Skip to main content
Top
Published in: BMC Medical Genetics 1/2018

Open Access 01-12-2018 | Research article

A novel mutation in EYA1 in a Chinese family with Branchio-oto-renal syndrome

Authors: Yan-gong Wang, Shu-ping Sun, Yi-ling Qiu, Qing-he Xing, Wei Lu

Published in: BMC Medical Genetics | Issue 1/2018

Login to get access

Abstract

Background

Branchio-oto-renal (BOR) syndrome is a dominant autosomal disorder characterized by phenotypes such as hearing loss, branchial fistulae, preauricular pits, and renal abnormalities. EYA1, the human homolog of the Drosophila “eye absent” gene on chromosome 8q13.3, is recognized as one of the most important genes associated with BOR syndrome.

Methods

The proposita in this study was a 5-year-old Chinese girl with hearing loss, bilateral otitis media with effusion, microtia, facial hypoplasia, palatoschisis, and bilateral branchial cleft fistulae. The girl’s family members, except two who were deceased, agreed to undergo clinical examination. We collected blood samples from 10 family members, including six who were affected by the syndrome. Genomic DNA was extracted and subjected to Sanger sequencing. A minigene assay was performed to confirm whether splicing signals were altered. In addition, we performed western blotting to determine alterations in protein levels of the wild-type and mutant gene.

Results

Clinical tests showed that some of the family members met the criteria for BOR syndrome. The affected members harbored a novel heterozygous nonsense variation in exon 11 of EYA1, whereas no unaffected member carried the mutation at this position. Functional experiments did not detect abnormal splicing at the RNA level; however, western blotting showed that the mutated protein was truncated.

Conclusions

This study reports a novel mutation associated with BOR syndrome in a Chinese family. We highlight the usefulness of genetic testing in the diagnosis of BOR syndrome. Thus, we believe that this report would benefit clinicians in this field.
Appendix
Available only for authorised users
Literature
2.
go back to reference Chang EH, Menezes M, Meyer NC, Cucci RA, Vervoort VS, et al. Branchio-oto-renal syndrome: the mutation spectrum in EYA1 and its phenotypic consequences. Hum Mutat. 2004;23:582–9.CrossRefPubMed Chang EH, Menezes M, Meyer NC, Cucci RA, Vervoort VS, et al. Branchio-oto-renal syndrome: the mutation spectrum in EYA1 and its phenotypic consequences. Hum Mutat. 2004;23:582–9.CrossRefPubMed
3.
go back to reference Melnick M, Bixler D, Silk K, Yune H, Nance WE. Autosomal dominant branchiootorenal dysplasia. Birth Defects Orig Artic Ser. 1975;11:121–8.PubMed Melnick M, Bixler D, Silk K, Yune H, Nance WE. Autosomal dominant branchiootorenal dysplasia. Birth Defects Orig Artic Ser. 1975;11:121–8.PubMed
4.
go back to reference Fraser FC, Ling D, Clogg D, Nogrady B. Genetic aspects of the BOR syndrome--branchial fistulas, ear pits, hearing loss, and renal anomalies. Am J Med Genet. 1978;2:241–52.CrossRefPubMed Fraser FC, Ling D, Clogg D, Nogrady B. Genetic aspects of the BOR syndrome--branchial fistulas, ear pits, hearing loss, and renal anomalies. Am J Med Genet. 1978;2:241–52.CrossRefPubMed
5.
go back to reference Konig R, Fuchs S, Dukiet C. Branchio-oto-renal (BOR) syndrome: variable expressivity in a five-generation pedigree. Eur J Pediatr. 1994;153:446–50.CrossRefPubMed Konig R, Fuchs S, Dukiet C. Branchio-oto-renal (BOR) syndrome: variable expressivity in a five-generation pedigree. Eur J Pediatr. 1994;153:446–50.CrossRefPubMed
6.
go back to reference Heimler A, Lieber E. Branchio-oto-renal syndrome: reduced penetrance and variable expressivity in four generations of a large kindred. Am J Med Genet. 1986;25:15–27.CrossRefPubMed Heimler A, Lieber E. Branchio-oto-renal syndrome: reduced penetrance and variable expressivity in four generations of a large kindred. Am J Med Genet. 1986;25:15–27.CrossRefPubMed
7.
go back to reference Smith RJ, Coppage KB, Ankerstjerne JK, Capper DT, Kumar S, et al. Localization of the gene for branchiootorenal syndrome to chromosome 8q. Genomics. 1992;14:841–4.CrossRefPubMed Smith RJ, Coppage KB, Ankerstjerne JK, Capper DT, Kumar S, et al. Localization of the gene for branchiootorenal syndrome to chromosome 8q. Genomics. 1992;14:841–4.CrossRefPubMed
8.
go back to reference Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, et al. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in the eyes absent homologous region (eyaHR) of EYA1. Hum Mol Genet. 1997;6:2247–55.CrossRefPubMed Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, et al. Clustering of mutations responsible for branchio-oto-renal (BOR) syndrome in the eyes absent homologous region (eyaHR) of EYA1. Hum Mol Genet. 1997;6:2247–55.CrossRefPubMed
9.
go back to reference Bonini NM, Leiserson WM, Benzer S. The eyes absent gene: genetic control of cell survival and differentiation in the developing Drosophila eye. Cell. 1993;72:379–95.CrossRefPubMed Bonini NM, Leiserson WM, Benzer S. The eyes absent gene: genetic control of cell survival and differentiation in the developing Drosophila eye. Cell. 1993;72:379–95.CrossRefPubMed
10.
go back to reference Sajithlal G, Zou D, Silvius D, Xu PX. Eya 1 acts as a critical regulator for specifying the metanephric mesenchyme. Dev Biol. 2005;284:323–36.CrossRefPubMed Sajithlal G, Zou D, Silvius D, Xu PX. Eya 1 acts as a critical regulator for specifying the metanephric mesenchyme. Dev Biol. 2005;284:323–36.CrossRefPubMed
11.
go back to reference Morisada N, Nozu K, Iijima K. Branchio-oto-renal syndrome: comprehensive review based on nationwide surveillance in Japan. Pediatr Int. 2014;56:309–14.CrossRefPubMed Morisada N, Nozu K, Iijima K. Branchio-oto-renal syndrome: comprehensive review based on nationwide surveillance in Japan. Pediatr Int. 2014;56:309–14.CrossRefPubMed
12.
go back to reference Clarke JC, Honey EM, Bekker E, Snyman LC, Raymond RJ, et al. A novel nonsense mutation in the EYA1 gene associated with branchio-oto-renal/branchiootic syndrome in an Afrikaner kindred. Clin Genet. 2006;70:63–7.CrossRefPubMed Clarke JC, Honey EM, Bekker E, Snyman LC, Raymond RJ, et al. A novel nonsense mutation in the EYA1 gene associated with branchio-oto-renal/branchiootic syndrome in an Afrikaner kindred. Clin Genet. 2006;70:63–7.CrossRefPubMed
13.
go back to reference Kim SH, Shin JH, Yeo CK, Chang SH, Park SY, et al. Identification of a novel mutation in the EYA1 gene in a Korean family with branchio-oto-renal (BOR) syndrome. Int J Pediatr Otorhinolaryngol. 2005;69:1123–8.CrossRefPubMed Kim SH, Shin JH, Yeo CK, Chang SH, Park SY, et al. Identification of a novel mutation in the EYA1 gene in a Korean family with branchio-oto-renal (BOR) syndrome. Int J Pediatr Otorhinolaryngol. 2005;69:1123–8.CrossRefPubMed
14.
go back to reference Wang SH, Wu CC, Lu YC, Lin YH, Su YN, et al. Mutation screening of the EYA1, SIX1, and SIX5 genes in an East Asian cohort with branchio-oto-renal syndrome. Laryngoscope. 2012;122:1130–6.CrossRefPubMed Wang SH, Wu CC, Lu YC, Lin YH, Su YN, et al. Mutation screening of the EYA1, SIX1, and SIX5 genes in an East Asian cohort with branchio-oto-renal syndrome. Laryngoscope. 2012;122:1130–6.CrossRefPubMed
15.
go back to reference Lee KY, Kim S, Kim UK, Ki CS, Lee SH. Novel EYA1 mutation in a Korean branchio-oto-renal syndrome family. Int J Pediatr Otorhinolaryngol. 2007;71:169–74.CrossRefPubMed Lee KY, Kim S, Kim UK, Ki CS, Lee SH. Novel EYA1 mutation in a Korean branchio-oto-renal syndrome family. Int J Pediatr Otorhinolaryngol. 2007;71:169–74.CrossRefPubMed
16.
go back to reference Yashima T, Noguchi Y, Ishikawa K, Mizusawa H, Kitamura K. Mutation of the EYA1 gene in patients with branchio-oto syndrome. Acta Otolaryngol. 2003;123:279–82.CrossRefPubMed Yashima T, Noguchi Y, Ishikawa K, Mizusawa H, Kitamura K. Mutation of the EYA1 gene in patients with branchio-oto syndrome. Acta Otolaryngol. 2003;123:279–82.CrossRefPubMed
17.
go back to reference Schwarz JM, Cooper DN, Schuelke M, Seelow D. MutationTaster2: mutation prediction for the deep-sequencing age. Nat Methods. 2014;11:361–2.CrossRefPubMed Schwarz JM, Cooper DN, Schuelke M, Seelow D. MutationTaster2: mutation prediction for the deep-sequencing age. Nat Methods. 2014;11:361–2.CrossRefPubMed
18.
go back to reference Song MH, Kwon TJ, Kim HR, Jeon JH, Baek JI, et al. Mutational analysis of EYA1, SIX1 and SIX5 genes and strategies for management of hearing loss in patients with BOR/BO syndrome. PLoS One. 2013;8:e67236.CrossRefPubMedPubMedCentral Song MH, Kwon TJ, Kim HR, Jeon JH, Baek JI, et al. Mutational analysis of EYA1, SIX1 and SIX5 genes and strategies for management of hearing loss in patients with BOR/BO syndrome. PLoS One. 2013;8:e67236.CrossRefPubMedPubMedCentral
19.
go back to reference Castiglione A, Melchionda S, Carella M, Trevisi P, Bovo R, et al. EYA1-related disorders: two clinical cases and a literature review. Int J Pediatr Otorhinolaryngol. 2014;78:1201–10.CrossRefPubMed Castiglione A, Melchionda S, Carella M, Trevisi P, Bovo R, et al. EYA1-related disorders: two clinical cases and a literature review. Int J Pediatr Otorhinolaryngol. 2014;78:1201–10.CrossRefPubMed
20.
go back to reference Ruf RG, Xu PX, Silvius D, Otto EA, Beekmann F, et al. SIX1 mutations cause branchio-oto-renal syndrome by disruption of EYA1-SIX1-DNA complexes. Proc Natl Acad Sci U S A. 2004;101:8090–5.CrossRefPubMedPubMedCentral Ruf RG, Xu PX, Silvius D, Otto EA, Beekmann F, et al. SIX1 mutations cause branchio-oto-renal syndrome by disruption of EYA1-SIX1-DNA complexes. Proc Natl Acad Sci U S A. 2004;101:8090–5.CrossRefPubMedPubMedCentral
21.
go back to reference Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, et al. A human homologue of the Drosophila eyes absent gene underlies branchio-oto-renal (BOR) syndrome and identifies a novel gene family. Nat Genet. 1997;15:157–64.CrossRefPubMed Abdelhak S, Kalatzis V, Heilig R, Compain S, Samson D, et al. A human homologue of the Drosophila eyes absent gene underlies branchio-oto-renal (BOR) syndrome and identifies a novel gene family. Nat Genet. 1997;15:157–64.CrossRefPubMed
22.
go back to reference Sanggaard KM, Rendtorff ND, Kjaer KW, Eiberg H, Johnsen T, et al. Branchio-oto-renal syndrome: detection of EYA1 and SIX1 mutations in five out of six Danish families by combining linkage, MLPA and sequencing analyses. Eur J Hum Genet. 2007;15:1121–31.CrossRefPubMed Sanggaard KM, Rendtorff ND, Kjaer KW, Eiberg H, Johnsen T, et al. Branchio-oto-renal syndrome: detection of EYA1 and SIX1 mutations in five out of six Danish families by combining linkage, MLPA and sequencing analyses. Eur J Hum Genet. 2007;15:1121–31.CrossRefPubMed
23.
go back to reference Li X, Ohgi KA. Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. Nature. 2003;426:247-54. Li X, Ohgi KA. Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. Nature. 2003;426:247-54.
24.
go back to reference Azuma N, Hirakiyama A, Inoue T, Asaka A, Yamada M. Mutations of a human homologue of the Drosophila eyes absent gene (EYA1) detected in patients with congenital cataracts and ocular anterior segment anomalies. Hum Mol Genet. 2000;9:363–6.CrossRefPubMed Azuma N, Hirakiyama A, Inoue T, Asaka A, Yamada M. Mutations of a human homologue of the Drosophila eyes absent gene (EYA1) detected in patients with congenital cataracts and ocular anterior segment anomalies. Hum Mol Genet. 2000;9:363–6.CrossRefPubMed
25.
go back to reference Migliosi V, Flex E. Identification of five novel BOR mutations in human EYA1 gene associated with branchio-oto-renal syndrome by a DHPLC-based assay. Clin Genet. 2004;66:478-80. Migliosi V, Flex E. Identification of five novel BOR mutations in human EYA1 gene associated with branchio-oto-renal syndrome by a DHPLC-based assay. Clin Genet. 2004;66:478-80.
26.
go back to reference Ozaki H, Watanabe Y, Ikeda K, Kawakami K. Impaired interactions between mouse Eyal harboring mutations found in patients with branchio-oto-renal syndrome and Six, Dach, and G proteins. J Hum Genet. 2002;47:107–16.CrossRefPubMed Ozaki H, Watanabe Y, Ikeda K, Kawakami K. Impaired interactions between mouse Eyal harboring mutations found in patients with branchio-oto-renal syndrome and Six, Dach, and G proteins. J Hum Genet. 2002;47:107–16.CrossRefPubMed
27.
go back to reference Orten DJ, Fischer SM, Sorensen JL, Radhakrishna U, Cremers CW, et al. Branchio-oto-renal syndrome (BOR): novel mutations in the EYA1 gene, and a review of the mutational genetics of BOR. Hum Mutat. 2008;29:537–44.CrossRefPubMed Orten DJ, Fischer SM, Sorensen JL, Radhakrishna U, Cremers CW, et al. Branchio-oto-renal syndrome (BOR): novel mutations in the EYA1 gene, and a review of the mutational genetics of BOR. Hum Mutat. 2008;29:537–44.CrossRefPubMed
28.
go back to reference Xu PX, Adams J, Peters H, Brown MC, Heaney S, et al. Eya1-deficient mice lack ears and kidneys and show abnormal apoptosis of organ primordia. Nat Genet. 1999;23:113–7.CrossRefPubMed Xu PX, Adams J, Peters H, Brown MC, Heaney S, et al. Eya1-deficient mice lack ears and kidneys and show abnormal apoptosis of organ primordia. Nat Genet. 1999;23:113–7.CrossRefPubMed
29.
go back to reference Xu PX, Zheng W, Laclef C, Maire P, Maas RL, et al. Eya1 is required for the morphogenesis of mammalian thymus, parathyroid and thyroid. Development. 2002;129:3033–44.PubMedPubMedCentral Xu PX, Zheng W, Laclef C, Maire P, Maas RL, et al. Eya1 is required for the morphogenesis of mammalian thymus, parathyroid and thyroid. Development. 2002;129:3033–44.PubMedPubMedCentral
30.
go back to reference Buller C, Xu X, Marquis V, Schwanke R, Xu PX. Molecular effects of Eya1 domain mutations causing organ defects in BOR syndrome. Hum Mol Genet. 2001;10:2775–81.CrossRefPubMed Buller C, Xu X, Marquis V, Schwanke R, Xu PX. Molecular effects of Eya1 domain mutations causing organ defects in BOR syndrome. Hum Mol Genet. 2001;10:2775–81.CrossRefPubMed
31.
go back to reference Krug P, Moriniere V, Marlin S, Koubi V, Gabriel HD, et al. Mutation screening of the EYA1, SIX1, and SIX5 genes in a large cohort of patients harboring branchio-oto-renal syndrome calls into question the pathogenic role of SIX5 mutations. Hum Mutat. 2011;32:183–90.CrossRefPubMed Krug P, Moriniere V, Marlin S, Koubi V, Gabriel HD, et al. Mutation screening of the EYA1, SIX1, and SIX5 genes in a large cohort of patients harboring branchio-oto-renal syndrome calls into question the pathogenic role of SIX5 mutations. Hum Mutat. 2011;32:183–90.CrossRefPubMed
32.
go back to reference Moody SA, Neilson KM, Kenyon KL, Alfandari D, Pignoni F. Using Xenopus to discover new genes involved in branchiootorenal spectrum disorders. Comp Biochem Physiol C Toxicol Pharmacol. 2015;178:16–24.CrossRefPubMedPubMedCentral Moody SA, Neilson KM, Kenyon KL, Alfandari D, Pignoni F. Using Xenopus to discover new genes involved in branchiootorenal spectrum disorders. Comp Biochem Physiol C Toxicol Pharmacol. 2015;178:16–24.CrossRefPubMedPubMedCentral
33.
go back to reference Riddiford N, Schlosser G. Dissecting the pre-placodal transcriptome to reveal presumptive direct targets of Six1 and Eya1 in cranial placodes. eLife. 2016;5:e17666.CrossRefPubMedPubMedCentral Riddiford N, Schlosser G. Dissecting the pre-placodal transcriptome to reveal presumptive direct targets of Six1 and Eya1 in cranial placodes. eLife. 2016;5:e17666.CrossRefPubMedPubMedCentral
Metadata
Title
A novel mutation in EYA1 in a Chinese family with Branchio-oto-renal syndrome
Authors
Yan-gong Wang
Shu-ping Sun
Yi-ling Qiu
Qing-he Xing
Wei Lu
Publication date
01-12-2018
Publisher
BioMed Central
Published in
BMC Medical Genetics / Issue 1/2018
Electronic ISSN: 1471-2350
DOI
https://doi.org/10.1186/s12881-018-0653-2

Other articles of this Issue 1/2018

BMC Medical Genetics 1/2018 Go to the issue