variant. This case expands the genetic spectrum of SGS and provides new insights into genotype-phenotype correlations.
Literature
1.
go back to reference Schinzel A, Giedion A. A syndrome of severe midface retraction, multiple skull anomalies, clubfeet, and cardiac and renal malformations in sibs. Am J Med Genet. 1978;1(4):361–75.CrossRefPubMed Schinzel A, Giedion A. A syndrome of severe midface retraction, multiple skull anomalies, clubfeet, and cardiac and renal malformations in sibs. Am J Med Genet. 1978;1(4):361–75.CrossRefPubMed
2.
go back to reference Lehman AM, McFadden D, Pugash D, Sangha K, Gibson WT, Patel MS. Schinzel-Giedion syndrome: report of splenopancreatic fusion and proposed diagnostic criteria. Am J Med Genet A. 2008;146A(10):1299–306.CrossRefPubMed Lehman AM, McFadden D, Pugash D, Sangha K, Gibson WT, Patel MS. Schinzel-Giedion syndrome: report of splenopancreatic fusion and proposed diagnostic criteria. Am J Med Genet A. 2008;146A(10):1299–306.CrossRefPubMed
3.
go back to reference Liu WL, He ZX, Li F, Ai R, Ma HW. Schinzel-Giedion syndrome: a novel case, review and revised diagnostic criteria. J Genet. 2018;97(1):35–46.CrossRefPubMed Liu WL, He ZX, Li F, Ai R, Ma HW. Schinzel-Giedion syndrome: a novel case, review and revised diagnostic criteria. J Genet. 2018;97(1):35–46.CrossRefPubMed
4.
go back to reference Acuna-Hidalgo R, Deriziotis P, Steehouwer M, Gilissen C, Graham SA, van Dam S, Hoover-Fong J, Telegrafi AB, Destree A, Smigiel R, et al. Overlapping SETBP1 gain-of-function mutations in Schinzel-Giedion syndrome and hematologic malignancies. PLoS Genet. 2017;13(3):e1006683.CrossRefPubMedPubMedCentral Acuna-Hidalgo R, Deriziotis P, Steehouwer M, Gilissen C, Graham SA, van Dam S, Hoover-Fong J, Telegrafi AB, Destree A, Smigiel R, et al. Overlapping SETBP1 gain-of-function mutations in Schinzel-Giedion syndrome and hematologic malignancies. PLoS Genet. 2017;13(3):e1006683.CrossRefPubMedPubMedCentral
5.
go back to reference Richards Sue, Nazneen A, Sherri B, Soma BDD, Grody Wayne G-F, Rehm Heidi W, L., ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med, 2015; 17(5), 405 – 24. https://doi.org/10.1038/gim.2015.30. Richards Sue, Nazneen A, Sherri B, Soma BDD, Grody Wayne G-F, Rehm Heidi W, L., ACMG Laboratory Quality Assurance Committee. Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology. Genet Med, 2015; 17(5), 405 – 24. https://​doi.​org/​10.​1038/​gim.​2015.​30.
6.
go back to reference Hoischen A, van Bon BW, Gilissen C, Arts P, van Lier B, Steehouwer M, de Vries P, de Reuver R, Wieskamp N, Mortier G, et al. De novo mutations of SETBP1 cause Schinzel-Giedion syndrome. Nat Genet. 2010;42(6):483–5.CrossRefPubMed Hoischen A, van Bon BW, Gilissen C, Arts P, van Lier B, Steehouwer M, de Vries P, de Reuver R, Wieskamp N, Mortier G, et al. De novo mutations of SETBP1 cause Schinzel-Giedion syndrome. Nat Genet. 2010;42(6):483–5.CrossRefPubMed
7.
go back to reference Volk A, Conboy E, Wical B, Patterson M, Kirmani S. Whole-exome sequencing in the clinic: lessons from six consecutive cases from the Clinician’s perspective. Mol Syndromol. 2015;6(1):23–31.CrossRefPubMedPubMedCentral Volk A, Conboy E, Wical B, Patterson M, Kirmani S. Whole-exome sequencing in the clinic: lessons from six consecutive cases from the Clinician’s perspective. Mol Syndromol. 2015;6(1):23–31.CrossRefPubMedPubMedCentral
8.
go back to reference Lu T, Wang Y. [Unusual facies with delayed development and multiple malformations in a 14-month-old boy]. Zhongguo Dang Dai Er Ke Za Zhi. 2017;19(8):921–5.PubMed Lu T, Wang Y. [Unusual facies with delayed development and multiple malformations in a 14-month-old boy]. Zhongguo Dang Dai Er Ke Za Zhi. 2017;19(8):921–5.PubMed
9.
go back to reference Carvalho E, Honjo R, Magalhaes M, Yamamoto G, Rocha K, Naslavsky M, Zatz M, Passos-Bueno MR, Kim C, Bertola D. Schinzel-Giedion syndrome in two Brazilian patients: report of a novel mutation in SETBP1 and literature review of the clinical features. Am J Med Genet A. 2015;167A(5):1039–46.CrossRefPubMed Carvalho E, Honjo R, Magalhaes M, Yamamoto G, Rocha K, Naslavsky M, Zatz M, Passos-Bueno MR, Kim C, Bertola D. Schinzel-Giedion syndrome in two Brazilian patients: report of a novel mutation in SETBP1 and literature review of the clinical features. Am J Med Genet A. 2015;167A(5):1039–46.CrossRefPubMed
10.
go back to reference Yang H, Liu Z, Chen D, Lin W, Wang L, Chen T, Wang R, Yan X. Detection of a novel SETBP1 variant in a Chinese neonate with Schinzel-Giedion syndrome. Front Pediatr. 2022;10:920741.CrossRefPubMedPubMedCentral Yang H, Liu Z, Chen D, Lin W, Wang L, Chen T, Wang R, Yan X. Detection of a novel SETBP1 variant in a Chinese neonate with Schinzel-Giedion syndrome. Front Pediatr. 2022;10:920741.CrossRefPubMedPubMedCentral
11.
go back to reference Xie T, Wang Y, Fu S, Wang W, Xie C, Zhang Y, Gong F. Predictors for intravenous immunoglobulin resistance and coronary artery lesions in Kawasaki disease. Pediatr Rheumatol Online J. 2017;15(1):17.CrossRefPubMedPubMedCentral Xie T, Wang Y, Fu S, Wang W, Xie C, Zhang Y, Gong F. Predictors for intravenous immunoglobulin resistance and coronary artery lesions in Kawasaki disease. Pediatr Rheumatol Online J. 2017;15(1):17.CrossRefPubMedPubMedCentral
12.
go back to reference Leone MP, Palumbo P, Palumbo O, Di Muro E, Chetta M, Laforgia N, Resta N, Stella A, Castellana S, Mazza T, et al. The recurrent SETBP1 c.2608G > A, p.(Gly870Ser) variant in a patient with Schinzel-Giedion syndrome: an illustrative case of the utility of whole exome sequencing in a critically ill neonate. Ital J Pediatr. 2020;46(1):74.CrossRefPubMedPubMedCentral Leone MP, Palumbo P, Palumbo O, Di Muro E, Chetta M, Laforgia N, Resta N, Stella A, Castellana S, Mazza T, et al. The recurrent SETBP1 c.2608G > A, p.(Gly870Ser) variant in a patient with Schinzel-Giedion syndrome: an illustrative case of the utility of whole exome sequencing in a critically ill neonate. Ital J Pediatr. 2020;46(1):74.CrossRefPubMedPubMedCentral
13.
go back to reference Suphapeetiporn K, Srichomthong C, Shotelersuk V. SETBP1 mutations in two Thai patients with Schinzel-Giedion syndrome. Clin Genet. 2011;79(4):391–3.CrossRefPubMed Suphapeetiporn K, Srichomthong C, Shotelersuk V. SETBP1 mutations in two Thai patients with Schinzel-Giedion syndrome. Clin Genet. 2011;79(4):391–3.CrossRefPubMed
14.
go back to reference Herenger Y, Stoetzel C, Schaefer E, Scheidecker S, Maniere MC, Pelletier V, Alembik Y, Christmann D, Clavert JM, Terzic J, et al. Long term follow up of two independent patients with Schinzel-Giedion carrying SETBP1 mutations. Eur J Med Genet. 2015;58(9):479–87.CrossRefPubMed Herenger Y, Stoetzel C, Schaefer E, Scheidecker S, Maniere MC, Pelletier V, Alembik Y, Christmann D, Clavert JM, Terzic J, et al. Long term follow up of two independent patients with Schinzel-Giedion carrying SETBP1 mutations. Eur J Med Genet. 2015;58(9):479–87.CrossRefPubMed
15.
go back to reference Ko JM, Lim BC, Kim KJ, Hwang YS, Ryu HW, Lee JH, Kim JS, Chae JH. Distinct neurological features in a patient with Schinzel-Giedion syndrome caused by a recurrent SETBP1 mutation. Childs Nerv Syst. 2013;29(4):525–9.CrossRefPubMed Ko JM, Lim BC, Kim KJ, Hwang YS, Ryu HW, Lee JH, Kim JS, Chae JH. Distinct neurological features in a patient with Schinzel-Giedion syndrome caused by a recurrent SETBP1 mutation. Childs Nerv Syst. 2013;29(4):525–9.CrossRefPubMed
16.
go back to reference Kovačević G, Kravljanac R, Tadić BV, Ostojić S, Ryu SW. Schinzel-Giedion syndrome: a rare cause of psychomotor delay and refractory seizures. Global Pediatr. 2024;7:100124–100124.CrossRef Kovačević G, Kravljanac R, Tadić BV, Ostojić S, Ryu SW. Schinzel-Giedion syndrome: a rare cause of psychomotor delay and refractory seizures. Global Pediatr. 2024;7:100124–100124.CrossRef
17.
go back to reference Lopez-Gonzalez V, Domingo-Jimenez MR, Burglen L, Ballesta-Martinez MJ, Whalen S, Pinero-Fernandez JA, Guillen-Navarro E. [Schinzel-Giedion syndrome: a new mutation in SETBP1]. Pediatr (Barc). 2015;82(1):e12–16.CrossRef Lopez-Gonzalez V, Domingo-Jimenez MR, Burglen L, Ballesta-Martinez MJ, Whalen S, Pinero-Fernandez JA, Guillen-Navarro E. [Schinzel-Giedion syndrome: a new mutation in SETBP1]. Pediatr (Barc). 2015;82(1):e12–16.CrossRef
18.
go back to reference Lestner JM, Chong WK, Offiiah A, Kefas J, Vandersteen AM. Unusual neuroradiological features in Schinzel-Giedion syndrome: a novel case. Clin Dysmorphol. 2012;21(3):152–4.CrossRefPubMed Lestner JM, Chong WK, Offiiah A, Kefas J, Vandersteen AM. Unusual neuroradiological features in Schinzel-Giedion syndrome: a novel case. Clin Dysmorphol. 2012;21(3):152–4.CrossRefPubMed
19.
go back to reference Miyake F, Kuroda Y, Naruto T, Ohashi I, Takano K, Kurosawa K. West syndrome in a patient with Schinzel-Giedion syndrome. J Child Neurol. 2015;30(7):932–6.CrossRefPubMed Miyake F, Kuroda Y, Naruto T, Ohashi I, Takano K, Kurosawa K. West syndrome in a patient with Schinzel-Giedion syndrome. J Child Neurol. 2015;30(7):932–6.CrossRefPubMed
20.
go back to reference Abacan MAR, Salonga-Quimpo RAM. A Filipino child with Schinzel-Giedion Syndrome. Acta Med Philippina 2023, 57(4). Abacan MAR, Salonga-Quimpo RAM. A Filipino child with Schinzel-Giedion Syndrome. Acta Med Philippina 2023, 57(4).
21.
go back to reference Sullivan JA, Stong N, Baugh EH, McDonald MT, Takeuchi A, Shashi V. A pathogenic variant in the SETBP1 hotspot results in a forme-fruste Schinzel-Giedion syndrome. Am J Med Genet A. 2020;182(8):1947–51.CrossRefPubMed Sullivan JA, Stong N, Baugh EH, McDonald MT, Takeuchi A, Shashi V. A pathogenic variant in the SETBP1 hotspot results in a forme-fruste Schinzel-Giedion syndrome. Am J Med Genet A. 2020;182(8):1947–51.CrossRefPubMed
22.
go back to reference Takeuchi A, Okamoto N, Fujinaga S, Morita H, Shimizu J, Akiyama T, Ninomiya S, Takanashi J, Kubo T. Progressive brain atrophy in Schinzel-Giedion syndrome with a SETBP1 mutation. Eur J Med Genet. 2015;58(8):369–71.CrossRefPubMed Takeuchi A, Okamoto N, Fujinaga S, Morita H, Shimizu J, Akiyama T, Ninomiya S, Takanashi J, Kubo T. Progressive brain atrophy in Schinzel-Giedion syndrome with a SETBP1 mutation. Eur J Med Genet. 2015;58(8):369–71.CrossRefPubMed
23.
go back to reference Leonardi E, Bettella E, Pelizza MF, Aspromonte MC, Polli R, Boniver C, Sartori S, Milani D, Murgia A. Identification of SETBP1 mutations by Gene Panel Sequencing in individuals with intellectual disability or with Developmental and Epileptic Encephalopathy. Front Neurol. 2020;11:593446.CrossRefPubMedPubMedCentral Leonardi E, Bettella E, Pelizza MF, Aspromonte MC, Polli R, Boniver C, Sartori S, Milani D, Murgia A. Identification of SETBP1 mutations by Gene Panel Sequencing in individuals with intellectual disability or with Developmental and Epileptic Encephalopathy. Front Neurol. 2020;11:593446.CrossRefPubMedPubMedCentral
24.
go back to reference Piazza R, Valletta S, Winkelmann N, Redaelli S, Spinelli R, Pirola A, Antolini L, Mologni L, Donadoni C, Papaemmanuil E, et al. Recurrent SETBP1 mutations in atypical chronic myeloid leukemia. Nat Genet. 2013;45(1):18–24.CrossRefPubMed Piazza R, Valletta S, Winkelmann N, Redaelli S, Spinelli R, Pirola A, Antolini L, Mologni L, Donadoni C, Papaemmanuil E, et al. Recurrent SETBP1 mutations in atypical chronic myeloid leukemia. Nat Genet. 2013;45(1):18–24.CrossRefPubMed
25.
go back to reference Piazza R, Magistroni V, Redaelli S, Mauri M, Massimino L, Sessa A, Peronaci M, Lalowski M, Soliymani R, Mezzatesta C, et al. SETBP1 induces transcription of a network of development genes by acting as an epigenetic hub. Nat Commun. 2018;9(1):2192.CrossRefPubMedPubMedCentral Piazza R, Magistroni V, Redaelli S, Mauri M, Massimino L, Sessa A, Peronaci M, Lalowski M, Soliymani R, Mezzatesta C, et al. SETBP1 induces transcription of a network of development genes by acting as an epigenetic hub. Nat Commun. 2018;9(1):2192.CrossRefPubMedPubMedCentral
26.
go back to reference Banfi F, Rubio A, Zaghi M, Massimino L, Fagnocchi G, Bellini E, Luoni M, Cancellieri C, Bagliani A, Di Resta C, et al. SETBP1 accumulation induces P53 inhibition and genotoxic stress in neural progenitors underlying neurodegeneration in Schinzel-Giedion syndrome. Nat Commun. 2021;12(1):4050.CrossRefPubMedPubMedCentral Banfi F, Rubio A, Zaghi M, Massimino L, Fagnocchi G, Bellini E, Luoni M, Cancellieri C, Bagliani A, Di Resta C, et al. SETBP1 accumulation induces P53 inhibition and genotoxic stress in neural progenitors underlying neurodegeneration in Schinzel-Giedion syndrome. Nat Commun. 2021;12(1):4050.CrossRefPubMedPubMedCentral
27.
go back to reference Wong MM, Kampen RA, Braden RO, Alagöz G, Hildebrand MS, Barnett C, Barnett M, Brusco A, Carli D, Vries, BBd et al. SETBP1 variants outside the degron disrupt DNA-binding and transcription independent of protein abundance to cause a heterogeneous neurodevelopmental disorder. medRxiv 2022:2022.2003.2004.22271462. Wong MM, Kampen RA, Braden RO, Alagöz G, Hildebrand MS, Barnett C, Barnett M, Brusco A, Carli D, Vries, BBd et al. SETBP1 variants outside the degron disrupt DNA-binding and transcription independent of protein abundance to cause a heterogeneous neurodevelopmental disorder. medRxiv 2022:2022.2003.2004.22271462.
Metadata
Title
Novel SETBP1 D874V adjacent to the degron causes canonical schinzel–giedion syndrome: a case report and review of the literature
Authors
Jing Zheng
Meiqun Gu
Shasha Xiao
Chongzhen Li
Hongying Mi
Xiaoyan Xu
Publication date
01-12-2024
Publisher
BioMed Central
Published in
BMC Pediatrics / Issue 1/2024
Electronic ISSN: 1471-2431
DOI
https://doi.org/10.1186/s12887-024-04779-y

Other articles of this Issue 1/2024

BMC Pediatrics 1/2024 Go to the issue