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Published in: Molecular Cancer 1/2004

Open Access 01-12-2004 | Research

Mutation in mitochondrial complex I ND6 subunit is associated with defective response to hypoxia in human glioma cells

Authors: Carrie DeHaan, Bahram Habibi-Nazhad, Elizabeth Yan, Nicole Salloum, Matthew Parliament, Joan Allalunis-Turner

Published in: Molecular Cancer | Issue 1/2004

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Abstract

Background

Hypoxia-tolerant human glioma cells reduce oxygen consumption rate in response to oxygen deficit, a defense mechanism that contributes to survival under moderately hypoxic conditions. In contrast, hypoxia-sensitive cells lack this ability. As it has been previously shown that hypoxia-tolerant (M006x, M006xLo, M059K) and -sensitive (M010b) glioma cells express differences in mitochondrial function, we investigated whether mitochondrial DNA-encoded mutations are associated with differences in the initial response to oxygen deficit.

Results

The mitochondrial genome was sequenced and 23 mtDNA alterations were identified, one of which was an unreported mutation (T-C transition in base pair 14634) in the hypoxia-sensitive cell line, M010b, that resulted in a single amino acid change in the gene encoding the ND6 subunit of NADH:ubiquinone oxidoreductase (Complex I). The T14634C mutation did not abrogate ND6 protein expression, however, M010b cells were more resistant to rotenone, an agent used to screen for Complex I mutations, and adriamycin, an agent activated by redox cycling. The specific function of mtDNA-encoded, membrane-embedded Complex I ND subunits is not known at present. Current models suggest that the transmembrane arm of Complex I may serve as a conformationally driven proton channel. As cellular respiration is regulated, in part, by proton flux, we used homology-based modeling and computational molecular biology to predict the 3D structure of the wild type and mutated ND6 proteins. These models predict that the T14634C mutation alters the structure and orientation of the trans-membrane helices of the ND6 protein.

Conclusion

Complex I ND subunits are mutational hot spots in tumor mtDNA. Genetic changes that alter Complex I structure and function may alter a cell's ability to respond to oxygen deficit and consolidate hypoxia rescue mechanisms, and may contribute to resistance to chemotherapeutic agents that require redox cycling for activation.
Appendix
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Literature
1.
go back to reference Dachs GU, Chaplin DJ: Microenvironmental control of gene expression: implications for tumor angiogenesis, progression, and metastasis. Semin Radiat Oncol. 1998, 8: 208-216.CrossRefPubMed Dachs GU, Chaplin DJ: Microenvironmental control of gene expression: implications for tumor angiogenesis, progression, and metastasis. Semin Radiat Oncol. 1998, 8: 208-216.CrossRefPubMed
2.
go back to reference Fyles A, Milosevic M, Hedley D, Pintilie M, Levin W, Manchul L, Hill RP: Tumor hypoxia has independent predictor impact only in patients with node-negative cervix cancer. J Clin Oncol. 2002, 20: 680-687.CrossRefPubMed Fyles A, Milosevic M, Hedley D, Pintilie M, Levin W, Manchul L, Hill RP: Tumor hypoxia has independent predictor impact only in patients with node-negative cervix cancer. J Clin Oncol. 2002, 20: 680-687.CrossRefPubMed
3.
go back to reference Nordsmark M, Overgaard J: A confirmatory prognostic study on oxygenation status and loco-regional control in advanced head and neck squamous cell carcinoma treated by radiation therapy. Radiother Oncol. 2000, 57: 39-43.CrossRefPubMed Nordsmark M, Overgaard J: A confirmatory prognostic study on oxygenation status and loco-regional control in advanced head and neck squamous cell carcinoma treated by radiation therapy. Radiother Oncol. 2000, 57: 39-43.CrossRefPubMed
4.
go back to reference Hochachka PW, Buck LT, Doll CJ, Land SC: Unifying theory of hypoxia tolerance: molecular/metabolic defense and rescue mechanisms for surviving oxygen lack. Proc Natl Acad Sci U S A. 1996, 93: 9493-9498.PubMedCentralCrossRefPubMed Hochachka PW, Buck LT, Doll CJ, Land SC: Unifying theory of hypoxia tolerance: molecular/metabolic defense and rescue mechanisms for surviving oxygen lack. Proc Natl Acad Sci U S A. 1996, 93: 9493-9498.PubMedCentralCrossRefPubMed
5.
go back to reference Semenza GL: HIF-1, O(2), and the 3 PHDs: how animal cells signal hypoxia to the nucleus. Cell. 2001, 107: 1-3.CrossRefPubMed Semenza GL: HIF-1, O(2), and the 3 PHDs: how animal cells signal hypoxia to the nucleus. Cell. 2001, 107: 1-3.CrossRefPubMed
6.
go back to reference Wilden J, Moore I: Histological factors in the prognosis of malignant glioma. Brain Oncology: Biology, Diagnosis and Therapy. 1987, 243-247. Dordrecht, Martinus NijhoffCrossRef Wilden J, Moore I: Histological factors in the prognosis of malignant glioma. Brain Oncology: Biology, Diagnosis and Therapy. 1987, 243-247. Dordrecht, Martinus NijhoffCrossRef
7.
go back to reference Allalunis-Turner MJ, Franko AJ, Parliament MB: Modulation of oxygen consumption rate and vascular endothelial growth factor mRNA expression in human malignant glioma cells by hypoxia. Br J Cancer. 1999, 80: 104-109.PubMedCentralCrossRefPubMed Allalunis-Turner MJ, Franko AJ, Parliament MB: Modulation of oxygen consumption rate and vascular endothelial growth factor mRNA expression in human malignant glioma cells by hypoxia. Br J Cancer. 1999, 80: 104-109.PubMedCentralCrossRefPubMed
8.
go back to reference Turcotte ML, Parliament M, Franko A, Allalunis-Turner J: Variation in mitochondrial function in hypoxia-sensitive and hypoxia- tolerant human glioma cells. Br J Cancer. 2002, 86: 619-624.PubMedCentralCrossRefPubMed Turcotte ML, Parliament M, Franko A, Allalunis-Turner J: Variation in mitochondrial function in hypoxia-sensitive and hypoxia- tolerant human glioma cells. Br J Cancer. 2002, 86: 619-624.PubMedCentralCrossRefPubMed
11.
go back to reference Kirches E, Krause G, Warich-Kirches M, Weis S, Schneider T, Meyer-Puttlitz B, Mawrin C, Dietzmann K: High frequency of mitochondrial DNA mutations in glioblastoma multiforme identified by direct sequence comparison to blood samples. Int J Cancer. 2001, 93: 534-538.CrossRefPubMed Kirches E, Krause G, Warich-Kirches M, Weis S, Schneider T, Meyer-Puttlitz B, Mawrin C, Dietzmann K: High frequency of mitochondrial DNA mutations in glioblastoma multiforme identified by direct sequence comparison to blood samples. Int J Cancer. 2001, 93: 534-538.CrossRefPubMed
12.
go back to reference van den Heuvel L, Smeitink J: The oxidative phosphorylation (OXPHOS) system: nuclear genes and human genetic diseases. Bioessays. 2001, 23: 518-525.CrossRefPubMed van den Heuvel L, Smeitink J: The oxidative phosphorylation (OXPHOS) system: nuclear genes and human genetic diseases. Bioessays. 2001, 23: 518-525.CrossRefPubMed
14.
go back to reference Chomyn A: Mitochondrial genetic control of assembly and function of complex I in mammalian cells. J Bioenerg Biomembr. 2001, 33: 251-257.CrossRefPubMed Chomyn A: Mitochondrial genetic control of assembly and function of complex I in mammalian cells. J Bioenerg Biomembr. 2001, 33: 251-257.CrossRefPubMed
15.
go back to reference Fliss MS, Usadel H, Caballero OL, Wu L, Buta MR, Eleff SM, Jen J, Sidransky D: Facile detection of mitochondrial DNA mutations in tumors and bodily fluids. Science. 2000, 287: 2017-2019.CrossRefPubMed Fliss MS, Usadel H, Caballero OL, Wu L, Buta MR, Eleff SM, Jen J, Sidransky D: Facile detection of mitochondrial DNA mutations in tumors and bodily fluids. Science. 2000, 287: 2017-2019.CrossRefPubMed
16.
go back to reference Polyak K, Li Y, Zhu H, Lengauer C, Willson JK, Markowitz SD, Trush MA, Kinzler KW, Vogelstein B: Somatic mutations of the mitochondrial genome in human colorectal tumours. Nat Genet. 1998, 20: 291-293.CrossRefPubMed Polyak K, Li Y, Zhu H, Lengauer C, Willson JK, Markowitz SD, Trush MA, Kinzler KW, Vogelstein B: Somatic mutations of the mitochondrial genome in human colorectal tumours. Nat Genet. 1998, 20: 291-293.CrossRefPubMed
17.
go back to reference Parrella P, Xiao Y, Fliss M, Sanchez-Cespedes M, Mazzarelli P, Rinaldi M, Nicol T, Gabrielson E, Cuomo C, Cohen D, Pandit S, Spencer M, Rabitti C, Fazio VM, Sidransky D: Detection of mitochondrial DNA mutations in primary breast cancer and fine-needle aspirates. Cancer Res. 2001, 61: 7623-7626.PubMed Parrella P, Xiao Y, Fliss M, Sanchez-Cespedes M, Mazzarelli P, Rinaldi M, Nicol T, Gabrielson E, Cuomo C, Cohen D, Pandit S, Spencer M, Rabitti C, Fazio VM, Sidransky D: Detection of mitochondrial DNA mutations in primary breast cancer and fine-needle aspirates. Cancer Res. 2001, 61: 7623-7626.PubMed
18.
go back to reference Sanchez-Cespedes M, Parrella P, Nomoto S, Cohen D, Xiao Y, Esteller M, Jeronimo C, Jordan RC, Nicol T, Koch WM, Schoenberg M, Mazzarelli P, Fazio VM, Sidransky D: Identification of a mononucleotide repeat as a major target for mitochondrial DNA alterations in human tumors. Cancer Res. 2001, 61: 7015-7019.PubMed Sanchez-Cespedes M, Parrella P, Nomoto S, Cohen D, Xiao Y, Esteller M, Jeronimo C, Jordan RC, Nicol T, Koch WM, Schoenberg M, Mazzarelli P, Fazio VM, Sidransky D: Identification of a mononucleotide repeat as a major target for mitochondrial DNA alterations in human tumors. Cancer Res. 2001, 61: 7015-7019.PubMed
19.
go back to reference Yeh JJ, Lunetta KL, van Orsouw NJ, Moore F. D. = Jr, Mutter GL, Vijg J, Dahia PL, Eng C: Somatic mitochondrial DNA (mtDNA) mutations in papillary thyroid carcinomas and differential mtDNA sequence variants in cases with thyroid tumours. Oncogene. 2000, 19: 2060-2066.CrossRefPubMed Yeh JJ, Lunetta KL, van Orsouw NJ, Moore F. D. = Jr, Mutter GL, Vijg J, Dahia PL, Eng C: Somatic mitochondrial DNA (mtDNA) mutations in papillary thyroid carcinomas and differential mtDNA sequence variants in cases with thyroid tumours. Oncogene. 2000, 19: 2060-2066.CrossRefPubMed
21.
go back to reference Bai Y, Attardi G: The mtDNA-encoded ND6 subunit of mitochondrial NADH dehydrogenase is essential for the assembly of the membrane arm and the respiratory function of the enzyme. EMBO J. 1998, 17: 4848-4858.PubMedCentralCrossRefPubMed Bai Y, Attardi G: The mtDNA-encoded ND6 subunit of mitochondrial NADH dehydrogenase is essential for the assembly of the membrane arm and the respiratory function of the enzyme. EMBO J. 1998, 17: 4848-4858.PubMedCentralCrossRefPubMed
22.
go back to reference Davies KJ, Doroshow JH: Redox cycling of anthracyclines by cardiac mitochondria. I. Anthracycline radical formation by NADH dehydrogenase. J Biol Chem. 1986, 261: 3060-3067.PubMed Davies KJ, Doroshow JH: Redox cycling of anthracyclines by cardiac mitochondria. I. Anthracycline radical formation by NADH dehydrogenase. J Biol Chem. 1986, 261: 3060-3067.PubMed
24.
go back to reference Miller FJ, Rosenfeldt FL, Zhang C, Linnane AW, Nagley P: Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age. Nucleic Acids Res. 2003, 31: e61-PubMedCentralCrossRefPubMed Miller FJ, Rosenfeldt FL, Zhang C, Linnane AW, Nagley P: Precise determination of mitochondrial DNA copy number in human skeletal and cardiac muscle by a PCR-based assay: lack of change of copy number with age. Nucleic Acids Res. 2003, 31: e61-PubMedCentralCrossRefPubMed
25.
go back to reference Chomyn A: In vivo labeling and analysis of human mitochondrial translation products. Methods Enzymol. 1996, 264: 197-211.CrossRefPubMed Chomyn A: In vivo labeling and analysis of human mitochondrial translation products. Methods Enzymol. 1996, 264: 197-211.CrossRefPubMed
26.
go back to reference Setterfield K, WIlliams AJ, Donald J, Thorburn DR, Kirby DM, Trounce IA, Chriostodolou J: Flow cytometry in the study of mitochodrial respiratory chain disorders. Mitochondrion. 2002, 1: 437-445. 10.1016/S1567-7249(02)00008-9.CrossRefPubMed Setterfield K, WIlliams AJ, Donald J, Thorburn DR, Kirby DM, Trounce IA, Chriostodolou J: Flow cytometry in the study of mitochodrial respiratory chain disorders. Mitochondrion. 2002, 1: 437-445. 10.1016/S1567-7249(02)00008-9.CrossRefPubMed
27.
go back to reference Robinson BH: Use of fibroblast and lymphoblast cultures for detection of respiratory chain defects. Methods Enzymol. 1996, 264: 454-464.CrossRefPubMed Robinson BH: Use of fibroblast and lymphoblast cultures for detection of respiratory chain defects. Methods Enzymol. 1996, 264: 454-464.CrossRefPubMed
28.
go back to reference Zhang JG, Fariss MW: Thenoyltrifluoroacetone, a potent inhibitor of carboxylesterase activity. Biochem Pharmacol. 2002, 63: 751-754.CrossRefPubMed Zhang JG, Fariss MW: Thenoyltrifluoroacetone, a potent inhibitor of carboxylesterase activity. Biochem Pharmacol. 2002, 63: 751-754.CrossRefPubMed
29.
go back to reference Chinnery PF, Brown DT, Andrews RM, Singh-Kler R, Riordan-Eva P, Lindley J, Applegarth DA, Turnbull DM, Howell N: The mitochondrial ND6 gene is a hot spot for mutations that cause Leber's hereditary optic neuropathy. Brain. 2001, 124: 209-218.CrossRefPubMed Chinnery PF, Brown DT, Andrews RM, Singh-Kler R, Riordan-Eva P, Lindley J, Applegarth DA, Turnbull DM, Howell N: The mitochondrial ND6 gene is a hot spot for mutations that cause Leber's hereditary optic neuropathy. Brain. 2001, 124: 209-218.CrossRefPubMed
30.
go back to reference Robinson BH: Human complex I deficiency: clinical spectrum and involvement of oxygen free radicals in the pathogenicity of the defect. Biochim Biophys Acta. 1998, 1364: 271-286.CrossRefPubMed Robinson BH: Human complex I deficiency: clinical spectrum and involvement of oxygen free radicals in the pathogenicity of the defect. Biochim Biophys Acta. 1998, 1364: 271-286.CrossRefPubMed
31.
go back to reference Hofhaus G, Weiss H, Leonard K: Electron microscopic analysis of the peripheral and membrane parts of mitochondrial NADH dehydrogenase (complex I). J Mol Biol. 1991, 221: 1027-1043.CrossRefPubMed Hofhaus G, Weiss H, Leonard K: Electron microscopic analysis of the peripheral and membrane parts of mitochondrial NADH dehydrogenase (complex I). J Mol Biol. 1991, 221: 1027-1043.CrossRefPubMed
32.
go back to reference Cardol P, Matagne RF, Remacle C: Impact of mutations affecting ND mitochondria-encoded subunits on the activity and assembly of complex I in Chlamydomonas. Implication for the structural organization of the enzyme. J Mol Biol. 2002, 319: 1211-1221.CrossRefPubMed Cardol P, Matagne RF, Remacle C: Impact of mutations affecting ND mitochondria-encoded subunits on the activity and assembly of complex I in Chlamydomonas. Implication for the structural organization of the enzyme. J Mol Biol. 2002, 319: 1211-1221.CrossRefPubMed
33.
go back to reference Carelli V, Ghelli A, Bucchi L, Montagna P, De Negri A, Leuzzi V, Carducci C, Lenaz G, Lugaresi E, Degli Esposti M: Biochemical features of mtDNA 14484 (ND6/M64V) point mutation associated with Leber's hereditary optic neuropathy. Ann Neurol. 1999, 45: 320-328.CrossRefPubMed Carelli V, Ghelli A, Bucchi L, Montagna P, De Negri A, Leuzzi V, Carducci C, Lenaz G, Lugaresi E, Degli Esposti M: Biochemical features of mtDNA 14484 (ND6/M64V) point mutation associated with Leber's hereditary optic neuropathy. Ann Neurol. 1999, 45: 320-328.CrossRefPubMed
34.
go back to reference Jun AS, Trounce IA, Brown MD, Shoffner JM, Wallace DC: Use of transmitochondrial cybrids to assign a complex I defect to the mitochondrial DNA-encoded NADH dehydrogenase subunit 6 gene mutation at nucleotide pair 14459 that causes Leber hereditary optic neuropathy and dystonia. Mol Cell Biol. 1996, 16: 771-777.PubMedCentralPubMed Jun AS, Trounce IA, Brown MD, Shoffner JM, Wallace DC: Use of transmitochondrial cybrids to assign a complex I defect to the mitochondrial DNA-encoded NADH dehydrogenase subunit 6 gene mutation at nucleotide pair 14459 that causes Leber hereditary optic neuropathy and dystonia. Mol Cell Biol. 1996, 16: 771-777.PubMedCentralPubMed
35.
go back to reference Bai Y, Hu P, Park JS, Deng JH, Song X, Chomyn A, Yagi T, Attardi G: Genetic and functional analysis of mitochondrial DNA-encoded complex I genes. Ann N Y Acad Sci. 2004, 1011: 272-283.CrossRefPubMed Bai Y, Hu P, Park JS, Deng JH, Song X, Chomyn A, Yagi T, Attardi G: Genetic and functional analysis of mitochondrial DNA-encoded complex I genes. Ann N Y Acad Sci. 2004, 1011: 272-283.CrossRefPubMed
36.
go back to reference Singh KK, Russell J, Sigala B, Zhang Y, Williams J, Keshav KF: Mitochondrial DNA determines the cellular response to cancer therapeutic agents. Oncogene. 1999, 18: 6641-6646.CrossRefPubMed Singh KK, Russell J, Sigala B, Zhang Y, Williams J, Keshav KF: Mitochondrial DNA determines the cellular response to cancer therapeutic agents. Oncogene. 1999, 18: 6641-6646.CrossRefPubMed
37.
go back to reference Ozols RF, Willson JK, Weltz MD, Grotzinger KR, Myers CE, Young RC: Inhibition of human ovarian cancer colony formation by adriamycin and its major metabolites. Cancer Res. 1980, 40: 4109-4112.PubMed Ozols RF, Willson JK, Weltz MD, Grotzinger KR, Myers CE, Young RC: Inhibition of human ovarian cancer colony formation by adriamycin and its major metabolites. Cancer Res. 1980, 40: 4109-4112.PubMed
38.
go back to reference Barrientos A, Moraes CT: Simultaneous transfer of mitochondrial DNA and single chromosomes in somatic cells: a novel approach for the study of defects in nuclear-mitochondrial communication. Hum Mol Genet. 1998, 7: 1801-1808.CrossRefPubMed Barrientos A, Moraes CT: Simultaneous transfer of mitochondrial DNA and single chromosomes in somatic cells: a novel approach for the study of defects in nuclear-mitochondrial communication. Hum Mol Genet. 1998, 7: 1801-1808.CrossRefPubMed
39.
go back to reference Friedrich T: Complex I: a chimaera of a redox and conformation-driven proton pump?. J Bioenerg Biomembr. 2001, 33: 169-177.CrossRefPubMed Friedrich T: Complex I: a chimaera of a redox and conformation-driven proton pump?. J Bioenerg Biomembr. 2001, 33: 169-177.CrossRefPubMed
40.
go back to reference Ludwig B, Bender E, Arnold S, Huttemann M, Lee I, Kadenbach B: Cytochrome C oxidase and the regulation of oxidative phosphorylation. Chembiochem. 2001, 2: 392-403.CrossRefPubMed Ludwig B, Bender E, Arnold S, Huttemann M, Lee I, Kadenbach B: Cytochrome C oxidase and the regulation of oxidative phosphorylation. Chembiochem. 2001, 2: 392-403.CrossRefPubMed
41.
go back to reference Ainscow EK, Brand MD: Top-down control analysis of ATP turnover, glycolysis and oxidative phosphorylation in rat hepatocytes. Eur J Biochem. 1999, 263: 671-685.CrossRefPubMed Ainscow EK, Brand MD: Top-down control analysis of ATP turnover, glycolysis and oxidative phosphorylation in rat hepatocytes. Eur J Biochem. 1999, 263: 671-685.CrossRefPubMed
42.
go back to reference Casey TM, Pakay JL, Guppy M, Arthur PG: Hypoxia causes downregulation of protein and RNA synthesis in noncontracting Mammalian cardiomyocytes. Circ Res. 2002, 90: 777-783.CrossRefPubMed Casey TM, Pakay JL, Guppy M, Arthur PG: Hypoxia causes downregulation of protein and RNA synthesis in noncontracting Mammalian cardiomyocytes. Circ Res. 2002, 90: 777-783.CrossRefPubMed
43.
go back to reference Wenger RH: Cellular adaptation to hypoxia: O2-sensing protein hydroxylases, hypoxia-inducible transcription factors, and O2-regulated gene expression. FASEB J. 2002, 16: 1151-1162.CrossRefPubMed Wenger RH: Cellular adaptation to hypoxia: O2-sensing protein hydroxylases, hypoxia-inducible transcription factors, and O2-regulated gene expression. FASEB J. 2002, 16: 1151-1162.CrossRefPubMed
44.
go back to reference Page EL, Robitaille GA, Pouyssegur J, Richard DE: Induction of hypoxia-inducible factor-1alpha by transcriptional and translational mechanisms. J Biol Chem. 2002, 277: 48403-48409.CrossRefPubMed Page EL, Robitaille GA, Pouyssegur J, Richard DE: Induction of hypoxia-inducible factor-1alpha by transcriptional and translational mechanisms. J Biol Chem. 2002, 277: 48403-48409.CrossRefPubMed
45.
go back to reference Richard DE, Berra E, Pouyssegur J: Nonhypoxic pathway mediates the induction of hypoxia-inducible factor 1alpha in vascular smooth muscle cells. J Biol Chem. 2000, 275: 26765-26771.PubMed Richard DE, Berra E, Pouyssegur J: Nonhypoxic pathway mediates the induction of hypoxia-inducible factor 1alpha in vascular smooth muscle cells. J Biol Chem. 2000, 275: 26765-26771.PubMed
46.
go back to reference Gao N, Ding M, Zheng JZ, Zhang Z, Leonard SS, Liu KJ, Shi X, Jiang BH: Vanadate-induced expression of hypoxia-inducible factor 1 alpha and vascular endothelial growth factor through phosphatidylinositol 3-kinase/Akt pathway and reactive oxygen species. J Biol Chem. 2002, 277: 31963-31971.CrossRefPubMed Gao N, Ding M, Zheng JZ, Zhang Z, Leonard SS, Liu KJ, Shi X, Jiang BH: Vanadate-induced expression of hypoxia-inducible factor 1 alpha and vascular endothelial growth factor through phosphatidylinositol 3-kinase/Akt pathway and reactive oxygen species. J Biol Chem. 2002, 277: 31963-31971.CrossRefPubMed
47.
go back to reference Salnikow K, Su W, Blagosklonny MV, Costa M: Carcinogenic metals induce hypoxia-inducible factor-stimulated transcription by reactive oxygen species-independent mechanism. Cancer Res. 2000, 60: 3375-3378.PubMed Salnikow K, Su W, Blagosklonny MV, Costa M: Carcinogenic metals induce hypoxia-inducible factor-stimulated transcription by reactive oxygen species-independent mechanism. Cancer Res. 2000, 60: 3375-3378.PubMed
48.
go back to reference Grossman LI, Shoubridge EA: Mitochondrial genetics and human disease. Bioessays. 1996, 18: 983-991.CrossRefPubMed Grossman LI, Shoubridge EA: Mitochondrial genetics and human disease. Bioessays. 1996, 18: 983-991.CrossRefPubMed
49.
go back to reference Valentino ML, Avoni P, Barboni P, Pallotti F, Rengo C, Torroni A, Bellan M, Baruzzi A, Carelli V: Mitochondrial DNA nucleotide changes C14482G and C14482A in the ND6 gene are pathogenic for Leber's hereditary optic neuropathy. Ann Neurol. 2002, 51: 774-778.CrossRefPubMed Valentino ML, Avoni P, Barboni P, Pallotti F, Rengo C, Torroni A, Bellan M, Baruzzi A, Carelli V: Mitochondrial DNA nucleotide changes C14482G and C14482A in the ND6 gene are pathogenic for Leber's hereditary optic neuropathy. Ann Neurol. 2002, 51: 774-778.CrossRefPubMed
50.
go back to reference Allalunis-Turner MJ, Barron GM, Day R. S. = 3d, Dobler K, Urtasun RC: Heterogeneity in response to treatment with buthionine sulfoximine or interferon in human malignant glioma cells. International Journal of Radiation Oncology, Biology, Physics. 1992, 22: 765-768.CrossRefPubMed Allalunis-Turner MJ, Barron GM, Day R. S. = 3d, Dobler K, Urtasun RC: Heterogeneity in response to treatment with buthionine sulfoximine or interferon in human malignant glioma cells. International Journal of Radiation Oncology, Biology, Physics. 1992, 22: 765-768.CrossRefPubMed
51.
go back to reference Parliament MB, Franko AJ, Allalunis-Turner MJ, Mielke BW, Santos CL, Wolokoff BG, Mercer JR: Anomalous patterns of nitroimidazole binding adjacent to necrosis in human glioma xenografts: possible role of decreased oxygen consumption. British Journal of Cancer. 1997, 75: 311-318.PubMedCentralCrossRefPubMed Parliament MB, Franko AJ, Allalunis-Turner MJ, Mielke BW, Santos CL, Wolokoff BG, Mercer JR: Anomalous patterns of nitroimidazole binding adjacent to necrosis in human glioma xenografts: possible role of decreased oxygen consumption. British Journal of Cancer. 1997, 75: 311-318.PubMedCentralCrossRefPubMed
52.
go back to reference Taylor RW, Taylor GA, Durham SE, Turnbull DM: The determination of complete human mitochondrial DNA sequences in single cells: implications for the study of somatic mitochondrial DNA point mutations. Nucleic Acids Res. 2001, 29: E74-4.PubMedCentralCrossRefPubMed Taylor RW, Taylor GA, Durham SE, Turnbull DM: The determination of complete human mitochondrial DNA sequences in single cells: implications for the study of somatic mitochondrial DNA point mutations. Nucleic Acids Res. 2001, 29: E74-4.PubMedCentralCrossRefPubMed
53.
go back to reference Horikoshi T, Danenberg KD, Stadlbauer TH, Volkenandt M, Shea LC, Aigner K, Gustavsson B, Leichman L, Frosing R, Ray M, : Quantitation of thymidylate synthase, dihydrofolate reductase, and DT-diaphorase gene expression in human tumors using the polymerase chain reaction. Cancer Res. 1992, 52: 108-116.PubMed Horikoshi T, Danenberg KD, Stadlbauer TH, Volkenandt M, Shea LC, Aigner K, Gustavsson B, Leichman L, Frosing R, Ray M, : Quantitation of thymidylate synthase, dihydrofolate reductase, and DT-diaphorase gene expression in human tumors using the polymerase chain reaction. Cancer Res. 1992, 52: 108-116.PubMed
54.
55.
go back to reference Catania A, Urban S, Yan E, Hao C, Barron G, Allalunis-Turner J: Expression and localization of cyclin-dependent kinase 5 in apoptotic human glioma cells. Neuro-oncol. 2001, 3: 89-98.PubMedCentralPubMed Catania A, Urban S, Yan E, Hao C, Barron G, Allalunis-Turner J: Expression and localization of cyclin-dependent kinase 5 in apoptotic human glioma cells. Neuro-oncol. 2001, 3: 89-98.PubMedCentralPubMed
56.
go back to reference Koch CJ, Howell RL, Biaglow JE: Ascorbate anion potentiates cytotoxicity of nitro-aromatic compounds under hypoxic and anoxic conditions. Br J Cancer. 1979, 39: 321-329.PubMedCentralCrossRefPubMed Koch CJ, Howell RL, Biaglow JE: Ascorbate anion potentiates cytotoxicity of nitro-aromatic compounds under hypoxic and anoxic conditions. Br J Cancer. 1979, 39: 321-329.PubMedCentralCrossRefPubMed
57.
go back to reference Schobert B, Cupp-Vickery J, Hornak V, Smith S, Lanyi J: Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal. J Mol Biol. 2002, 321: 715-726.CrossRefPubMed Schobert B, Cupp-Vickery J, Hornak V, Smith S, Lanyi J: Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal. J Mol Biol. 2002, 321: 715-726.CrossRefPubMed
58.
go back to reference Juretic D, Jkeroncic A, Zucic D: Sequence analysis of membrane proteins with web server SPLIT. Croatica Chemica Acta. 1999, 72: 975-997. Juretic D, Jkeroncic A, Zucic D: Sequence analysis of membrane proteins with web server SPLIT. Croatica Chemica Acta. 1999, 72: 975-997.
59.
go back to reference Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG: Sequence and organization of the human mitochondrial genome. Nature. 1981, 290: 457-465.CrossRefPubMed Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJ, Staden R, Young IG: Sequence and organization of the human mitochondrial genome. Nature. 1981, 290: 457-465.CrossRefPubMed
60.
go back to reference Horai S, Hayasaka K, Kondo R, Tsugane K, Takahata N: Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc Natl Acad Sci U S A. 1995, 92: 532-536.PubMedCentralCrossRefPubMed Horai S, Hayasaka K, Kondo R, Tsugane K, Takahata N: Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc Natl Acad Sci U S A. 1995, 92: 532-536.PubMedCentralCrossRefPubMed
61.
go back to reference De Vries DD, Went LN, Bruyn GW, Scholte HR, Hofstra RM, Bolhuis PA, van Oost BA: Genetic and biochemical impairment of mitochondrial complex I activity in a family with Leber hereditary optic neuropathy and hereditary spastic dystonia. Am J Hum Genet. 1996, 58: 703-711.PubMedCentralPubMed De Vries DD, Went LN, Bruyn GW, Scholte HR, Hofstra RM, Bolhuis PA, van Oost BA: Genetic and biochemical impairment of mitochondrial complex I activity in a family with Leber hereditary optic neuropathy and hereditary spastic dystonia. Am J Hum Genet. 1996, 58: 703-711.PubMedCentralPubMed
62.
go back to reference Jun AS, Brown MD, Wallace DC: A mitochondrial DNA mutation at nucleotide pair 14459 of the NADH dehydrogenase subunit 6 gene associated with maternally inherited Leber hereditary optic neuropathy and dystonia. Proc Natl Acad Sci U S A. 1994, 91: 6206-6210.PubMedCentralCrossRefPubMed Jun AS, Brown MD, Wallace DC: A mitochondrial DNA mutation at nucleotide pair 14459 of the NADH dehydrogenase subunit 6 gene associated with maternally inherited Leber hereditary optic neuropathy and dystonia. Proc Natl Acad Sci U S A. 1994, 91: 6206-6210.PubMedCentralCrossRefPubMed
63.
go back to reference Marzuki S, Noer AS, Lertrit P, Thyagarajan D, Kapsa R, Utthanaphol P, Byrne E: Normal variants of human mitochondrial DNA and translation products: the building of a reference data base. Hum Genet. 1991, 88: 139-145.CrossRefPubMed Marzuki S, Noer AS, Lertrit P, Thyagarajan D, Kapsa R, Utthanaphol P, Byrne E: Normal variants of human mitochondrial DNA and translation products: the building of a reference data base. Hum Genet. 1991, 88: 139-145.CrossRefPubMed
64.
go back to reference Johns DR, Neufeld MJ, Park RD: An ND-6 mitochondrial DNA mutation associated with Leber hereditary optic neuropathy. Biochem Biophys Res Commun. 1992, 187: 1551-1557.CrossRefPubMed Johns DR, Neufeld MJ, Park RD: An ND-6 mitochondrial DNA mutation associated with Leber hereditary optic neuropathy. Biochem Biophys Res Commun. 1992, 187: 1551-1557.CrossRefPubMed
65.
go back to reference Leo-Kottler B, Christ-Adler M, Baumann B, Zrenner E, Wissinger B: Leber's hereditary optic neuropathy: clinical and molecular genetic results obtained in a family with a new point mutation at nucleotide position 14498 in the ND 6 gene. Ger J Ophthalmol. 1996, 5: 233-240.PubMed Leo-Kottler B, Christ-Adler M, Baumann B, Zrenner E, Wissinger B: Leber's hereditary optic neuropathy: clinical and molecular genetic results obtained in a family with a new point mutation at nucleotide position 14498 in the ND 6 gene. Ger J Ophthalmol. 1996, 5: 233-240.PubMed
66.
go back to reference Sudoyo H, Sitepu M, Malik S, Poesponegoro HD, Marzuki S: Leber's hereditary optic neuropathy in Indonesia: two families with the mtDNA 11778G>A and 14484T>C mutations. Hum Mutat. 1998, Suppl 1: S271-4.CrossRefPubMed Sudoyo H, Sitepu M, Malik S, Poesponegoro HD, Marzuki S: Leber's hereditary optic neuropathy in Indonesia: two families with the mtDNA 11778G>A and 14484T>C mutations. Hum Mutat. 1998, Suppl 1: S271-4.CrossRefPubMed
67.
go back to reference Besch D, Leo-Kottler B, Zrenner E, Wissinger B: Leber's hereditary optic neuropathy: clinical and molecular genetic findings in a patient with a new mutation in the ND6 gene. Graefes Arch Clin Exp Ophthalmol. 1999, 237: 745-752.CrossRefPubMed Besch D, Leo-Kottler B, Zrenner E, Wissinger B: Leber's hereditary optic neuropathy: clinical and molecular genetic findings in a patient with a new mutation in the ND6 gene. Graefes Arch Clin Exp Ophthalmol. 1999, 237: 745-752.CrossRefPubMed
68.
go back to reference Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402.PubMedCentralCrossRefPubMed Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402.PubMedCentralCrossRefPubMed
69.
go back to reference Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22: 4673-4680.PubMedCentralCrossRefPubMed Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22: 4673-4680.PubMedCentralCrossRefPubMed
71.
go back to reference Lipman DJ, Pearson WR: Rapid and sensitive protein similarity searches. Science. 1985, 227: 1435-1441.CrossRefPubMed Lipman DJ, Pearson WR: Rapid and sensitive protein similarity searches. Science. 1985, 227: 1435-1441.CrossRefPubMed
72.
go back to reference Dayhoff HO, Schwartz RM, Orcutt BC: A model of evolutionary change in proteins. Atlas of Protein Sequence and Structure. 5: 345-352. Washington DC, National Biomedical Research Foundation Dayhoff HO, Schwartz RM, Orcutt BC: A model of evolutionary change in proteins. Atlas of Protein Sequence and Structure. 5: 345-352. Washington DC, National Biomedical Research Foundation
74.
go back to reference Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982, 157: 105-132.CrossRefPubMed Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol. 1982, 157: 105-132.CrossRefPubMed
75.
go back to reference Hulme EC, Birdsall MJM, Buckley MJ: Muscarinic receptor subtypes. Annual Review of Pharmacology and Toxicology. 1990, 30: 633-673. Palo Alto, CA, Annual Reviews Inc. Hulme EC, Birdsall MJM, Buckley MJ: Muscarinic receptor subtypes. Annual Review of Pharmacology and Toxicology. 1990, 30: 633-673. Palo Alto, CA, Annual Reviews Inc.
76.
go back to reference Eisenberg D, Schwartz E, Komarony M, Wall R: Normalized consensus hydrophobicity scale. Journal of Molecular Biology. 1984, 179: 125-142.CrossRefPubMed Eisenberg D, Schwartz E, Komarony M, Wall R: Normalized consensus hydrophobicity scale. Journal of Molecular Biology. 1984, 179: 125-142.CrossRefPubMed
77.
go back to reference Roseman MA: Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bonds. J Mol Biol. 1988, 200: 513-522.CrossRefPubMed Roseman MA: Hydrophilicity of polar amino acid side-chains is markedly reduced by flanking peptide bonds. J Mol Biol. 1988, 200: 513-522.CrossRefPubMed
78.
go back to reference Miyazawa S, Jernigan RL: : Estimation of effective inter-residue contact energies from protein crystal structures: quasi-chemical approximation. Macromolecules. 1985, 18: 34-552.CrossRef Miyazawa S, Jernigan RL: : Estimation of effective inter-residue contact energies from protein crystal structures: quasi-chemical approximation. Macromolecules. 1985, 18: 34-552.CrossRef
80.
go back to reference Rost B, Sander C: Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol. 1993, 232: 584-599.CrossRefPubMed Rost B, Sander C: Prediction of protein secondary structure at better than 70% accuracy. J Mol Biol. 1993, 232: 584-599.CrossRefPubMed
81.
go back to reference Rost B, Sander C: Combining evolutionary information and neural networks to predict protein secondary structure. Proteins. 1994, 19: 55-72.CrossRefPubMed Rost B, Sander C: Combining evolutionary information and neural networks to predict protein secondary structure. Proteins. 1994, 19: 55-72.CrossRefPubMed
82.
go back to reference Rost B, Sander C: Conservation and prediction of solvent accessibility in protein families. Proteins. 1994, 20: 216-226.CrossRefPubMed Rost B, Sander C: Conservation and prediction of solvent accessibility in protein families. Proteins. 1994, 20: 216-226.CrossRefPubMed
83.
go back to reference Sali A, Blundell TL: Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol. 1993, 234: 779-815.CrossRefPubMed Sali A, Blundell TL: Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol. 1993, 234: 779-815.CrossRefPubMed
84.
go back to reference Guex N, Peitsch MC: SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis. 1997, 18: 2714-2723.CrossRefPubMed Guex N, Peitsch MC: SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis. 1997, 18: 2714-2723.CrossRefPubMed
85.
go back to reference Berendsen HJC, van der Spoel D, van Drunen R: GROMACS: A message-passing parallel molecular dynamics implementation. Computer Physics Communications. 1995, 91: 43-56. 10.1016/0010-4655(95)00042-E.CrossRef Berendsen HJC, van der Spoel D, van Drunen R: GROMACS: A message-passing parallel molecular dynamics implementation. Computer Physics Communications. 1995, 91: 43-56. 10.1016/0010-4655(95)00042-E.CrossRef
86.
go back to reference Lindahl E, Hess B, van der Spoel D: GROMACS 3.0: A package for molecular simulation and trajectory analysis. Journal of Molecular Modeling. 2001, 7: 306-317. Lindahl E, Hess B, van der Spoel D: GROMACS 3.0: A package for molecular simulation and trajectory analysis. Journal of Molecular Modeling. 2001, 7: 306-317.
Metadata
Title
Mutation in mitochondrial complex I ND6 subunit is associated with defective response to hypoxia in human glioma cells
Authors
Carrie DeHaan
Bahram Habibi-Nazhad
Elizabeth Yan
Nicole Salloum
Matthew Parliament
Joan Allalunis-Turner
Publication date
01-12-2004
Publisher
BioMed Central
Published in
Molecular Cancer / Issue 1/2004
Electronic ISSN: 1476-4598
DOI
https://doi.org/10.1186/1476-4598-3-19

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