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Published in: BMC Oral Health 1/2019

Open Access 01-12-2019 | Respiratory Microbiota | Research article

Comparing dental plaque microbiome diversity of extrinsic black stain in the primary dentition using Illumina MiSeq sequencing technique

Authors: Lulu Chen, Qiong Zhang, Yan Wang, Keke Zhang, Jing Zou

Published in: BMC Oral Health | Issue 1/2019

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Abstract

Background

Extrinsic black stain (EBS) is characterized by discrete dark dots or lines on the tooth surface. The relationship between EBS and oral microbiota in children remains elusive. The aim of this study was to compare dental plaque microbiome in EBS children with that in EBS-free children in the primary dentition.

Methods

The Illumina MiSeq sequencing technique was utilized in the cross-sectional pilot study to investigate the diversity and composition of the supragingival plaque microbiota from 10 EBS-positive and 10 EBS-free children. The results were analysed with nonparametric Mann-Whitney U test, Pearson Chi-Square test, Fisher’s Exact test and one-way ANOVA tests.

Results

We identified 13 different phyla, 22 classes, 33 orders, 54 families, 105 genera, and 227 species from a total of 52,646 high-quality sequences. Between two groups, no statistical differences were observed in the estimators of community richness and diversity at 97% similarity, as well as in the Unweighted Unifrac principal co-ordinates analysis (PCoA). At the species level, higher level of relative abundance of Actinomyces naeslundii and lower level of relative abundance of a species belonging to Candidate_division_TM7 was observed in dental plaque of EBS-positive subjects, compared to dental plaque of EBS-free subjects (P < 0.05). This indicated that some species might be involved in the EBS process.

Conclusion

Changes in dental plaque microbiota is possibly relevant to the process of EBS in the primary dentition.
Appendix
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Literature
1.
go back to reference Watts A, Addy M. Tooth discolouration and staining: a review of the literature. Br Dent J. 2001;190(6):309–16.PubMedCrossRef Watts A, Addy M. Tooth discolouration and staining: a review of the literature. Br Dent J. 2001;190(6):309–16.PubMedCrossRef
2.
go back to reference Ronay V, Attin T. Black stain - a review. Oral Health Prev Dent. 2011;9(1):37–45.PubMed Ronay V, Attin T. Black stain - a review. Oral Health Prev Dent. 2011;9(1):37–45.PubMed
4.
go back to reference Gasparetto A, Conrado CA, Maciel SM, Miyamoto EY, Chicarelli M, Zanata RL. Prevalence of black tooth stains and dental caries in Brazilian schoolchildren. Braz Dent J. 2003;14(3):157–61.PubMedCrossRef Gasparetto A, Conrado CA, Maciel SM, Miyamoto EY, Chicarelli M, Zanata RL. Prevalence of black tooth stains and dental caries in Brazilian schoolchildren. Braz Dent J. 2003;14(3):157–61.PubMedCrossRef
6.
go back to reference Chen X, Zhan JY, Lu HX, Ye W, Zhang W, Yang WJ, et al. Factors associated with black tooth stain in Chinese preschool children. Clin Oral Investig. 2014;18(9):2059–66.PubMedCrossRef Chen X, Zhan JY, Lu HX, Ye W, Zhang W, Yang WJ, et al. Factors associated with black tooth stain in Chinese preschool children. Clin Oral Investig. 2014;18(9):2059–66.PubMedCrossRef
7.
go back to reference Addy M, Moran J, Griffiths A, Wills-Wood N. Extrinsic tooth discoloration by metals and chlorhexidine. I. Surface protein denaturation or dietary precipitation? Br Dent J. 1985;159(9):281–5.PubMedCrossRef Addy M, Moran J, Griffiths A, Wills-Wood N. Extrinsic tooth discoloration by metals and chlorhexidine. I. Surface protein denaturation or dietary precipitation? Br Dent J. 1985;159(9):281–5.PubMedCrossRef
8.
go back to reference Slots J. The microflora of black stain on human primary teeth. Scand J Dent Res. 1974;82(7):484–90.PubMed Slots J. The microflora of black stain on human primary teeth. Scand J Dent Res. 1974;82(7):484–90.PubMed
9.
go back to reference Saba C, Solidani M, Berlutti F, Vestri A, Ottolenghi L, Polimeni A. Black stains in the mixed dentition: a PCR microbiological study of the etiopathogenic bacteria. J Clin Pediatr Dent. 2006;30(3):219–24.PubMedCrossRef Saba C, Solidani M, Berlutti F, Vestri A, Ottolenghi L, Polimeni A. Black stains in the mixed dentition: a PCR microbiological study of the etiopathogenic bacteria. J Clin Pediatr Dent. 2006;30(3):219–24.PubMedCrossRef
10.
go back to reference Costa MT, Dorta ML, Ribeiro-Dias F, Pimenta FC. Biofilms of black tooth stains: PCR analysis reveals presence of Streptococcus mutans. Braz Dent J. 2012;23(5):555–8.PubMedCrossRef Costa MT, Dorta ML, Ribeiro-Dias F, Pimenta FC. Biofilms of black tooth stains: PCR analysis reveals presence of Streptococcus mutans. Braz Dent J. 2012;23(5):555–8.PubMedCrossRef
12.
go back to reference Amann RI, Ludwig W, Schleifer KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev. 1995;59(1):143–69.PubMedPubMedCentral Amann RI, Ludwig W, Schleifer KH. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev. 1995;59(1):143–69.PubMedPubMedCentral
15.
go back to reference Ravi RK, Walton K, Khosroheidari M. MiSeq: a next generation sequencing platform for genomic analysis. Methods Mol Biol. 1706;2018:223–32. Ravi RK, Walton K, Khosroheidari M. MiSeq: a next generation sequencing platform for genomic analysis. Methods Mol Biol. 1706;2018:223–32.
16.
go back to reference Dennis KL, Wang Y, Blatner NR, Wang S, Saadalla A, Trudeau E, et al. Adenomatous polyps are driven by microbe-instigated focal inflammation and are controlled by IL-10 producing T-cells. Cancer Res. 2013;73(19):5905–13.PubMedPubMedCentralCrossRef Dennis KL, Wang Y, Blatner NR, Wang S, Saadalla A, Trudeau E, et al. Adenomatous polyps are driven by microbe-instigated focal inflammation and are controlled by IL-10 producing T-cells. Cancer Res. 2013;73(19):5905–13.PubMedPubMedCentralCrossRef
17.
go back to reference Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011;27(16):2194–200.PubMedPubMedCentralCrossRef Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics. 2011;27(16):2194–200.PubMedPubMedCentralCrossRef
18.
go back to reference Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, et al. Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes. ISME J. 2013;7(7):1344–53.PubMedPubMedCentralCrossRef Amato KR, Yeoman CJ, Kent A, Righini N, Carbonero F, Estrada A, et al. Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes. ISME J. 2013;7(7):1344–53.PubMedPubMedCentralCrossRef
19.
go back to reference Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–6.CrossRefPubMedPubMedCentral Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7(5):335–6.CrossRefPubMedPubMedCentral
20.
go back to reference Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R. UniFrac: an effective distance metric for microbial community comparison. ISME J. 2011;5(2):169–72.PubMedCrossRef Lozupone C, Lladser ME, Knights D, Stombaugh J, Knight R. UniFrac: an effective distance metric for microbial community comparison. ISME J. 2011;5(2):169–72.PubMedCrossRef
21.
go back to reference Paster BJ, Olsen I, Aas JA, Dewhirst FE. The breadth of bacterial diversity in the human periodontal pocket and other oral sites. Periodontol 2000. 2006;42:80–7.PubMedCrossRef Paster BJ, Olsen I, Aas JA, Dewhirst FE. The breadth of bacterial diversity in the human periodontal pocket and other oral sites. Periodontol 2000. 2006;42:80–7.PubMedCrossRef
22.
go back to reference Heinrich-Weltzien R, Bartsch B, Eick S. Dental caries and microbiota in children with black stain and non-discoloured dental plaque. Caries Res. 2014;48(2):118–25.PubMedCrossRef Heinrich-Weltzien R, Bartsch B, Eick S. Dental caries and microbiota in children with black stain and non-discoloured dental plaque. Caries Res. 2014;48(2):118–25.PubMedCrossRef
23.
go back to reference Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq illumina sequencing platform. Appl Environ Microbiol. 2013;79(17):5112–20.PubMedPubMedCentralCrossRef Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq illumina sequencing platform. Appl Environ Microbiol. 2013;79(17):5112–20.PubMedPubMedCentralCrossRef
24.
25.
go back to reference Rheims H, Spröer C, Rainey FA, Stackebrandt E. Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology. 1996;142(10):2863–70.PubMedCrossRef Rheims H, Spröer C, Rainey FA, Stackebrandt E. Molecular biological evidence for the occurrence of uncultured members of the actinomycete line of descent in different environments and geographical locations. Microbiology. 1996;142(10):2863–70.PubMedCrossRef
26.
go back to reference Hugenholtz P, Tyson GW, Webb RI, Wagner AM, Blackall LL. Investigation of candidate division TM7, a recently recognized major lineage of the domain bacteria with no known pure-culture representatives. Appl Environ Microbiol. 2001;67(1):411–9.PubMedPubMedCentralCrossRef Hugenholtz P, Tyson GW, Webb RI, Wagner AM, Blackall LL. Investigation of candidate division TM7, a recently recognized major lineage of the domain bacteria with no known pure-culture representatives. Appl Environ Microbiol. 2001;67(1):411–9.PubMedPubMedCentralCrossRef
27.
go back to reference Soro V, Dutton LC, Sprague SV, Nobbs AH, Ireland AJ, Sandy JR, et al. Axenic culture of a candidate division TM7 bacterium from the human oral cavity and biofilm interactions with other oral bacteria. Appl Environ Microbiol. 2014;80(20):6480–9.PubMedPubMedCentralCrossRef Soro V, Dutton LC, Sprague SV, Nobbs AH, Ireland AJ, Sandy JR, et al. Axenic culture of a candidate division TM7 bacterium from the human oral cavity and biofilm interactions with other oral bacteria. Appl Environ Microbiol. 2014;80(20):6480–9.PubMedPubMedCentralCrossRef
28.
go back to reference Henssge U, Do T, Radford DR, Gilbert SC, Clark D, Beighton D. Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963. Int J Syst Evol Microbiol. 2009;59(3):509–16.PubMedPubMedCentralCrossRef Henssge U, Do T, Radford DR, Gilbert SC, Clark D, Beighton D. Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963. Int J Syst Evol Microbiol. 2009;59(3):509–16.PubMedPubMedCentralCrossRef
29.
go back to reference Sarkonen N, Könönen E, Summanen P, Könönen M, Jousimies-Somer H. Phenotypic identification of Actinomyces and related species isolated from human sources. J Clin Microbiol. 2001;39(11):3955–61.PubMedPubMedCentralCrossRef Sarkonen N, Könönen E, Summanen P, Könönen M, Jousimies-Somer H. Phenotypic identification of Actinomyces and related species isolated from human sources. J Clin Microbiol. 2001;39(11):3955–61.PubMedPubMedCentralCrossRef
30.
go back to reference Reid JS, Beeley JA, MacDonald DG. Investigations into black extrinsic tooth stain. J Dent Res. 1977;56(8):895–9.PubMedCrossRef Reid JS, Beeley JA, MacDonald DG. Investigations into black extrinsic tooth stain. J Dent Res. 1977;56(8):895–9.PubMedCrossRef
31.
go back to reference Theilade J. Development of bacterial plaque in the oral cavity. J Clin Periodontol. 1977;4(5):1–12.PubMedCrossRef Theilade J. Development of bacterial plaque in the oral cavity. J Clin Periodontol. 1977;4(5):1–12.PubMedCrossRef
Metadata
Title
Comparing dental plaque microbiome diversity of extrinsic black stain in the primary dentition using Illumina MiSeq sequencing technique
Authors
Lulu Chen
Qiong Zhang
Yan Wang
Keke Zhang
Jing Zou
Publication date
01-12-2019
Publisher
BioMed Central
Published in
BMC Oral Health / Issue 1/2019
Electronic ISSN: 1472-6831
DOI
https://doi.org/10.1186/s12903-019-0960-9

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