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Published in: Trials 1/2020

Open Access 01-12-2020 | Methodology

Graphing and reporting heterogeneous treatment effects through reference classes

Authors: James A. Watson, Chris C. Holmes

Published in: Trials | Issue 1/2020

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Abstract

Background

Exploration and modelling of heterogeneous treatment effects as a function of baseline covariates is an important aspect of precision medicine in randomised controlled trials (RCTs). Randomisation generally guarantees the internal validity of an RCT, but heterogeneity in treatment effect can reduce external validity. Estimation of heterogeneous treatment effects is usually done via a predictive model for individual outcomes, where one searches for interactions between treatment allocation and important patient baseline covariates. However, such models are prone to overfitting and multiple testing and typically demand a transformation of the outcome measurement, for example, from the absolute risk in the original RCT to log-odds of risk in the predictive model.

Methods

We show how reference classes derived from baseline covariates can be used to explore heterogeneous treatment effects via a two-stage approach. We first estimate a risk score which captures on a single dimension some of the heterogeneity in outcomes of the trial population. Heterogeneity in the treatment effect can then be explored via reweighting schemes along this axis of variation. This two-stage approach bypasses the search for interactions with multiple covariates, thus protecting against multiple testing. It also allows for exploration of heterogeneous treatment effects on the original outcome scale of the RCT. This approach would typically be applied to multivariable models of baseline risk to assess the stability of average treatment effects with respect to the distribution of risk in the population studied.

Case study

We illustrate this approach using the single largest randomised treatment trial in severe falciparum malaria and demonstrate how the estimated treatment effect in terms of absolute mortality risk reduction increases considerably in higher risk strata.

Conclusions

‘Local’ and ‘tilting’ reweighting schemes based on ranking patients by baseline risk can be used as a general approach for exploring, graphing and reporting heterogeneity of treatment effect in RCTs.

Trial registration

ISRCTN clinical trials registry: ISRCTN50258054. Prospectively registered on 22 July 2005.
Appendix
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Literature
1.
go back to reference Kent DM, Nelson J, Dahabreh IJ, Rothwell PM, Altman DG, Hayward RA. Risk and treatment effect heterogeneity: re-analysis of individual participant data from 32 large clinical trials. Int J Epidemiol. 2016; 45(6):2075–88.PubMedPubMedCentral Kent DM, Nelson J, Dahabreh IJ, Rothwell PM, Altman DG, Hayward RA. Risk and treatment effect heterogeneity: re-analysis of individual participant data from 32 large clinical trials. Int J Epidemiol. 2016; 45(6):2075–88.PubMedPubMedCentral
2.
go back to reference Kent DM, Hayward RA. Limitations of applying summary results of clinical trials to individual patients: the need for risk stratification. J Am Med Assoc. 2007; 298(10):1209–12.CrossRef Kent DM, Hayward RA. Limitations of applying summary results of clinical trials to individual patients: the need for risk stratification. J Am Med Assoc. 2007; 298(10):1209–12.CrossRef
3.
go back to reference Hayward RA, Kent DM, Vijan S, Hofer TP. Multivariable risk prediction can greatly enhance the statistical power of clinical trial subgroup analysis. BMC Med Res Methodol. 2006; 6(1):18.PubMedPubMedCentralCrossRef Hayward RA, Kent DM, Vijan S, Hofer TP. Multivariable risk prediction can greatly enhance the statistical power of clinical trial subgroup analysis. BMC Med Res Methodol. 2006; 6(1):18.PubMedPubMedCentralCrossRef
4.
go back to reference Kent DM, Rothwell PM, Ioannidis JPA, Altman DG, Hayward RA. Assessing and reporting heterogeneity in treatment effects in clinical trials: a proposal. Trials. 2010; 11(1):85.PubMedPubMedCentralCrossRef Kent DM, Rothwell PM, Ioannidis JPA, Altman DG, Hayward RA. Assessing and reporting heterogeneity in treatment effects in clinical trials: a proposal. Trials. 2010; 11(1):85.PubMedPubMedCentralCrossRef
5.
go back to reference Kent DM, Steyerberg E, van Klaveren D. Personalized evidence based medicine: predictive approaches to heterogeneous treatment effects. Br Med J. 2018; 363:k4245.CrossRef Kent DM, Steyerberg E, van Klaveren D. Personalized evidence based medicine: predictive approaches to heterogeneous treatment effects. Br Med J. 2018; 363:k4245.CrossRef
6.
go back to reference Hansen BB. The prognostic analogue of the propensity score. Biometrika. 2008; 95(2):481–8.CrossRef Hansen BB. The prognostic analogue of the propensity score. Biometrika. 2008; 95(2):481–8.CrossRef
7.
go back to reference Sussman JB, Kent DM, Nelson JP, Hayward RA. Improving diabetes prevention with benefit based tailored treatment: risk based reanalysis of diabetes prevention program. Br Med J. 2015; 350:h454.CrossRef Sussman JB, Kent DM, Nelson JP, Hayward RA. Improving diabetes prevention with benefit based tailored treatment: risk based reanalysis of diabetes prevention program. Br Med J. 2015; 350:h454.CrossRef
9.
go back to reference Sun XIoannidis JPA, Agoritsas T, Alba AC, Guyatt G. How to use a subgroup analysis: users’ guide to the medical literature. J Am Med Assoc. 2014; 311(4):405–11.CrossRef Sun XIoannidis JPA, Agoritsas T, Alba AC, Guyatt G. How to use a subgroup analysis: users’ guide to the medical literature. J Am Med Assoc. 2014; 311(4):405–11.CrossRef
10.
go back to reference Rothwell PM. Subgroup analysis in randomised controlled trials: importance, indications, and interpretation. Lancet. 2005; 365(9454):176–86.PubMedCrossRef Rothwell PM. Subgroup analysis in randomised controlled trials: importance, indications, and interpretation. Lancet. 2005; 365(9454):176–86.PubMedCrossRef
11.
go back to reference Wand MP, Chris Jones M. Kernel smoothing. London: Chapman and Hall/CRC; 1994.CrossRef Wand MP, Chris Jones M. Kernel smoothing. London: Chapman and Hall/CRC; 1994.CrossRef
12.
go back to reference Nadaraya EA. On estimating regression. Theory Probab Appl. 1964; 9(1):141–2.CrossRef Nadaraya EA. On estimating regression. Theory Probab Appl. 1964; 9(1):141–2.CrossRef
13.
go back to reference Watson GS. Smooth regression analysis. Sankhyā Indian J Stat Seri A. 1964; 26(4):359–72. Watson GS. Smooth regression analysis. Sankhyā Indian J Stat Seri A. 1964; 26(4):359–72.
14.
go back to reference Burke JF, Hayward RA, Nelson JP, Kent DM. Using internally developed risk models to assess heterogeneity in treatment effects in clinical trials. Circ Cardiovasc Qual Outcome. 2014; 7(1):163–9.CrossRef Burke JF, Hayward RA, Nelson JP, Kent DM. Using internally developed risk models to assess heterogeneity in treatment effects in clinical trials. Circ Cardiovasc Qual Outcome. 2014; 7(1):163–9.CrossRef
15.
go back to reference Hanson J, Lee SJ, Mohanty S, Faiz M, Anstey NM, kaew Charunwatthana P, Yunus EB, Mishra SK, Tjitra E, Price RN, et al.A simple score to predict the outcome of severe malaria in adults. Clin Infect Dis. 2010; 50(5):679–85.PubMedPubMedCentralCrossRef Hanson J, Lee SJ, Mohanty S, Faiz M, Anstey NM, kaew Charunwatthana P, Yunus EB, Mishra SK, Tjitra E, Price RN, et al.A simple score to predict the outcome of severe malaria in adults. Clin Infect Dis. 2010; 50(5):679–85.PubMedPubMedCentralCrossRef
17.
go back to reference Dondorp AM, Nosten F, Stepniewska K, Day N, White N. Artesunate versus quinine for treatment of severe falciparum malaria: a randomised trial. Lancet. 2005; 366(9487):717–25.PubMedCrossRef Dondorp AM, Nosten F, Stepniewska K, Day N, White N. Artesunate versus quinine for treatment of severe falciparum malaria: a randomised trial. Lancet. 2005; 366(9487):717–25.PubMedCrossRef
18.
go back to reference Dondorp AM, Fanello CI, Hendriksen ICE, Gomes E, Seni A, Chhaganlal KD, Bojang K, Olaosebikan R, Anunobi N, Maitland K, et al.Artesunate versus quinine in the treatment of severe falciparum malaria in African children (AQUAMAT): an open-label, randomised trial. Lancet. 2010; 376(9753):1647–57.PubMedPubMedCentralCrossRef Dondorp AM, Fanello CI, Hendriksen ICE, Gomes E, Seni A, Chhaganlal KD, Bojang K, Olaosebikan R, Anunobi N, Maitland K, et al.Artesunate versus quinine in the treatment of severe falciparum malaria in African children (AQUAMAT): an open-label, randomised trial. Lancet. 2010; 376(9753):1647–57.PubMedPubMedCentralCrossRef
19.
go back to reference Ashley EA, Dhorda M, Fairhurst RM, Amaratunga C, Lim P, Suon S, Sreng S, Anderson JM, Mao S, et al.Spread of artemisinin resistance in Plasmodium falciparum malaria. New Engl J Med. 2014; 371(5):411–23.PubMedCrossRef Ashley EA, Dhorda M, Fairhurst RM, Amaratunga C, Lim P, Suon S, Sreng S, Anderson JM, Mao S, et al.Spread of artemisinin resistance in Plasmodium falciparum malaria. New Engl J Med. 2014; 371(5):411–23.PubMedCrossRef
20.
go back to reference Imwong M, Hien TT, Thuy-Nhien NT, Dondorp AM, White NJ. Spread of a single multidrug resistant malaria parasite lineage (PfPailin) to Vietnam. Lancet Infect Dis. 2017; 17(10):1022–3.PubMedCrossRef Imwong M, Hien TT, Thuy-Nhien NT, Dondorp AM, White NJ. Spread of a single multidrug resistant malaria parasite lineage (PfPailin) to Vietnam. Lancet Infect Dis. 2017; 17(10):1022–3.PubMedCrossRef
21.
go back to reference Maude RJ, Hoque G, Hasan MU, Sayeed A, Akter S, Samad R, Alam B, Yunus EB, Rahman R, Rahman W, Chowdhury R, Seal T, Charunwatthana P, Chang CC, White NJ, Abul Faiz M, Day NPJ, Dondorp AM, Hossain Amir. Timing of enteral feeding in cerebral malaria in resource-poor settings: a randomized trial. PLOS One. 2011; 6(11):1–7. https://doi.org/10.1371/journal.pone.0027273.CrossRef Maude RJ, Hoque G, Hasan MU, Sayeed A, Akter S, Samad R, Alam B, Yunus EB, Rahman R, Rahman W, Chowdhury R, Seal T, Charunwatthana P, Chang CC, White NJ, Abul Faiz M, Day NPJ, Dondorp AM, Hossain Amir. Timing of enteral feeding in cerebral malaria in resource-poor settings: a randomized trial. PLOS One. 2011; 6(11):1–7. https://​doi.​org/​10.​1371/​journal.​pone.​0027273.CrossRef
22.
go back to reference Maude RJ, Silamut K, Plewes K, Charunwatthana P, Ho M, Abul Faiz M, Rahman R, Hossain MA, Hassan MU, Yunus EB. Randomized controlled trial of levamisole hydrochloride as adjunctive therapy in severe falciparum malaria with high parasitemia. J Infect Dis. 2013; 209(1):120–9.PubMedPubMedCentralCrossRef Maude RJ, Silamut K, Plewes K, Charunwatthana P, Ho M, Abul Faiz M, Rahman R, Hossain MA, Hassan MU, Yunus EB. Randomized controlled trial of levamisole hydrochloride as adjunctive therapy in severe falciparum malaria with high parasitemia. J Infect Dis. 2013; 209(1):120–9.PubMedPubMedCentralCrossRef
23.
go back to reference Newton PN, Angus BJ, Chierakul W, Dondorp A, Ruangveerayuth R, Silamut K, Teerapong P, Suputtamongkol Y, Looareesuwan S, White NJ. Randomized comparison of artesunate and quinine in the treatment of severe falciparum malaria. Clin Infect Dis. 2003; 37(1):7–16. https://doi.org/10.1086/375059.PubMedCrossRef Newton PN, Angus BJ, Chierakul W, Dondorp A, Ruangveerayuth R, Silamut K, Teerapong P, Suputtamongkol Y, Looareesuwan S, White NJ. Randomized comparison of artesunate and quinine in the treatment of severe falciparum malaria. Clin Infect Dis. 2003; 37(1):7–16. https://​doi.​org/​10.​1086/​375059.PubMedCrossRef
24.
go back to reference Plewes K, Kingston HWF, Ghose A, Wattanakul T, Uddin Hassan MM, Haider MS, Dutta PK, Islam MA, Alam S, Jahangir SM, Zahed ASM, Sattar MA, Hassan Chowdhury MA, Herdmen MT, Leopold SJ, Ishioka H, Piera KA, Charunwatthana P, Silamut K, Yeo TW, Lee SJ, Mukaka M, Maude RJ, Turner GDH, Faiz MA, Tarning J, Oates JA, Anstey NM, White NJ, Day NPJ, Hossain MA, Jackson Roberts II L, Dondorp AM. Acetaminophen as a renoprotective adjunctive treatment in patients with severe and moderately severe falciparum malaria: a randomized, controlled, open-label trial. Clin Infect Dis. 2018; April. https://doi.org/10.1093/cid/ciy213/4930781. Plewes K, Kingston HWF, Ghose A, Wattanakul T, Uddin Hassan MM, Haider MS, Dutta PK, Islam MA, Alam S, Jahangir SM, Zahed ASM, Sattar MA, Hassan Chowdhury MA, Herdmen MT, Leopold SJ, Ishioka H, Piera KA, Charunwatthana P, Silamut K, Yeo TW, Lee SJ, Mukaka M, Maude RJ, Turner GDH, Faiz MA, Tarning J, Oates JA, Anstey NM, White NJ, Day NPJ, Hossain MA, Jackson Roberts II L, Dondorp AM. Acetaminophen as a renoprotective adjunctive treatment in patients with severe and moderately severe falciparum malaria: a randomized, controlled, open-label trial. Clin Infect Dis. 2018; April. https://​doi.​org/​10.​1093/​cid/​ciy213/​4930781.
25.
go back to reference Phu NH, Tuan PQ, Day N, Mai NTH, Chau TTH, Chuong LV, Sinh DX, White NJ, Farrar J, Hien TT. Randomized controlled trial of artesunate or artemether in Vietnamese adults with severe falciparum malaria. Malar J. 2010; 9(1):97.PubMedPubMedCentralCrossRef Phu NH, Tuan PQ, Day N, Mai NTH, Chau TTH, Chuong LV, Sinh DX, White NJ, Farrar J, Hien TT. Randomized controlled trial of artesunate or artemether in Vietnamese adults with severe falciparum malaria. Malar J. 2010; 9(1):97.PubMedPubMedCentralCrossRef
27.
go back to reference Hien TT, Day NPJ, Phu NH, Mai NTH, Chau TTH, Loc PP, Sinh DX, Chuong LV, Vinh H, Waller D, et al.A controlled trial of artemether or quinine in Vietnamese adults with severe falciparum malaria. New Engl J Med. 1996; 335(2):76–83.CrossRef Hien TT, Day NPJ, Phu NH, Mai NTH, Chau TTH, Loc PP, Sinh DX, Chuong LV, Vinh H, Waller D, et al.A controlled trial of artemether or quinine in Vietnamese adults with severe falciparum malaria. New Engl J Med. 1996; 335(2):76–83.CrossRef
Metadata
Title
Graphing and reporting heterogeneous treatment effects through reference classes
Authors
James A. Watson
Chris C. Holmes
Publication date
01-12-2020
Publisher
BioMed Central
Published in
Trials / Issue 1/2020
Electronic ISSN: 1745-6215
DOI
https://doi.org/10.1186/s13063-020-04306-1

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