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Published in: BMC Medical Genetics 1/2013

Open Access 01-12-2013 | Research article

MLPA-based genotype–phenotype analysis in 1053 Chinese patients with DMD/BMD

Authors: Juan Yang, Shao Y Li, Ya Q Li, Ji Q Cao, Shan W Feng, Yan Y Wang, Yi X Zhan, Chang S Yu, Fei Chen, Jing Li, Xiao F Sun, Cheng Zhang

Published in: BMC Medical Genetics | Issue 1/2013

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Abstract

Background

Large-scale analysis of the transmission, mutation characteristics and the relationship between the reading frame and phenotype of the DMD gene has previously been performed in several countries, however, analogous studies have yet to be performed in Chinese populations.

Methods

Clinical data from 1053 Chinese patients with DMD/BMD were collected, and the DMD gene was tested by MLPA in all patients and 400 proband mothers. In 20 patients with negative MLPA, sequencing was also performed.

Results

We found that 27.50% of cases had a family medical history of DMD/BMD, and large rearrangements were identified in 70.56% of the probands, of which 59.35% and 11.21% were deletions or duplications, respectively. The carrier status of the mothers in the study was determined to be 50.75%, and it was established that the DMD mutation was inherited from the mother in 51.72% of the probands. Exons 45–54 and 3–22 were the most frequently deleted regions, and exons 3–11 and 21–37 were the most prevalently duplicated regions of the gene. Breakpoints mainly occurred in introns 43–55 for deletion mutations and in introns 2 and 7 for duplication mutations. No breakpoints were found at the 5 or 3 end of introns 31, 35, 36, 40, 65, 68, and 74–78 in any of the deletion or duplication mutations. The reading frame rule held true for 86.4% of the DMD patients and 74.55% of the BMD patients.

Conclusion

It is essential to increase physicians’ understanding of DMD/BMD, to promote scientific information, and to increase awareness in regards to genetic counseling and prenatal diagnosis in pedigrees with a family history of the disease, particularly in families with small DMD lesions in China. In addition, such a large-scale analysis will prove to be instructive for leading translational studies between basic science and clinical medicine.
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Literature
1.
go back to reference Davies KE, Pearson PL, Harper PS, et al: Linkage analysis of two cloned DNA sequences flanking the Duchenne muscular dystrophy locus on the short arm of the human X chromosome. Nucl Acids Res. 1983, 11 (8): 2303-2312. 10.1093/nar/11.8.2303.CrossRefPubMedPubMedCentral Davies KE, Pearson PL, Harper PS, et al: Linkage analysis of two cloned DNA sequences flanking the Duchenne muscular dystrophy locus on the short arm of the human X chromosome. Nucl Acids Res. 1983, 11 (8): 2303-2312. 10.1093/nar/11.8.2303.CrossRefPubMedPubMedCentral
2.
go back to reference Kingston HM, Thomas NS, Pearson PL, et al: Genetic linkage between Becker muscular dystrophy and a polymorphic DNA sequence on the short arm of the X chromosome. J Med Genet. 1983, 20 (4): 255-258. 10.1136/jmg.20.4.255.CrossRefPubMedPubMedCentral Kingston HM, Thomas NS, Pearson PL, et al: Genetic linkage between Becker muscular dystrophy and a polymorphic DNA sequence on the short arm of the X chromosome. J Med Genet. 1983, 20 (4): 255-258. 10.1136/jmg.20.4.255.CrossRefPubMedPubMedCentral
3.
go back to reference Hoffman EP, Brown RH, Kunkel LM: Dystrophin: the protein product of the Duchenne muscular dystrophy locus. Cell. 1987, 51 (6): 919-928. 10.1016/0092-8674(87)90579-4.CrossRefPubMed Hoffman EP, Brown RH, Kunkel LM: Dystrophin: the protein product of the Duchenne muscular dystrophy locus. Cell. 1987, 51 (6): 919-928. 10.1016/0092-8674(87)90579-4.CrossRefPubMed
4.
go back to reference Bushby KM, Thambyayah M, Gardner-Medwin D: Prevalence and incidence of Becker muscular dystrophy. Lancet. 1991, 337 (8748): 1022-1024. 10.1016/0140-6736(91)92671-N.CrossRefPubMed Bushby KM, Thambyayah M, Gardner-Medwin D: Prevalence and incidence of Becker muscular dystrophy. Lancet. 1991, 337 (8748): 1022-1024. 10.1016/0140-6736(91)92671-N.CrossRefPubMed
5.
go back to reference Emery AE: Population frequencies of inherited neuromuscular diseases: a world survey. Neuromuscul Disord. 1991, 1 (1): 19-29. 10.1016/0960-8966(91)90039-U.CrossRefPubMed Emery AE: Population frequencies of inherited neuromuscular diseases: a world survey. Neuromuscul Disord. 1991, 1 (1): 19-29. 10.1016/0960-8966(91)90039-U.CrossRefPubMed
6.
go back to reference Hoffman EP, Fischbeck KH, Brown RH, et al: Characterization of dystrophin in muscle-biopsy specimens from patients with Duchenne’s or Becker’s muscular dystrophy. N Engl J Med. 1988, 318 (21): 1363-1368. 10.1056/NEJM198805263182104.CrossRefPubMed Hoffman EP, Fischbeck KH, Brown RH, et al: Characterization of dystrophin in muscle-biopsy specimens from patients with Duchenne’s or Becker’s muscular dystrophy. N Engl J Med. 1988, 318 (21): 1363-1368. 10.1056/NEJM198805263182104.CrossRefPubMed
7.
go back to reference Nicholson LV, Johnson MA, Gardner-Medwin D, et al: Heterogeneity of dystrophin expression in patients with Duchenne and Becker muscular dystrophy. Acta Neuropathol. 1990, 80 (3): 239-250. 10.1007/BF00294640.CrossRefPubMed Nicholson LV, Johnson MA, Gardner-Medwin D, et al: Heterogeneity of dystrophin expression in patients with Duchenne and Becker muscular dystrophy. Acta Neuropathol. 1990, 80 (3): 239-250. 10.1007/BF00294640.CrossRefPubMed
8.
go back to reference Schouten JP, McElgunn CJ, Waaijer R, et al: Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Res. 2002, 30 (12): e57-10.1093/nar/gnf056.CrossRefPubMedPubMedCentral Schouten JP, McElgunn CJ, Waaijer R, et al: Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Res. 2002, 30 (12): e57-10.1093/nar/gnf056.CrossRefPubMedPubMedCentral
9.
go back to reference Roberts RG, Barby TF, Manners E, et al: Direct detection of dystrophin gene rearrangements by analysis of dystrophin mRNA in peripheral blood lymphocytes. Am J Hum Genet. 1991, 49 (2): 298-310.PubMedPubMedCentral Roberts RG, Barby TF, Manners E, et al: Direct detection of dystrophin gene rearrangements by analysis of dystrophin mRNA in peripheral blood lymphocytes. Am J Hum Genet. 1991, 49 (2): 298-310.PubMedPubMedCentral
10.
go back to reference den Dunnen JT, Antonarakis SE: Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion. Hum Mutat. 2000, 15 (1): 7-12. 10.1002/(SICI)1098-1004(200001)15:1<7::AID-HUMU4>3.0.CO;2-N.CrossRefPubMed den Dunnen JT, Antonarakis SE: Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion. Hum Mutat. 2000, 15 (1): 7-12. 10.1002/(SICI)1098-1004(200001)15:1<7::AID-HUMU4>3.0.CO;2-N.CrossRefPubMed
11.
go back to reference Janssen B, Hartmann C, Scholz V, et al: MLPA analysis for the detection of deletion, duplication and complex arrangements in the dystrophin gene: potential and pitfalls. Neurogenetics. 2005, 6 (1): 29-35. 10.1007/s10048-004-0204-1.CrossRefPubMed Janssen B, Hartmann C, Scholz V, et al: MLPA analysis for the detection of deletion, duplication and complex arrangements in the dystrophin gene: potential and pitfalls. Neurogenetics. 2005, 6 (1): 29-35. 10.1007/s10048-004-0204-1.CrossRefPubMed
12.
go back to reference Gatta V, Scarciolla O, Gaspari AR, et al: Identification of deletions and duplications of the DMD gene in affected males and carrier females by multiple ligation probe amplification (MLPA). Hum Genet. 2005, 117 (1): 92-98. 10.1007/s00439-005-1270-7.CrossRefPubMed Gatta V, Scarciolla O, Gaspari AR, et al: Identification of deletions and duplications of the DMD gene in affected males and carrier females by multiple ligation probe amplification (MLPA). Hum Genet. 2005, 117 (1): 92-98. 10.1007/s00439-005-1270-7.CrossRefPubMed
13.
go back to reference Tuffery-Giraud S, Béroud C, Leturcq F, et al: Genotype–Phenotype Analysis in 2,405 Patients with a Dystrophinopathy Using the UMD–DMD Database: A Model of Nationwide Knowledgebase. Hum Mutat. 2009, 30 (6): 934-945. 10.1002/humu.20976.CrossRefPubMed Tuffery-Giraud S, Béroud C, Leturcq F, et al: Genotype–Phenotype Analysis in 2,405 Patients with a Dystrophinopathy Using the UMD–DMD Database: A Model of Nationwide Knowledgebase. Hum Mutat. 2009, 30 (6): 934-945. 10.1002/humu.20976.CrossRefPubMed
14.
go back to reference Hu XY, Ray PN, Worton RG: Mechanisms of tandem duplication in the Duchenne muscular dystrophy gene include both homologous and nonhomologous intrachromosomal recombination. EMBO J. 1991, 10 (9): 2471-2477.PubMedPubMedCentral Hu XY, Ray PN, Worton RG: Mechanisms of tandem duplication in the Duchenne muscular dystrophy gene include both homologous and nonhomologous intrachromosomal recombination. EMBO J. 1991, 10 (9): 2471-2477.PubMedPubMedCentral
15.
go back to reference Zhang Z, Takeshima Y, Awano H, et al: Tandem duplications of two separate fragments of the dystrophin gene in a patient with Duchenne muscular dystrophy. J Hum Genet. 2008, 53 (3): 215-219. 10.1007/s10038-007-0235-1.CrossRefPubMed Zhang Z, Takeshima Y, Awano H, et al: Tandem duplications of two separate fragments of the dystrophin gene in a patient with Duchenne muscular dystrophy. J Hum Genet. 2008, 53 (3): 215-219. 10.1007/s10038-007-0235-1.CrossRefPubMed
16.
go back to reference White SJ, Aartsma-Rus A, Flanigan KM, et al: Duplications in the DMD gene. Hum Mutat. 2006, 27 (9): 938-945. 10.1002/humu.20367.CrossRefPubMed White SJ, Aartsma-Rus A, Flanigan KM, et al: Duplications in the DMD gene. Hum Mutat. 2006, 27 (9): 938-945. 10.1002/humu.20367.CrossRefPubMed
17.
go back to reference Gangopadhyay SB, Sherratt TG, Heckmatt JZ, et al: Dystrophin in frameshift deletion patients with Becker muscular dystrophy. Am J Hum Genet. 1992, 51 (3): 562-570.PubMedPubMedCentral Gangopadhyay SB, Sherratt TG, Heckmatt JZ, et al: Dystrophin in frameshift deletion patients with Becker muscular dystrophy. Am J Hum Genet. 1992, 51 (3): 562-570.PubMedPubMedCentral
18.
go back to reference Malhotra SB, Hart KA, Klamut HJ, et al: Frame-shift deletions in patients with Duchenne and Becker muscular dystrophy. Science. 1988, 242 (4879): 755-759. 10.1126/science.3055295.CrossRefPubMed Malhotra SB, Hart KA, Klamut HJ, et al: Frame-shift deletions in patients with Duchenne and Becker muscular dystrophy. Science. 1988, 242 (4879): 755-759. 10.1126/science.3055295.CrossRefPubMed
19.
go back to reference Chelly J, Gilgenkrantz H, Lambert M, et al: Effect of dystrophin gene deletions on mRNA levels and processing in Duchenne and Becker muscular dystrophies. Cell. 1990, 63 (6): 1239-1248. 10.1016/0092-8674(90)90419-F.CrossRefPubMed Chelly J, Gilgenkrantz H, Lambert M, et al: Effect of dystrophin gene deletions on mRNA levels and processing in Duchenne and Becker muscular dystrophies. Cell. 1990, 63 (6): 1239-1248. 10.1016/0092-8674(90)90419-F.CrossRefPubMed
20.
go back to reference Gualandi F, Rimessi P, Trabanelli C, et al: Intronic breakpoint definition and transcription analysis in DMD/BMD patients with deletion/duplication at the 5’ mutation hot spot of the dystrophin gene. Gene. 2006, 370: 26-33.CrossRefPubMed Gualandi F, Rimessi P, Trabanelli C, et al: Intronic breakpoint definition and transcription analysis in DMD/BMD patients with deletion/duplication at the 5’ mutation hot spot of the dystrophin gene. Gene. 2006, 370: 26-33.CrossRefPubMed
21.
go back to reference Winnard AV, Mendell JR, Prior TW, et al: Frameshift deletions of exons 3–7 and revertant fibers in Duchenne muscular dystrophy: mechanisms of dystrophin production. Am J Hum Genet. 1995, 56 (1): 158-166.PubMedPubMedCentral Winnard AV, Mendell JR, Prior TW, et al: Frameshift deletions of exons 3–7 and revertant fibers in Duchenne muscular dystrophy: mechanisms of dystrophin production. Am J Hum Genet. 1995, 56 (1): 158-166.PubMedPubMedCentral
22.
go back to reference Yin H, Moulton HM, Seow Y, et al: Cell-penetrating peptide-conjugated antisense oligonucleotides restore systemic muscle and cardiac dystrophin expression and function. Hum Mol Genet. 2008, 17 (24): 3909-3918. 10.1093/hmg/ddn293.CrossRefPubMed Yin H, Moulton HM, Seow Y, et al: Cell-penetrating peptide-conjugated antisense oligonucleotides restore systemic muscle and cardiac dystrophin expression and function. Hum Mol Genet. 2008, 17 (24): 3909-3918. 10.1093/hmg/ddn293.CrossRefPubMed
23.
go back to reference Cirak S, Arechavala-Gomeza V, Guglieri M, et al: Exon skipping and dystrophin restoration in patients with Duchenne muscular dystrophy after systemic phosphorodiamidate morpholino oligomer treatment: an open-label, phase 2, dose-escalation study. Lancet. 2011, 378 (9791): 595-605. 10.1016/S0140-6736(11)60756-3.CrossRefPubMedPubMedCentral Cirak S, Arechavala-Gomeza V, Guglieri M, et al: Exon skipping and dystrophin restoration in patients with Duchenne muscular dystrophy after systemic phosphorodiamidate morpholino oligomer treatment: an open-label, phase 2, dose-escalation study. Lancet. 2011, 378 (9791): 595-605. 10.1016/S0140-6736(11)60756-3.CrossRefPubMedPubMedCentral
Metadata
Title
MLPA-based genotype–phenotype analysis in 1053 Chinese patients with DMD/BMD
Authors
Juan Yang
Shao Y Li
Ya Q Li
Ji Q Cao
Shan W Feng
Yan Y Wang
Yi X Zhan
Chang S Yu
Fei Chen
Jing Li
Xiao F Sun
Cheng Zhang
Publication date
01-12-2013
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2013
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/1471-2350-14-29

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