Skip to main content
Top
Published in: European Radiology 10/2018

01-10-2018 | Neuro

Minimisation of Signal Intensity Differences in Distortion Correction Approaches of Brain Magnetic Resonance Diffusion Tensor Imaging

Authors: Dong-Hoon Lee, Do-Wan Lee, David Henry, Hae-Jin Park, Bong-Soo Han, Dong-Cheol Woo

Published in: European Radiology | Issue 10/2018

Login to get access

Abstract

Objectives

To evaluate the effects of signal intensity differences between the b0 image and diffusion tensor imaging (DTI) in the image registration process.

Methods

To correct signal intensity differences between the b0 image and DTI data, a simple image intensity compensation (SIMIC) method, which is a b0 image re-calculation process from DTI data, was applied before the image registration. The re-calculated b0 image (b0ext) from each diffusion direction was registered to the b0 image acquired through the MR scanning (b0nd) with two types of cost functions and their transformation matrices were acquired. These transformation matrices were then used to register the DTI data. For quantifications, the dice similarity coefficient (DSC) values, diffusion scalar matrix, and quantified fibre numbers and lengths were calculated.

Results

The combined SIMIC method with two cost functions showed the highest DSC value (0.802 ± 0.007). Regarding diffusion scalar values and numbers and lengths of fibres from the corpus callosum, superior longitudinal fasciculus, and cortico-spinal tract, only using normalised cross correlation (NCC) showed a specific tendency toward lower values in the brain regions.

Conclusion

Image-based distortion correction with SIMIC for DTI data would help in image analysis by accounting for signal intensity differences as one additional option for DTI analysis.

Key points

We evaluated the effects of signal intensity differences at DTI registration.
The non-diffusion-weighted image re-calculation process from DTI data was applied.
SIMIC can minimise the signal intensity differences at DTI registration.
Literature
1.
go back to reference Alexander AL, Lee JE, Lazar M, Field AS (2007) Diffusion tensor imaging of the brain. Neurotherapeutics 4:316–329CrossRef Alexander AL, Lee JE, Lazar M, Field AS (2007) Diffusion tensor imaging of the brain. Neurotherapeutics 4:316–329CrossRef
2.
go back to reference Lee DH, Lee DW, Han BS (2016) Topographic organization of motor fibre tracts in the human brain: findings in multiple locations using magnetic resonance diffusion tensor tractography. European Radiology 26:1751–1759CrossRef Lee DH, Lee DW, Han BS (2016) Topographic organization of motor fibre tracts in the human brain: findings in multiple locations using magnetic resonance diffusion tensor tractography. European Radiology 26:1751–1759CrossRef
3.
go back to reference Wakana S, Jiang HY, Nagae-Poetscher LM, van Zijl PCM, Mori S (2004) Fiber tract-based atlas of human white matter anatomy. Radiology 230:77–87CrossRef Wakana S, Jiang HY, Nagae-Poetscher LM, van Zijl PCM, Mori S (2004) Fiber tract-based atlas of human white matter anatomy. Radiology 230:77–87CrossRef
4.
go back to reference Wu WT, Rigolo L, O'Donnell LJ, Norton I, Shriver S, Golby AJ (2012) Visual pathway study using in vivo diffusion tensor imaging tractography to complement classic anatomy. Neurosurgery 70 Wu WT, Rigolo L, O'Donnell LJ, Norton I, Shriver S, Golby AJ (2012) Visual pathway study using in vivo diffusion tensor imaging tractography to complement classic anatomy. Neurosurgery 70
5.
go back to reference Kreilkamp BAK, Zaca D, Papinutto N, Jovicich J (2016) Retrospective head motion correction approaches for diffusion tensor imaging: effects of preprocessing choices on biases and reproducibility of scalar diffusion metrics. Journal of Magnetic Resonance Imaging 43:99–106CrossRef Kreilkamp BAK, Zaca D, Papinutto N, Jovicich J (2016) Retrospective head motion correction approaches for diffusion tensor imaging: effects of preprocessing choices on biases and reproducibility of scalar diffusion metrics. Journal of Magnetic Resonance Imaging 43:99–106CrossRef
6.
go back to reference Mohammadi S, Moller HE, Kugel H, Muller DK, Deppe M (2010) Correcting eddy current and motion effects by affine whole-brain registrations: evaluation of three-dimensional distortions and comparison with slicewise correction. Magnetic Resonance in Medicine 64:1047–1056CrossRef Mohammadi S, Moller HE, Kugel H, Muller DK, Deppe M (2010) Correcting eddy current and motion effects by affine whole-brain registrations: evaluation of three-dimensional distortions and comparison with slicewise correction. Magnetic Resonance in Medicine 64:1047–1056CrossRef
7.
go back to reference Lee DH, Lee DW, Han BS (2015) Simple image intensity compensation (SIMIC) method prior to application of distortion correction algorithms in brain diffusion tensor magnetic resonance imaging: Validation test for two cost functions of distortion correction algorithms. International Journal of Imaging Systems and Technology 25:328–333CrossRef Lee DH, Lee DW, Han BS (2015) Simple image intensity compensation (SIMIC) method prior to application of distortion correction algorithms in brain diffusion tensor magnetic resonance imaging: Validation test for two cost functions of distortion correction algorithms. International Journal of Imaging Systems and Technology 25:328–333CrossRef
8.
go back to reference Danielian LE, Iwata NK, Thomasson DM, Floeter MK (2010) Reliability of fiber tracking measurements in diffusion tensor imaging for longitudinal study. Neuroimage 49:1572–1580CrossRef Danielian LE, Iwata NK, Thomasson DM, Floeter MK (2010) Reliability of fiber tracking measurements in diffusion tensor imaging for longitudinal study. Neuroimage 49:1572–1580CrossRef
9.
go back to reference Smith SM (2002) Fast robust automated brain extraction. Human Brain Mapping 17:143–155CrossRef Smith SM (2002) Fast robust automated brain extraction. Human Brain Mapping 17:143–155CrossRef
10.
go back to reference Jiang HY, van Zijl PCM, Kim J, Pearlson GD, Mori S (2006) DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking. Computer Methods and Programs in Biomedicine 81:106–116CrossRef Jiang HY, van Zijl PCM, Kim J, Pearlson GD, Mori S (2006) DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking. Computer Methods and Programs in Biomedicine 81:106–116CrossRef
11.
go back to reference Kamali A, Flanders AE, Brody J, Hunter JV, Hasan KM (2014) Tracing superior longitudinal fasciculus connectivity in the human brain using high resolution diffusion tensor tractography. Brain Structure & Function 219:269–281CrossRef Kamali A, Flanders AE, Brody J, Hunter JV, Hasan KM (2014) Tracing superior longitudinal fasciculus connectivity in the human brain using high resolution diffusion tensor tractography. Brain Structure & Function 219:269–281CrossRef
12.
go back to reference Rajagopalan V, Pioro EP (2017) Differential involvement of corticospinal tract (CST) fibers in UMN-predominant ALS patients with or without CST hyperintensity: A diffusion tensor tractography study. Neuroimage-Clinical 14:574–579CrossRef Rajagopalan V, Pioro EP (2017) Differential involvement of corticospinal tract (CST) fibers in UMN-predominant ALS patients with or without CST hyperintensity: A diffusion tensor tractography study. Neuroimage-Clinical 14:574–579CrossRef
13.
go back to reference Oguro S, Tokuda J, Elhawary H et al (2009) MRI signal intensity based B-spline nonrigid registration for pre- and intraoperative imaging during prostate brachytherapy. Journal of Magnetic Resonance Imaging 30:1052–1058CrossRef Oguro S, Tokuda J, Elhawary H et al (2009) MRI signal intensity based B-spline nonrigid registration for pre- and intraoperative imaging during prostate brachytherapy. Journal of Magnetic Resonance Imaging 30:1052–1058CrossRef
14.
go back to reference Zou KH, Warfield SK, Bharatha A et al (2004) Statistical validation of image segmentation quality based on a spatial overlap index - Scientific reports. Academic Radiology 11:178–189CrossRef Zou KH, Warfield SK, Bharatha A et al (2004) Statistical validation of image segmentation quality based on a spatial overlap index - Scientific reports. Academic Radiology 11:178–189CrossRef
15.
go back to reference Alterovitz R, Goldberg K, Pouliot J et al (2006) Registration of MR prostate images with biomechanical modeling and nonlinear parameter estimation. Medical Physics 33:446–454CrossRef Alterovitz R, Goldberg K, Pouliot J et al (2006) Registration of MR prostate images with biomechanical modeling and nonlinear parameter estimation. Medical Physics 33:446–454CrossRef
16.
go back to reference Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297–302CrossRef Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297–302CrossRef
17.
go back to reference Rohde GK, Barnett AS, Basser PJ, Marenco S, Pierpaoli C (2004) Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magnetic Resonance in Medicine 51:103–114CrossRef Rohde GK, Barnett AS, Basser PJ, Marenco S, Pierpaoli C (2004) Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magnetic Resonance in Medicine 51:103–114CrossRef
18.
go back to reference Taylor PA, Alhamud A, van der Kouwe A, Saleh MG, Laughton B, Meintjes E (2016) Assessing the performance of different DTI motion correction strategies in the presence of EPI distortion correction. Human Brain Mapping 37:4405–4424CrossRef Taylor PA, Alhamud A, van der Kouwe A, Saleh MG, Laughton B, Meintjes E (2016) Assessing the performance of different DTI motion correction strategies in the presence of EPI distortion correction. Human Brain Mapping 37:4405–4424CrossRef
19.
go back to reference Bastin ME (1999) Correction of eddy current-induced artefacts in diffusion tensor imaging using iterative cross-correlation. Magnetic Resonance Imaging 17:1011–1024CrossRef Bastin ME (1999) Correction of eddy current-induced artefacts in diffusion tensor imaging using iterative cross-correlation. Magnetic Resonance Imaging 17:1011–1024CrossRef
20.
go back to reference Haselgrove JC, Moore JR (1996) Correction for distortion of echo-planar images used to calculate the apparent diffusion coefficient. Magnetic Resonance in Medicine 36:960–964CrossRef Haselgrove JC, Moore JR (1996) Correction for distortion of echo-planar images used to calculate the apparent diffusion coefficient. Magnetic Resonance in Medicine 36:960–964CrossRef
21.
go back to reference Horsfield MA (1999) Mapping eddy current induced fields for the correction of diffusion-weighted echo planar images. Magnetic Resonance Imaging 17:1335–1345CrossRef Horsfield MA (1999) Mapping eddy current induced fields for the correction of diffusion-weighted echo planar images. Magnetic Resonance Imaging 17:1335–1345CrossRef
22.
go back to reference Damon BM, Froeling M, Buck AK et al (2017) Skeletal muscle diffusion tensor-MRI fiber tracking: rationale, data acquisition and analysis methods, applications and future directions. NMR Biomed 30 Damon BM, Froeling M, Buck AK et al (2017) Skeletal muscle diffusion tensor-MRI fiber tracking: rationale, data acquisition and analysis methods, applications and future directions. NMR Biomed 30
24.
go back to reference Toktas ZO, Tanrikulu B, Koban O, Kilic T, Konya D (2016) Diffusion tensor imaging of cervical spinal cord: A quantitative diagnostic tool in cervical spondylotic myelopathy. J Craniovertebr Junction Spine 7:26–30CrossRef Toktas ZO, Tanrikulu B, Koban O, Kilic T, Konya D (2016) Diffusion tensor imaging of cervical spinal cord: A quantitative diagnostic tool in cervical spondylotic myelopathy. J Craniovertebr Junction Spine 7:26–30CrossRef
Metadata
Title
Minimisation of Signal Intensity Differences in Distortion Correction Approaches of Brain Magnetic Resonance Diffusion Tensor Imaging
Authors
Dong-Hoon Lee
Do-Wan Lee
David Henry
Hae-Jin Park
Bong-Soo Han
Dong-Cheol Woo
Publication date
01-10-2018
Publisher
Springer Berlin Heidelberg
Published in
European Radiology / Issue 10/2018
Print ISSN: 0938-7994
Electronic ISSN: 1432-1084
DOI
https://doi.org/10.1007/s00330-018-5382-6

Other articles of this Issue 10/2018

European Radiology 10/2018 Go to the issue