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Published in: Italian Journal of Pediatrics 1/2019

Open Access 01-12-2019 | Imipenem | Research

Isolation and identification of Pandoraea spp. From bronchoalveolar lavage of cystic fibrosis patients in Iran

Authors: Mohammad Tabatabaei, Mahdi Dastbarsar, Mohammad Ashkan Moslehi

Published in: Italian Journal of Pediatrics | Issue 1/2019

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Abstract

Background

Pandoraea species are gram negative, motile, non-spore forming, rod shaped and oxidase positive, obligate aerobes bacteria, and have one polar flagellum. Most of Pandoraea species are associated with lung infections in cystic fibrosis patients. Cystic fibrosis is the most prevalent autosomal recessive hereditary disease in the world that affects various organs of the body. The main important cause of death in these patients is lung involvement. This study was conducted to isolate and identify Pandoraea bacterium from bronchoalveolar lavage and sputum samples of cystic fibrosis patients in Shiraz, Iran.

Methods

In this research 31 samples of bronchoalveolar lavage and sputum were examined by culture and PCR method. Then confirmed isolates were evaluated for susceptibility to different antibiotics and ability to produce biofilm.

Results

The results of this study after cultivation, purification and DNA extraction led to the isolation of 4 Pandoraea bacterium by PCR using specific primers. Antibiotic susceptibility test were indicated all isolates were resistant to gentamicin, amikacin and imipenem and susceptible to ciprofloxacin, trimethoprim-sulfumethoxazole, piperacillin and tetracycline. Ability to create biofilm was indicated by some of Pandoraea isolates. According to findings of this study, ability to synthesis biofilm by Pandoraea isolates and resistance to some antibiotics are very important.

Conclusions

Our study notes the role of P. pnomenusa as an emerging pathogen that can cause chronic lung colonization in CF patients. Identification tools need to be accurate and must be based on molecular techniques. Also our findings should raise awareness about antibiotic resistance in cystic fibrosis patients in Iran and ability of including bacterial agents to produce biofilm is an alarm for public health. Thus clinicians should exercise caution about finding of clinical relevance of this pathogen to the infection and prescribing antibiotics, especially in cases of children infections.
Literature
1.
go back to reference Coenye T, Falsen E, Hoste B, Ohle’n M, Goris J, JRW G, et al. Description of Pandoraea gen. Nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov. Int J Syst Evol Microbiol. 2000;50:887–99.CrossRef Coenye T, Falsen E, Hoste B, Ohle’n M, Goris J, JRW G, et al. Description of Pandoraea gen. Nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov. Int J Syst Evol Microbiol. 2000;50:887–99.CrossRef
2.
go back to reference Daneshvar MI, Hollis DG, Steigerwalt AG, Whitney AM, Spangler L, Douglas MP, et al. Assignment of CDC weak oxidizer group 2 (WO-2) to the genus Pandoraea and characterization of three new Pandoraea genomospecies. J Clin Microbiol. 2001;39:1819–26.PubMedPubMedCentralCrossRef Daneshvar MI, Hollis DG, Steigerwalt AG, Whitney AM, Spangler L, Douglas MP, et al. Assignment of CDC weak oxidizer group 2 (WO-2) to the genus Pandoraea and characterization of three new Pandoraea genomospecies. J Clin Microbiol. 2001;39:1819–26.PubMedPubMedCentralCrossRef
6.
go back to reference Henry DA, Mahenthiralingam E, Vandamme P, Coenye T, Speert DP. Phenotypic methods for determining genomovar status of the Burkholderia cepacia complex. J Clin Microbiol. 2001;39:1073–8.PubMedPubMedCentralCrossRef Henry DA, Mahenthiralingam E, Vandamme P, Coenye T, Speert DP. Phenotypic methods for determining genomovar status of the Burkholderia cepacia complex. J Clin Microbiol. 2001;39:1073–8.PubMedPubMedCentralCrossRef
7.
go back to reference Riordan JR, Rommens JM, Kerem B, Alon N, Rozmahel R, Grzelczak Z, et al. Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA. Science. 1989;245:1066–73.PubMedCrossRef Riordan JR, Rommens JM, Kerem B, Alon N, Rozmahel R, Grzelczak Z, et al. Identification of the cystic fibrosis gene: cloning and characterization of complementary DNA. Science. 1989;245:1066–73.PubMedCrossRef
8.
go back to reference Matsui H, Grubb BR, Tarran R, Randell SH, Gatzy JT, Davis CW, et al. Evidence for periciliary liquid layer depletion, not abnormal ion composition, in the pathogenesis of cystic fibrosis airways disease. Cell. 1998;95:1005–15.PubMedCrossRef Matsui H, Grubb BR, Tarran R, Randell SH, Gatzy JT, Davis CW, et al. Evidence for periciliary liquid layer depletion, not abnormal ion composition, in the pathogenesis of cystic fibrosis airways disease. Cell. 1998;95:1005–15.PubMedCrossRef
9.
go back to reference Gibson RL, Burns JL, Ramsey BW. Pathophysiology and management of pulmonary infections in cystic fibrosis. Am J RespirCrit Care Med. 2003;168:918–51.CrossRef Gibson RL, Burns JL, Ramsey BW. Pathophysiology and management of pulmonary infections in cystic fibrosis. Am J RespirCrit Care Med. 2003;168:918–51.CrossRef
11.
go back to reference LiPuma JJ. Burkholderia and emerging pathogens in cystic fibrosis. Semin Respir Crit Care Med. 2003;24:681–92.PubMedCrossRef LiPuma JJ. Burkholderia and emerging pathogens in cystic fibrosis. Semin Respir Crit Care Med. 2003;24:681–92.PubMedCrossRef
12.
go back to reference Pimentel JD, MacLeod C. Misidentification of Pandoraea sputorum isolated from sputum of a patient with cystic fibrosis and review of Pandoraea species infections in transplant patients. J Clin Microbiol. 2008;46:3165–8.PubMedPubMedCentralCrossRef Pimentel JD, MacLeod C. Misidentification of Pandoraea sputorum isolated from sputum of a patient with cystic fibrosis and review of Pandoraea species infections in transplant patients. J Clin Microbiol. 2008;46:3165–8.PubMedPubMedCentralCrossRef
13.
go back to reference Atkinson RM, Lipuma JJ, Rosenbluth DB, Dunne WM Jr. Chronic colonization with Pandoraea apista in cystic fibrosis patients determined by repetitive-element-sequence PCR. J Clin Microbiol. 2006;44:833–6.PubMedPubMedCentralCrossRef Atkinson RM, Lipuma JJ, Rosenbluth DB, Dunne WM Jr. Chronic colonization with Pandoraea apista in cystic fibrosis patients determined by repetitive-element-sequence PCR. J Clin Microbiol. 2006;44:833–6.PubMedPubMedCentralCrossRef
14.
go back to reference Stryjewski ME, LiPuma JJ, Messier RH Jr, Reller LB, Alexander BD. Sepsis, multiple organ failure, and death due to Pandoraea pnomenusa infection after lung transplantation. J Clin Microbiol. 2003;41:2255–7.PubMedPubMedCentralCrossRef Stryjewski ME, LiPuma JJ, Messier RH Jr, Reller LB, Alexander BD. Sepsis, multiple organ failure, and death due to Pandoraea pnomenusa infection after lung transplantation. J Clin Microbiol. 2003;41:2255–7.PubMedPubMedCentralCrossRef
15.
go back to reference Schneider I, Queenan AM, Bauernfeind A. Novel carbapenem-hydrolyzing oxacillinase OXA-62 from Pandoraea pnomenusa. Antimicrob Agents Chemother. 2006;50:1330–5.PubMedPubMedCentralCrossRef Schneider I, Queenan AM, Bauernfeind A. Novel carbapenem-hydrolyzing oxacillinase OXA-62 from Pandoraea pnomenusa. Antimicrob Agents Chemother. 2006;50:1330–5.PubMedPubMedCentralCrossRef
16.
go back to reference Burns JL, Jonas M, Chi EY, Clark DK, Berger A, Griffith A. Invasion of respiratory epithelial cells by Burkholderia (Pseudomonas) cepacia. Infect Immun. 1996;64:4054–9.PubMedPubMedCentral Burns JL, Jonas M, Chi EY, Clark DK, Berger A, Griffith A. Invasion of respiratory epithelial cells by Burkholderia (Pseudomonas) cepacia. Infect Immun. 1996;64:4054–9.PubMedPubMedCentral
17.
go back to reference Cieri MV, Mayer-Hamblett N, Griffith A, Burns JL. Correlation between an in vitro invasion assay and a murine model of Burkholderia cepacia lung infection. Infect Immun. 2002;70:108–6.CrossRef Cieri MV, Mayer-Hamblett N, Griffith A, Burns JL. Correlation between an in vitro invasion assay and a murine model of Burkholderia cepacia lung infection. Infect Immun. 2002;70:108–6.CrossRef
18.
go back to reference Duff C, Murphy PG, Callaghan M, McClean S. Differences in invasion and translocation of Burkholderia cepacia complex species in polarized lung epithelial cells in vitro. Microb Pathog. 2006;4:183–92.CrossRef Duff C, Murphy PG, Callaghan M, McClean S. Differences in invasion and translocation of Burkholderia cepacia complex species in polarized lung epithelial cells in vitro. Microb Pathog. 2006;4:183–92.CrossRef
19.
go back to reference Caraher E, Collins J, Herbert G, Philip G, Murphy PG, Gallagher CG, Crowe MJ, et al. Evaluation of in vitro virulence characteristics of the genus Pandoraea in lung epithelial cells. J Med Microbiol. 2008;57(Pt 1):15–20.PubMedCrossRef Caraher E, Collins J, Herbert G, Philip G, Murphy PG, Gallagher CG, Crowe MJ, et al. Evaluation of in vitro virulence characteristics of the genus Pandoraea in lung epithelial cells. J Med Microbiol. 2008;57(Pt 1):15–20.PubMedCrossRef
21.
go back to reference Caraher E, Duff C, Mullen T, Mc Keon S, Murphy P, Callaghan M, McClean S. Invasion and biofilm formation of Burkholderia dolosa is comparable with Burkholderia cenocepacia and Burkholderia multivorans. J Cyst Fibros. 2007;6:49–56.PubMedCrossRef Caraher E, Duff C, Mullen T, Mc Keon S, Murphy P, Callaghan M, McClean S. Invasion and biofilm formation of Burkholderia dolosa is comparable with Burkholderia cenocepacia and Burkholderia multivorans. J Cyst Fibros. 2007;6:49–56.PubMedCrossRef
22.
go back to reference Chernish RN, Aaron SD. Approach to resistant gram negative bacterial pulmonary infections in patients with cystic fibrosis. Curr Opin Pulm Med. 2003;9:509–15.PubMedCrossRef Chernish RN, Aaron SD. Approach to resistant gram negative bacterial pulmonary infections in patients with cystic fibrosis. Curr Opin Pulm Med. 2003;9:509–15.PubMedCrossRef
23.
go back to reference Hoiby N, Krogh Johansen H, Moser C, Song Z, Ciofu O, Kharazmi A. Pseudomonas aeruginosa and the in vitro and in vivo biofilm mode of growth. Microbes Infect. 2001;3:23–35.PubMedCrossRef Hoiby N, Krogh Johansen H, Moser C, Song Z, Ciofu O, Kharazmi A. Pseudomonas aeruginosa and the in vitro and in vivo biofilm mode of growth. Microbes Infect. 2001;3:23–35.PubMedCrossRef
24.
go back to reference Yu H, Head NE. Persistent infections and immunity in cystic fibrosis. Front Biosci. 2002;7:d442–57.PubMedCrossRef Yu H, Head NE. Persistent infections and immunity in cystic fibrosis. Front Biosci. 2002;7:d442–57.PubMedCrossRef
25.
go back to reference Moore JE, Coenye T, Vandamme P, Elborn JS. First report of Pandoraea norimbergensis isolated from food-potential clinical significance. Food Microbiol. 2001;18:113–4.CrossRef Moore JE, Coenye T, Vandamme P, Elborn JS. First report of Pandoraea norimbergensis isolated from food-potential clinical significance. Food Microbiol. 2001;18:113–4.CrossRef
26.
27.
go back to reference CLSI. M100-S25. Performance standards for antimicrobial susceptibility testing; Twenty-fifth informational supplement; 2015. CLSI. M100-S25. Performance standards for antimicrobial susceptibility testing; Twenty-fifth informational supplement; 2015.
28.
go back to reference Merritt J, Kadour D, O'Toole G. Growing and analyzing static biofilms, Curr Protoc Microbiol. 01 2005; Unite1B.1. Merritt J, Kadour D, O'Toole G. Growing and analyzing static biofilms, Curr Protoc Microbiol. 01 2005; Unite1B.1.
29.
go back to reference Wakimoto N, Nishi J, Sheikh J, Nataro J, Sarantuya J, Iwashita M, Manago K, Tokuda K, Yoshinag M, Kawano Y. Quantitative biofilm assay using a microtiter plate to screen for enteroaggregative Escherichia coli. Am J Tro Med Hyg. 2004;71:687e690. Wakimoto N, Nishi J, Sheikh J, Nataro J, Sarantuya J, Iwashita M, Manago K, Tokuda K, Yoshinag M, Kawano Y. Quantitative biofilm assay using a microtiter plate to screen for enteroaggregative Escherichia coli. Am J Tro Med Hyg. 2004;71:687e690.
30.
go back to reference Edward T. Essential Medical Genetics, 2011. John Wiley & Sons. p. 312. ISBN 1-118-29370-3. Archived from the original on 2016-04-17. Edward T. Essential Medical Genetics, 2011. John Wiley & Sons. p. 312. ISBN 1-118-29370-3. Archived from the original on 2016-04-17.
31.
go back to reference The canadian facts & figures on cystic fibrosis. Archived from the original on 2013-06-16. The canadian facts & figures on cystic fibrosis. Archived from the original on 2013-06-16.
32.
go back to reference "Genetic Carrier Testing". Cystic Fibrosis Foundation. 2007. Archived from the original on 2010-03-23. "Genetic Carrier Testing". Cystic Fibrosis Foundation. 2007. Archived from the original on 2010-03-23.
35.
go back to reference Farrell P, Joffe S, Foley L, Canny GJ, Mayne P, Rosenberg M. Diagnosis of cystic fibrosis in the Republic of Ireland: epidemiology and costs. Ir Med J 2007;100 (8): 557–560. PMID 17955689. Archived from the original on 2013-12-03. Farrell P, Joffe S, Foley L, Canny GJ, Mayne P, Rosenberg M. Diagnosis of cystic fibrosis in the Republic of Ireland: epidemiology and costs. Ir Med J 2007;100 (8): 557–560. PMID 17955689. Archived from the original on 2013-12-03.
36.
37.
go back to reference Panickar J, David T. Prevalence of emerging pathogens in a large paediatric CF centre. J Cyst Fibros. 2015;14:S68.CrossRef Panickar J, David T. Prevalence of emerging pathogens in a large paediatric CF centre. J Cyst Fibros. 2015;14:S68.CrossRef
40.
go back to reference Fernández-Olmos A, Morosini MI, Lamas A, García-Castillo M, García-García L, Cantón R, et al. Clinical and microbiological features of a cystic fibrosis patient chronically colonized with Pandoraea sputorum identified by combining 16S rRNA sequencing and matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol. 2012;50:1096–8. https://doi.org/10.1128/JCM.05730-11.PubMedPubMedCentralCrossRef Fernández-Olmos A, Morosini MI, Lamas A, García-Castillo M, García-García L, Cantón R, et al. Clinical and microbiological features of a cystic fibrosis patient chronically colonized with Pandoraea sputorum identified by combining 16S rRNA sequencing and matrix-assisted laser desorption ionization-time of flight mass spectrometry. J Clin Microbiol. 2012;50:1096–8. https://​doi.​org/​10.​1128/​JCM.​05730-11.PubMedPubMedCentralCrossRef
43.
go back to reference Jørgensen IM, Johansen HK, Frederiksen B, Pressler T, Hansen A, Vandamme P, Koch C. Epidemic spread of Pandoraea apista, a new pathogen causing severe lung disease in cystic fibrosis patients. Pediatr Pulmonol. 2003;36(5):439–46.PubMedCrossRef Jørgensen IM, Johansen HK, Frederiksen B, Pressler T, Hansen A, Vandamme P, Koch C. Epidemic spread of Pandoraea apista, a new pathogen causing severe lung disease in cystic fibrosis patients. Pediatr Pulmonol. 2003;36(5):439–46.PubMedCrossRef
45.
go back to reference Speert DP, Henry D, Vandamme P, Corey M, Mahenthiralingam E. Epidemiology of Burkholderia cepacia complex in patients with cystic fibrosis, Canada. Emerg Infect Dis. 2002;8(2):181.PubMedPubMedCentralCrossRef Speert DP, Henry D, Vandamme P, Corey M, Mahenthiralingam E. Epidemiology of Burkholderia cepacia complex in patients with cystic fibrosis, Canada. Emerg Infect Dis. 2002;8(2):181.PubMedPubMedCentralCrossRef
46.
go back to reference Caraher E, Collins J, Herbert G, Murphy PG, Gallagher CG, Crowe MJ, McClean S. Evaluation of in vitro virulence characteristics of the genus Pandoraea in lung epithelial cells. J Med Microbiol. 2008;57(1):15–20.PubMedCrossRef Caraher E, Collins J, Herbert G, Murphy PG, Gallagher CG, Crowe MJ, McClean S. Evaluation of in vitro virulence characteristics of the genus Pandoraea in lung epithelial cells. J Med Microbiol. 2008;57(1):15–20.PubMedCrossRef
47.
go back to reference Davies D, Parsek M, Pearson J, Iglewski B, Costerton J, Greenberg E. The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science. 1998;280:295–8.PubMedCrossRef Davies D, Parsek M, Pearson J, Iglewski B, Costerton J, Greenberg E. The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science. 1998;280:295–8.PubMedCrossRef
48.
go back to reference Costerton JW, Stewart PS, Greenberg EP. Bacterial biofilms: a common cause of persistent infections. Science. 1999;284:1318e1322.PubMedCrossRef Costerton JW, Stewart PS, Greenberg EP. Bacterial biofilms: a common cause of persistent infections. Science. 1999;284:1318e1322.PubMedCrossRef
Metadata
Title
Isolation and identification of Pandoraea spp. From bronchoalveolar lavage of cystic fibrosis patients in Iran
Authors
Mohammad Tabatabaei
Mahdi Dastbarsar
Mohammad Ashkan Moslehi
Publication date
01-12-2019
Publisher
BioMed Central
Published in
Italian Journal of Pediatrics / Issue 1/2019
Electronic ISSN: 1824-7288
DOI
https://doi.org/10.1186/s13052-019-0687-x

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