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Published in: Systematic Reviews 1/2019

Open Access 01-12-2019 | Acute Myeloid Leukemia | Protocol

Evaluation of the impact of single-nucleotide polymorphisms on treatment response, survival and toxicity with cytarabine and anthracyclines in patients with acute myeloid leukaemia: a systematic review protocol

Authors: Taynah Cascaes Puty, Jonathan Souza Sarraf, Tabata Cristina Do Carmo Almeida, Valter Cordeiro Barbosa Filho, Luis Eduardo Werneck de Carvalho, Fernando Luiz Affonso Fonseca, Fernando Adami

Published in: Systematic Reviews | Issue 1/2019

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Abstract

Introduction

Acute myeloid leukaemia is the most common type of acute leukaemia in the world. Thus, the study of genetic alterations, such as single-nucleotide polymorphisms (SNPs), has contributed to a better understanding of the mechanisms underlying leukaemogenesis, to improve the prognosis and to increase the survival of these patients. However, there is no synthesis of evidence in the literature evaluating the quality of evidence and the risk of bias in the studies such that the results can be translated. Thus, this systematic review protocol aims to assess the impact of SNPs on genes involved in the metabolism of cytarabine and anthracyclines with respect to survival, treatment response and toxicity in patients with AML.

Methods

This systematic review protocol is based on PRISMA guidelines and includes searches in six electronic databases, contact with authors, repositories of clinical trials, and cancer research. Studies published in peer-reviewed journals will be included if they meet the eligibility criteria: (a) samples composed of individuals of any age, of both sexes, with a diagnosis of AML, regardless of the time of diagnosis of disease; (b) participants who have undergone or are undergoing cytarabine- and anthracycline-associated chemotherapy or cytarabine-only chemotherapy; and (c) in vivo studies. Studies that include patients with promyelocytic leukaemia (Fab type 3) will be excluded because this disease has different treatment. The process of study selection, data extraction, and evaluation/synthesis will be performed in duplicate. Assessment of methodological quality and risk of bias will be performed using the Cochrane Risk of Bias Tool for randomized clinical studies and the Downs-Black Checklist for cohort and case-control studies. The synthesis of evidence will include the level of evidence based on the GRADE protocol. A meta-analysis of the association between SNPs and outcomes may be performed based on Cochrane guidelines.

Discussion

It is expected that clinical decisions for AML patients will consider evidence-based practices to contribute to better patient management. In this way, we will be able to define how to treat patients with AML to improve their survival and quality of life.

Systematic review registration

Appendix
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Literature
1.
go back to reference Marshall R, Tlagadi A, Bronze M, Kana V, Naidoo S, Wiggill T, et al. Lower frequency of NPM1 and FLT3-ITD mutations in a South African adult de novo AML cohort. Int J Lab Hematol. 2014;36(6):656–64.CrossRef Marshall R, Tlagadi A, Bronze M, Kana V, Naidoo S, Wiggill T, et al. Lower frequency of NPM1 and FLT3-ITD mutations in a South African adult de novo AML cohort. Int J Lab Hematol. 2014;36(6):656–64.CrossRef
2.
go back to reference Feng J-H, Guo X-P, Chen Y-Y, Wang Z-J, Cheng Y-P, Tang Y-M. Prognostic significance of IDH1 mutations in acute myeloid leukemia: a meta-analysis. Am J Blood Res. 2012;2(4):254.PubMedPubMedCentral Feng J-H, Guo X-P, Chen Y-Y, Wang Z-J, Cheng Y-P, Tang Y-M. Prognostic significance of IDH1 mutations in acute myeloid leukemia: a meta-analysis. Am J Blood Res. 2012;2(4):254.PubMedPubMedCentral
3.
go back to reference Ilyas AM, Ahmad S, Faheem M, Naseer MI, Kumosani TA, Al-Qahtani MH, et al. Next generation sequencing of acute myeloid leukemia: influencing prognosis. BMC Genomics. 2015;16(1):S5.CrossRef Ilyas AM, Ahmad S, Faheem M, Naseer MI, Kumosani TA, Al-Qahtani MH, et al. Next generation sequencing of acute myeloid leukemia: influencing prognosis. BMC Genomics. 2015;16(1):S5.CrossRef
4.
go back to reference Sayar H, Bashardoust P. Therapies for acute myeloid leukemia: vosaroxin. Onco Targets Ther. 2017;10:3957.CrossRef Sayar H, Bashardoust P. Therapies for acute myeloid leukemia: vosaroxin. Onco Targets Ther. 2017;10:3957.CrossRef
5.
go back to reference Li Y, Zhu B. Acute myeloid leukemia with DNMT3A mutations. Leukemia Lymphoma. 2014;55(9):2002–12.CrossRef Li Y, Zhu B. Acute myeloid leukemia with DNMT3A mutations. Leukemia Lymphoma. 2014;55(9):2002–12.CrossRef
6.
go back to reference Zheng Q, Shuai X, Ye Y, Jin Y, Jiang N, Chen X, et al. The role of polymorphisms of stromal-derived factor-1 and CXC receptor 4 in acute myeloid leukemia and leukemia cell dissemination. Gene. 2016;588(2):103–8.CrossRef Zheng Q, Shuai X, Ye Y, Jin Y, Jiang N, Chen X, et al. The role of polymorphisms of stromal-derived factor-1 and CXC receptor 4 in acute myeloid leukemia and leukemia cell dissemination. Gene. 2016;588(2):103–8.CrossRef
7.
go back to reference Wu D, Duan C, Chen L, Chen S. Efficacy and safety of different doses of cytarabine in consolidation therapy for adult acute myeloid leukemia patients: a network meta-analysis. Sci Rep. 2017;7(1):9509. Wu D, Duan C, Chen L, Chen S. Efficacy and safety of different doses of cytarabine in consolidation therapy for adult acute myeloid leukemia patients: a network meta-analysis. Sci Rep. 2017;7(1):9509.
8.
go back to reference Hay S. Global, regional, and national incidence, prevalence, and years lived with disability for 328 diseases and injuries for 195 countries, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016; 2017. Hay S. Global, regional, and national incidence, prevalence, and years lived with disability for 328 diseases and injuries for 195 countries, 1990–2016: a systematic analysis for the Global Burden of Disease Study 2016; 2017.
9.
go back to reference Cancer IAfRo. GLOBOCAN 2012: estimated cancer incidence, mortality and prevalence worldwide in 2012. 2012. Cancer IAfRo. GLOBOCAN 2012: estimated cancer incidence, mortality and prevalence worldwide in 2012. 2012.
11.
go back to reference Abraham A, Devasia AJ, Varatharajan S, Karathedath S, Balasubramanian P, Mathews V. Effect of cytosine arabinoside metabolizing enzyme expression on drug toxicity in acute myeloid leukemia. Ann Hematol. 2015;94(5):883–5.CrossRef Abraham A, Devasia AJ, Varatharajan S, Karathedath S, Balasubramanian P, Mathews V. Effect of cytosine arabinoside metabolizing enzyme expression on drug toxicity in acute myeloid leukemia. Ann Hematol. 2015;94(5):883–5.CrossRef
12.
go back to reference Falk IJ, Fyrberg A, Paul E, Nahi H, Hermanson M, Rosenquist R, et al. Decreased survival in normal karyotype AML with single-nucleotide polymorphisms in genes encoding the AraC metabolizing enzymes cytidine deaminase and 5′-nucleotidase. Am J Hematol. 2013;88(12):1001–6.CrossRef Falk IJ, Fyrberg A, Paul E, Nahi H, Hermanson M, Rosenquist R, et al. Decreased survival in normal karyotype AML with single-nucleotide polymorphisms in genes encoding the AraC metabolizing enzymes cytidine deaminase and 5′-nucleotidase. Am J Hematol. 2013;88(12):1001–6.CrossRef
13.
go back to reference Kim LH, Cheong HS, Koh Y, Ahn K-S, Lee C, Kim H-L, et al. Cytidine deaminase polymorphisms and worse treatment response in normal karyotype AML. J Hum Genet. 2015;60(12):749.CrossRef Kim LH, Cheong HS, Koh Y, Ahn K-S, Lee C, Kim H-L, et al. Cytidine deaminase polymorphisms and worse treatment response in normal karyotype AML. J Hum Genet. 2015;60(12):749.CrossRef
15.
go back to reference Megías-Vericat JE, Montesinos P, Herrero MJ, Bosó V, Martínez-Cuadrón D, Poveda JL, et al. Pharmacogenomics and the treatment of acute myeloid leukemia. Pharmacogenomics. 2016;17(11):1245–72.CrossRef Megías-Vericat JE, Montesinos P, Herrero MJ, Bosó V, Martínez-Cuadrón D, Poveda JL, et al. Pharmacogenomics and the treatment of acute myeloid leukemia. Pharmacogenomics. 2016;17(11):1245–72.CrossRef
16.
go back to reference Abraham A, Varatharajan S, Abbas S, Zhang W, Shaji RV, Ahmed R, et al. Cytidine deaminase genetic variants influence RNA expression and cytarabine cytotoxicity in acute myeloid leukemia. Pharmacogenomics. 2012;13(3):269–82.CrossRef Abraham A, Varatharajan S, Abbas S, Zhang W, Shaji RV, Ahmed R, et al. Cytidine deaminase genetic variants influence RNA expression and cytarabine cytotoxicity in acute myeloid leukemia. Pharmacogenomics. 2012;13(3):269–82.CrossRef
17.
go back to reference Mahlknecht U, Dransfeld C-L, Bulut N, Kramer M, Thiede C, Ehninger G, et al. SNP analyses in cytarabine metabolizing enzymes in AML patients and their impact on treatment response and patient survival: identification of CDA SNP C-451T as an independent prognostic parameter for survival. Leukemia. 2009;23(10):1929–33.CrossRef Mahlknecht U, Dransfeld C-L, Bulut N, Kramer M, Thiede C, Ehninger G, et al. SNP analyses in cytarabine metabolizing enzymes in AML patients and their impact on treatment response and patient survival: identification of CDA SNP C-451T as an independent prognostic parameter for survival. Leukemia. 2009;23(10):1929–33.CrossRef
18.
go back to reference Drenberg CD, Paugh SW, Pounds SB, Shi L, Orwick SJ, Li L, et al. Inherited variation in OATP1B1 is associated with treatment outcome in acute myeloid leukemia. Clin Pharmacol Ther. 2016;99(6):651–60.CrossRef Drenberg CD, Paugh SW, Pounds SB, Shi L, Orwick SJ, Li L, et al. Inherited variation in OATP1B1 is associated with treatment outcome in acute myeloid leukemia. Clin Pharmacol Ther. 2016;99(6):651–60.CrossRef
19.
go back to reference Seeringer A, Yi-Jing H, Schlenk R, Doehner K, Doehner H, Kirchheiner J. 9242 Pharmacogenetic factors in metabolism, transport and toxicity of cytarabine treatment in patients with AML. Eur J Cancer Suppl. 2009;7(2):572–3.CrossRef Seeringer A, Yi-Jing H, Schlenk R, Doehner K, Doehner H, Kirchheiner J. 9242 Pharmacogenetic factors in metabolism, transport and toxicity of cytarabine treatment in patients with AML. Eur J Cancer Suppl. 2009;7(2):572–3.CrossRef
20.
go back to reference Shi J-Y, Shi Z-Z, Zhang S-J, Zhu Y-M, Gu B-W, Li G, et al. Association between single nucleotide polymorphisms in deoxycytidine kinase and treatment response among acute myeloid leukaemia patients. Pharmacogenet Genomics. 2004;14(11):759–68.CrossRef Shi J-Y, Shi Z-Z, Zhang S-J, Zhu Y-M, Gu B-W, Li G, et al. Association between single nucleotide polymorphisms in deoxycytidine kinase and treatment response among acute myeloid leukaemia patients. Pharmacogenet Genomics. 2004;14(11):759–68.CrossRef
21.
go back to reference Cheong HS, Koh Y, Ahn K-S, Lee C, Shin HD, Yoon S-S. NT5C3 polymorphisms and outcome of first induction chemotherapy in acute myeloid leukemia. Pharmacogenet Genomics. 2014;24(9):436–41.CrossRef Cheong HS, Koh Y, Ahn K-S, Lee C, Shin HD, Yoon S-S. NT5C3 polymorphisms and outcome of first induction chemotherapy in acute myeloid leukemia. Pharmacogenet Genomics. 2014;24(9):436–41.CrossRef
22.
go back to reference Yue L, Saikawa Y, Ota K, Tanaka M, Nishimura R, Uehara T, et al. A functional single-nucleotide polymorphism in the human cytidine deaminase gene contributing to ara-C sensitivity. Pharmacogenet Genomics. 2003;13(1):29–38.CrossRef Yue L, Saikawa Y, Ota K, Tanaka M, Nishimura R, Uehara T, et al. A functional single-nucleotide polymorphism in the human cytidine deaminase gene contributing to ara-C sensitivity. Pharmacogenet Genomics. 2003;13(1):29–38.CrossRef
23.
go back to reference Fitzgerald SM, Goyal RK, Osborne WR, Roy JD, Wilson JW, Ferrell R. Identification of functional single nucleotide polymorphism haplotypes in the cytidine deaminase promoter. Hum Genet. 2006;119(3):276.CrossRef Fitzgerald SM, Goyal RK, Osborne WR, Roy JD, Wilson JW, Ferrell R. Identification of functional single nucleotide polymorphism haplotypes in the cytidine deaminase promoter. Hum Genet. 2006;119(3):276.CrossRef
24.
go back to reference Cao X, Mitra AK, Pounds S, Crews KR, Gandhi V, Plunkett W, et al. RRM1 and RRM2 pharmacogenetics: association with phenotypes in HapMap cell lines and acute myeloid leukemia patients. Pharmacogenomics. 2013;14(12):1449–66.CrossRef Cao X, Mitra AK, Pounds S, Crews KR, Gandhi V, Plunkett W, et al. RRM1 and RRM2 pharmacogenetics: association with phenotypes in HapMap cell lines and acute myeloid leukemia patients. Pharmacogenomics. 2013;14(12):1449–66.CrossRef
25.
go back to reference Lamba JK. Pharmacogenomics of cytarabine in childhood leukemia. Pharmacogenomics. 2011;12(12):1629–32.CrossRef Lamba JK. Pharmacogenomics of cytarabine in childhood leukemia. Pharmacogenomics. 2011;12(12):1629–32.CrossRef
26.
go back to reference Whirl-Carrillo M, McDonagh E, Hebert J, Gong L, Sangkuhl K, Thorn C, et al. Pharmacogenomics knowledge for personalized medicine. Clin Pharmacol Ther. 2012;92(4):414–7.CrossRef Whirl-Carrillo M, McDonagh E, Hebert J, Gong L, Sangkuhl K, Thorn C, et al. Pharmacogenomics knowledge for personalized medicine. Clin Pharmacol Ther. 2012;92(4):414–7.CrossRef
27.
go back to reference Megias-Vericat JE, Martinez-Cuadron D, Herrero MJ, Alino SF, Poveda JL, Sanz MA, Montesinos P. Pharmacogenetics of metabolic genes of anthracyclines in acute myeloid leukemia. Current drug metabolism. 2018;19(1):55–74.CrossRef Megias-Vericat JE, Martinez-Cuadron D, Herrero MJ, Alino SF, Poveda JL, Sanz MA, Montesinos P. Pharmacogenetics of metabolic genes of anthracyclines in acute myeloid leukemia. Current drug metabolism. 2018;19(1):55–74.CrossRef
28.
go back to reference Agarwal SK, Mangal N, Menon RM, Freise KJ, Salem AH. Response rates as predictors of overall survival: a meta-analysis of acute myeloid leukemia trials. J Cancer. 2017;8(9):1562.CrossRef Agarwal SK, Mangal N, Menon RM, Freise KJ, Salem AH. Response rates as predictors of overall survival: a meta-analysis of acute myeloid leukemia trials. J Cancer. 2017;8(9):1562.CrossRef
29.
go back to reference Medina-Sanson A, Ramírez-Pacheco A, Moreno-Guerrero SS, Dorantes-Acosta EM, Sánchez-Preza M, Reyes-López A. Role of genetic polymorphisms of deoxycytidine kinase and cytidine deaminase to predict risk of death in children with acute myeloid leukemia. Biomed Res Int. 2015;2015. Medina-Sanson A, Ramírez-Pacheco A, Moreno-Guerrero SS, Dorantes-Acosta EM, Sánchez-Preza M, Reyes-López A. Role of genetic polymorphisms of deoxycytidine kinase and cytidine deaminase to predict risk of death in children with acute myeloid leukemia. Biomed Res Int. 2015;2015.
30.
go back to reference Abraham A, Varatharajan S, Karathedath S, Philip C, Lakshmi KM, Jayavelu AK, et al. RNA expression of genes involved in cytarabine metabolism and transport predicts cytarabine response in acute myeloid leukemia. Pharmacogenomics. 2015;16(8):877–90.CrossRef Abraham A, Varatharajan S, Karathedath S, Philip C, Lakshmi KM, Jayavelu AK, et al. RNA expression of genes involved in cytarabine metabolism and transport predicts cytarabine response in acute myeloid leukemia. Pharmacogenomics. 2015;16(8):877–90.CrossRef
31.
go back to reference Megías-Vericat JE, Montesinos P, Herrero MJ, Moscardó F, Bosó V, Martínez-Cuadrón D, et al. Impact of novel polymorphisms related to cytotoxicity of cytarabine in the induction treatment of acute myeloid leukemia. Pharmacogenet Genomics. 2017;27(7):270–4.CrossRef Megías-Vericat JE, Montesinos P, Herrero MJ, Moscardó F, Bosó V, Martínez-Cuadrón D, et al. Impact of novel polymorphisms related to cytotoxicity of cytarabine in the induction treatment of acute myeloid leukemia. Pharmacogenet Genomics. 2017;27(7):270–4.CrossRef
32.
go back to reference PROSPERO C. International prospective register of systematic reviews. 2016. PROSPERO C. International prospective register of systematic reviews. 2016.
33.
go back to reference Moher D, Liberati A, Tetzlaff J, Altman DG. Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement. PLoS Med. 2009;6(7):e1000097.CrossRef Moher D, Liberati A, Tetzlaff J, Altman DG. Preferred reporting items for systematic reviews and meta-analyses: the PRISMA statement. PLoS Med. 2009;6(7):e1000097.CrossRef
34.
go back to reference Higgins JPT, Green S (editors). Cochrane Handbook for Systematic Reviews of Interventions Version 5.1.0 [updated March 2011]. The Cochrane Collaboration. 2011. Available from www.handbook.cochrane.org. Higgins JPT, Green S (editors). Cochrane Handbook for Systematic Reviews of Interventions Version 5.1.0 [updated March 2011]. The Cochrane Collaboration. 2011. Available from www.​handbook.​cochrane.​org.
35.
go back to reference Ho GJ, Liew SM, Ng CJ, Hisham Shunmugam R, Glasziou P. Development of a search strategy for an evidence based retrieval service. (1932-6203 (Electronic)). Ho GJ, Liew SM, Ng CJ, Hisham Shunmugam R, Glasziou P. Development of a search strategy for an evidence based retrieval service. (1932-6203 (Electronic)).
36.
go back to reference Huang X, Lin J, Demner-Fushman D. Evaluation of PICO as a knowledge representation for clinical questions. AMIA Ann Symp Proc. 2006;2006:359–63. Huang X, Lin J, Demner-Fushman D. Evaluation of PICO as a knowledge representation for clinical questions. AMIA Ann Symp Proc. 2006;2006:359–63.
37.
go back to reference Webster JA, Tibes R, Morris L, Blackford AL, Litzow M, Patnaik M, et al. Randomized phase II trial of cytosine Arabinoside with and without the CHK1 inhibitor MK-8776 in relapsed and refractory acute myeloid leukemia. Leuk Res. 2017;61:108–16.CrossRef Webster JA, Tibes R, Morris L, Blackford AL, Litzow M, Patnaik M, et al. Randomized phase II trial of cytosine Arabinoside with and without the CHK1 inhibitor MK-8776 in relapsed and refractory acute myeloid leukemia. Leuk Res. 2017;61:108–16.CrossRef
39.
go back to reference Higgins JP, Altman DG, Gøtzsche PC, Jüni P, Moher D, Oxman AD, et al. The Cochrane Collaboration’s tool for assessing risk of bias in randomised trials. Bmj. 2011;343:d5928.CrossRef Higgins JP, Altman DG, Gøtzsche PC, Jüni P, Moher D, Oxman AD, et al. The Cochrane Collaboration’s tool for assessing risk of bias in randomised trials. Bmj. 2011;343:d5928.CrossRef
40.
go back to reference Downs SH, Black N. The feasibility of creating a checklist for the assessment of the methodological quality both of randomised and non-randomised studies of health care interventions. J Epidemiol Community Health. 1998;52(6):377–84.CrossRef Downs SH, Black N. The feasibility of creating a checklist for the assessment of the methodological quality both of randomised and non-randomised studies of health care interventions. J Epidemiol Community Health. 1998;52(6):377–84.CrossRef
41.
go back to reference Brasil. Ministério da Saúde. Secretaria de Ciência TeIEDdCeT. Diretrizes metodológicas : Sistema GRADE – Manual de graduação da qualidade da evidência e força de recomendação para tomada de decisão em saúde. 2014. Brasil. Ministério da Saúde. Secretaria de Ciência TeIEDdCeT. Diretrizes metodológicas : Sistema GRADE – Manual de graduação da qualidade da evidência e força de recomendação para tomada de decisão em saúde. 2014.
42.
go back to reference Guyatt G, Oxman AD, Akl EA, Kunz R, Vist G, Brozek J, et al. GRADE guidelines: 1. Introduction—GRADE evidence profiles and summary of findings tables. J Clin Epidemiol. 2011;64(4):383–94.CrossRef Guyatt G, Oxman AD, Akl EA, Kunz R, Vist G, Brozek J, et al. GRADE guidelines: 1. Introduction—GRADE evidence profiles and summary of findings tables. J Clin Epidemiol. 2011;64(4):383–94.CrossRef
43.
go back to reference Guyatt GH, Ebrahim S, Alonso-Coello P, Johnston BC, Mathioudakis AG, Briel M, et al. GRADE guidelines 17: assessing the risk of bias associated with missing participant outcome data in a body of evidence. J Clin Epidemiol. 2017;87:14–22.CrossRef Guyatt GH, Ebrahim S, Alonso-Coello P, Johnston BC, Mathioudakis AG, Briel M, et al. GRADE guidelines 17: assessing the risk of bias associated with missing participant outcome data in a body of evidence. J Clin Epidemiol. 2017;87:14–22.CrossRef
Metadata
Title
Evaluation of the impact of single-nucleotide polymorphisms on treatment response, survival and toxicity with cytarabine and anthracyclines in patients with acute myeloid leukaemia: a systematic review protocol
Authors
Taynah Cascaes Puty
Jonathan Souza Sarraf
Tabata Cristina Do Carmo Almeida
Valter Cordeiro Barbosa Filho
Luis Eduardo Werneck de Carvalho
Fernando Luiz Affonso Fonseca
Fernando Adami
Publication date
01-12-2019
Publisher
BioMed Central
Published in
Systematic Reviews / Issue 1/2019
Electronic ISSN: 2046-4053
DOI
https://doi.org/10.1186/s13643-019-1011-y

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