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Published in: Molecular Autism 1/2014

Open Access 01-12-2014 | Research

Protein signatures of oxidative stress response in a patient specific cell line model for autism

Authors: Andreas G Chiocchetti, Denise Haslinger, Maximilian Boesch, Thomas Karl, Stefan Wiemann, Christine M Freitag, Fritz Poustka, Burghardt Scheibe, Johann W Bauer, Helmut Hintner, Michael Breitenbach, Josef Kellermann, Friedrich Lottspeich, Sabine M Klauck, Lore Breitenbach-Koller

Published in: Molecular Autism | Issue 1/2014

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Abstract

Background

Known genetic variants can account for 10% to 20% of all cases with autism spectrum disorders (ASD). Overlapping cellular pathomechanisms common to neurons of the central nervous system (CNS) and in tissues of peripheral organs, such as immune dysregulation, oxidative stress and dysfunctions in mitochondrial and protein synthesis metabolism, were suggested to support the wide spectrum of ASD on unifying disease phenotype. Here, we studied in patient-derived lymphoblastoid cell lines (LCLs) how an ASD-specific mutation in ribosomal protein RPL10 (RPL10[H213Q]) generates a distinct protein signature. We compared the RPL10[H213Q] expression pattern to expression patterns derived from unrelated ASD patients without RPL10[H213Q] mutation. In addition, a yeast rpl10 deficiency model served in a proof-of-principle study to test for alterations in protein patterns in response to oxidative stress.

Methods

Protein extracts of LCLs from patients, relatives and controls, as well as diploid yeast cells hemizygous for rpl10, were subjected to two-dimensional gel electrophoresis and differentially regulated spots were identified by mass spectrometry. Subsequently, Gene Ontology database (GO)-term enrichment and network analysis was performed to map the identified proteins into cellular pathways.

Results

The protein signature generated by RPL10[H213Q] is a functionally related subset of the ASD-specific protein signature, sharing redox-sensitive elements in energy-, protein- and redox-metabolism. In yeast, rpl10 deficiency generates a specific protein signature, harboring components of pathways identified in both the RPL10[H213Q] subjects’ and the ASD patients’ set. Importantly, the rpl10 deficiency signature is a subset of the signature resulting from response of wild-type yeast to oxidative stress.

Conclusions

Redox-sensitive protein signatures mapping into cellular pathways with pathophysiology in ASD have been identified in both LCLs carrying the ASD-specific mutation RPL10[H213Q] and LCLs from ASD patients without this mutation. At pathway levels, this redox-sensitive protein signature has also been identified in a yeast rpl10 deficiency and an oxidative stress model. These observations point to a common molecular pathomechanism in ASD, characterized in our study by dysregulation of redox balance. Importantly, this can be triggered by the known ASD-RPL10[H213Q] mutation or by yet unknown mutations of the ASD cohort that act upstream of RPL10 in differential expression of redox-sensitive proteins.
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Literature
1.
2.
go back to reference World Health Organization: International Classification of Mental and Behavioral Disorders. Clinical Descriptions and Diagnostic Guidelines. 1992, Geneva: World Health Organization, 10 World Health Organization: International Classification of Mental and Behavioral Disorders. Clinical Descriptions and Diagnostic Guidelines. 1992, Geneva: World Health Organization, 10
3.
go back to reference Constantino JN, Todorov A, Hilton C, Law P, Zhang Y, Molloy E, Fitzgerald R, Geschwind D: Autism recurrence in half siblings: strong support for genetic mechanisms of transmission in ASD. Mol Psychiatry. 2013, 18: 137-138. 10.1038/mp.2012.9.CrossRefPubMed Constantino JN, Todorov A, Hilton C, Law P, Zhang Y, Molloy E, Fitzgerald R, Geschwind D: Autism recurrence in half siblings: strong support for genetic mechanisms of transmission in ASD. Mol Psychiatry. 2013, 18: 137-138. 10.1038/mp.2012.9.CrossRefPubMed
4.
go back to reference Hallmayer J, Cleveland S, Torres A, Phillips J, Cohen B, Torigoe T, Miller J, Fedele A, Collins J, Smith K, Lotspeich L, Croen LA, Ozonoff S, LaJonchere C, Grether JK, Risch N: Genetic heritability and shared environmental factors among twin pairs with autism. Arch Gen Psychiatry. 2011, 68: 1095-1102. 10.1001/archgenpsychiatry.2011.76.PubMedCentralCrossRefPubMed Hallmayer J, Cleveland S, Torres A, Phillips J, Cohen B, Torigoe T, Miller J, Fedele A, Collins J, Smith K, Lotspeich L, Croen LA, Ozonoff S, LaJonchere C, Grether JK, Risch N: Genetic heritability and shared environmental factors among twin pairs with autism. Arch Gen Psychiatry. 2011, 68: 1095-1102. 10.1001/archgenpsychiatry.2011.76.PubMedCentralCrossRefPubMed
5.
go back to reference Lichtenstein P, Carlström E, Råstam M, Gillberg C, Anckarsäter H: The genetics of autism spectrum disorders and related neuropsychiatric disorders in childhood. Am J Psychiatry. 2010, 167: 1357-1363. 10.1176/appi.ajp.2010.10020223.CrossRefPubMed Lichtenstein P, Carlström E, Råstam M, Gillberg C, Anckarsäter H: The genetics of autism spectrum disorders and related neuropsychiatric disorders in childhood. Am J Psychiatry. 2010, 167: 1357-1363. 10.1176/appi.ajp.2010.10020223.CrossRefPubMed
6.
go back to reference Anney R, Klei L, Pinto D, Almeida J, Bacchelli E, Baird G, Bolshakova N, Bolte S, Bolton PF, Bourgeron T, Brennan S, Brian J, Casey J, Conroy J, Correia C, Corsello C, Crawford EL, Jonge M, Delorme R, Duketis E, Duque F, Estes A, Farrar P, Fernandez BA, Folstein SE, Fombonne E, Gilbert J, Gillberg C, Glessner JT, Green A: Individual common variants exert weak effects on the risk for autism spectrum disorderspi. Hum Mol Genet. 2012, 21: 4781-4792. 10.1093/hmg/dds301.PubMedCentralCrossRefPubMed Anney R, Klei L, Pinto D, Almeida J, Bacchelli E, Baird G, Bolshakova N, Bolte S, Bolton PF, Bourgeron T, Brennan S, Brian J, Casey J, Conroy J, Correia C, Corsello C, Crawford EL, Jonge M, Delorme R, Duketis E, Duque F, Estes A, Farrar P, Fernandez BA, Folstein SE, Fombonne E, Gilbert J, Gillberg C, Glessner JT, Green A: Individual common variants exert weak effects on the risk for autism spectrum disorderspi. Hum Mol Genet. 2012, 21: 4781-4792. 10.1093/hmg/dds301.PubMedCentralCrossRefPubMed
7.
go back to reference Devlin B, Scherer SW: Genetic architecture in autism spectrum disorder. Curr Opin Genet Dev. 2012, 22: 229-237. 10.1016/j.gde.2012.03.002.CrossRefPubMed Devlin B, Scherer SW: Genetic architecture in autism spectrum disorder. Curr Opin Genet Dev. 2012, 22: 229-237. 10.1016/j.gde.2012.03.002.CrossRefPubMed
8.
9.
go back to reference Freitag CM, Staal W, Klauck SM, Duketis E, Waltes R: Genetics of autistic disorders: review and clinical implications. Eur Child Adolesc Psychiatry. 2010, 19: 169-178. 10.1007/s00787-009-0076-x.PubMedCentralCrossRefPubMed Freitag CM, Staal W, Klauck SM, Duketis E, Waltes R: Genetics of autistic disorders: review and clinical implications. Eur Child Adolesc Psychiatry. 2010, 19: 169-178. 10.1007/s00787-009-0076-x.PubMedCentralCrossRefPubMed
10.
11.
go back to reference Banerjee-Basu S, Packer A: SFARI Gene: an evolving database for the autism research community. Dis Model Mech. 2010, 3: 133-135. 10.1242/dmm.005439.CrossRefPubMed Banerjee-Basu S, Packer A: SFARI Gene: an evolving database for the autism research community. Dis Model Mech. 2010, 3: 133-135. 10.1242/dmm.005439.CrossRefPubMed
12.
go back to reference Anney RJ, Kenny EM, O’Dushlaine C, Yaspan BL, Parkhomenka E, Buxbaum JD, Sutcliffe J, Gill M, Gallagher L: Gene-ontology enrichment analysis in two independent family-based samples highlights biologically plausible processes for autism spectrum disorders. Eur J Hum Genet. 2011, 19: 1082-1089. 10.1038/ejhg.2011.75.PubMedCentralCrossRefPubMed Anney RJ, Kenny EM, O’Dushlaine C, Yaspan BL, Parkhomenka E, Buxbaum JD, Sutcliffe J, Gill M, Gallagher L: Gene-ontology enrichment analysis in two independent family-based samples highlights biologically plausible processes for autism spectrum disorders. Eur J Hum Genet. 2011, 19: 1082-1089. 10.1038/ejhg.2011.75.PubMedCentralCrossRefPubMed
13.
go back to reference Van der Zwaag B, Franke L, Poot M, Hochstenbach R, Spierenburg HA, Vorstman JA, Van Daalen E, Jonge MV, De Verbeek NE, Brilstra EH, Van’t Slot R, Ophoff RA, Van Es MA, Blauw HM, Veldink JH, Buizer-Voskamp JE, Beemer FA, van den Berg LH, Wijmenga C, Van Amstel HKP, Van Engeland H, Burbach JPH, Staal WG: Gene-network analysis identifies susceptibility genes related to glycobiology in autism. PLoS One. 2009, 4: e5324-10.1371/journal.pone.0005324.PubMedCentralCrossRefPubMed Van der Zwaag B, Franke L, Poot M, Hochstenbach R, Spierenburg HA, Vorstman JA, Van Daalen E, Jonge MV, De Verbeek NE, Brilstra EH, Van’t Slot R, Ophoff RA, Van Es MA, Blauw HM, Veldink JH, Buizer-Voskamp JE, Beemer FA, van den Berg LH, Wijmenga C, Van Amstel HKP, Van Engeland H, Burbach JPH, Staal WG: Gene-network analysis identifies susceptibility genes related to glycobiology in autism. PLoS One. 2009, 4: e5324-10.1371/journal.pone.0005324.PubMedCentralCrossRefPubMed
14.
go back to reference Pinto D, Pagnamenta AT, Klei L, Anney R, Merico D, Regan R, Conroy J, Magalhaes TR, Correia C, Abrahams BS, Almeida J, Bacchelli E, Bader GD, Bailey AJ, Baird G, Battaglia A, Berney T, Bolshakova N, Bölte S, Bolton PF, Bourgeron T, Brennan S, Brian J, Bryson SE, Carson AR, Casallo G, Casey J, Chung BH, Cochrane L, Corsello C: Functional impact of global rare copy number variation in autism spectrum disorders. Nature. 2010, 466: 368-372. 10.1038/nature09146.PubMedCentralCrossRefPubMed Pinto D, Pagnamenta AT, Klei L, Anney R, Merico D, Regan R, Conroy J, Magalhaes TR, Correia C, Abrahams BS, Almeida J, Bacchelli E, Bader GD, Bailey AJ, Baird G, Battaglia A, Berney T, Bolshakova N, Bölte S, Bolton PF, Bourgeron T, Brennan S, Brian J, Bryson SE, Carson AR, Casallo G, Casey J, Chung BH, Cochrane L, Corsello C: Functional impact of global rare copy number variation in autism spectrum disorders. Nature. 2010, 466: 368-372. 10.1038/nature09146.PubMedCentralCrossRefPubMed
15.
go back to reference Frustaci A, Neri M, Cesario A, Adams JB, Domenici E, Dalla Bernardina B, Bonassi S: Oxidative stress-related biomarkers in autism: systematic review and meta-analyses. Free Radic Biol Med. 2012, 52: 2128-2141. 10.1016/j.freeradbiomed.2012.03.011.CrossRefPubMed Frustaci A, Neri M, Cesario A, Adams JB, Domenici E, Dalla Bernardina B, Bonassi S: Oxidative stress-related biomarkers in autism: systematic review and meta-analyses. Free Radic Biol Med. 2012, 52: 2128-2141. 10.1016/j.freeradbiomed.2012.03.011.CrossRefPubMed
16.
17.
go back to reference Kou Y, Betancur C, Xu H, Buxbaum JD, Ma’ayan A: Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability. Am J Med Genet C: Semin Med Genet. 2012, 160: 130-142.CrossRef Kou Y, Betancur C, Xu H, Buxbaum JD, Ma’ayan A: Network- and attribute-based classifiers can prioritize genes and pathways for autism spectrum disorders and intellectual disability. Am J Med Genet C: Semin Med Genet. 2012, 160: 130-142.CrossRef
18.
go back to reference Klauck SM, Felder B, Kolb-Kokocinski A, Schuster C, Chiocchetti A, Schupp I, Wellenreuther R, Schmötzer G, Poustka F, Breitenbach-Koller L, Poustka A: Mutations in the ribosomal protein gene RPL10 suggest a novel modulating disease mechanism for autism. Mol Psychiatry. 2006, 11: 1073-1084. 10.1038/sj.mp.4001883.CrossRefPubMed Klauck SM, Felder B, Kolb-Kokocinski A, Schuster C, Chiocchetti A, Schupp I, Wellenreuther R, Schmötzer G, Poustka F, Breitenbach-Koller L, Poustka A: Mutations in the ribosomal protein gene RPL10 suggest a novel modulating disease mechanism for autism. Mol Psychiatry. 2006, 11: 1073-1084. 10.1038/sj.mp.4001883.CrossRefPubMed
19.
go back to reference Chiocchetti A, Pakalapati G, Duketis E, Wiemann S, Poustka A, Poustka F, Klauck SM: Mutation and expression analyses of the ribosomal protein gene RPL10 in an extended German sample of patients with autism spectrum disorder. Am J Med Genet A. 2011, 155: 1472-1475. 10.1002/ajmg.a.33977.CrossRef Chiocchetti A, Pakalapati G, Duketis E, Wiemann S, Poustka A, Poustka F, Klauck SM: Mutation and expression analyses of the ribosomal protein gene RPL10 in an extended German sample of patients with autism spectrum disorder. Am J Med Genet A. 2011, 155: 1472-1475. 10.1002/ajmg.a.33977.CrossRef
20.
go back to reference Gong X, Delorme R, Fauchereau F, Durand CM, Chaste P, Betancur C, Goubran-Botros H, Nygren G, Anckarsäter H, Rastam M, Gillberg IC, Kopp S, Mouren-Simeoni MC, Gillberg C, Leboyer M, Bourgeron T: An investigation of ribosomal protein L10 gene in autism spectrum disorders. BMC Med Genet. 2009, 10: 7-PubMedCentralCrossRefPubMed Gong X, Delorme R, Fauchereau F, Durand CM, Chaste P, Betancur C, Goubran-Botros H, Nygren G, Anckarsäter H, Rastam M, Gillberg IC, Kopp S, Mouren-Simeoni MC, Gillberg C, Leboyer M, Bourgeron T: An investigation of ribosomal protein L10 gene in autism spectrum disorders. BMC Med Genet. 2009, 10: 7-PubMedCentralCrossRefPubMed
21.
go back to reference Piton A, Gauthier J, Hamdan FF, Lafrenière RG, Yang Y, Henrion E, Laurent S, Noreau A, Thibodeau P, Karemera L, Spiegelman D, Kuku F, Duguay J, Destroismaisons L, Jolivet P, Côté M, Lachapelle K, Diallo O, Raymond A, Marineau C, Champagne N, Xiong L, Gaspar C, Rivière J, Tarabeux J, Cossette P, Krebs M, Rapoport JL, Addington A, Delisi LE: Systematic resequencing of X-chromosome synaptic genes in autism spectrum disorder and schizophrenia. Mol Psychiatry. 2011, 16: 867-880. 10.1038/mp.2010.54.PubMedCentralCrossRefPubMed Piton A, Gauthier J, Hamdan FF, Lafrenière RG, Yang Y, Henrion E, Laurent S, Noreau A, Thibodeau P, Karemera L, Spiegelman D, Kuku F, Duguay J, Destroismaisons L, Jolivet P, Côté M, Lachapelle K, Diallo O, Raymond A, Marineau C, Champagne N, Xiong L, Gaspar C, Rivière J, Tarabeux J, Cossette P, Krebs M, Rapoport JL, Addington A, Delisi LE: Systematic resequencing of X-chromosome synaptic genes in autism spectrum disorder and schizophrenia. Mol Psychiatry. 2011, 16: 867-880. 10.1038/mp.2010.54.PubMedCentralCrossRefPubMed
22.
go back to reference Cortazzo P, Cerveñansky C, Marín M, Reiss C, Ehrlich R, Deana A: Silent mutations affect in vivo protein folding in Escherichia coli. Biochem Biophys Res Commun. 2002, 293: 537-541. 10.1016/S0006-291X(02)00226-7.CrossRefPubMed Cortazzo P, Cerveñansky C, Marín M, Reiss C, Ehrlich R, Deana A: Silent mutations affect in vivo protein folding in Escherichia coli. Biochem Biophys Res Commun. 2002, 293: 537-541. 10.1016/S0006-291X(02)00226-7.CrossRefPubMed
23.
go back to reference Lazrak A, Fu L, Bali V, Bartoszewski R, Rab A, Havasi V, Keiles S, Kappes J, Kumar R, Lefkowitz E, Sorscher EJ, Matalon S, Collawn JF, Bebok Z: The silent codon change I507-ATC-ATT contributes to the severity of the ΔF508 CFTR channel dysfunction. FASEB J. 2013, 27: 4630-4645. 10.1096/fj.13-227330.PubMedCentralCrossRefPubMed Lazrak A, Fu L, Bali V, Bartoszewski R, Rab A, Havasi V, Keiles S, Kappes J, Kumar R, Lefkowitz E, Sorscher EJ, Matalon S, Collawn JF, Bebok Z: The silent codon change I507-ATC-ATT contributes to the severity of the ΔF508 CFTR channel dysfunction. FASEB J. 2013, 27: 4630-4645. 10.1096/fj.13-227330.PubMedCentralCrossRefPubMed
24.
go back to reference Pachler K, Karl T, Kolmann K, Mehlmer N, Eder M, Loeffler M, Oender K, Hochleitner EO, Lottspeich F, Bresgen N, Richter K, Breitenbach M, Koller L: Functional interaction in establishment of ribosomal integrity between small subunit protein rpS6 and translational regulator rpL10/Grc5p. FEMS Yeast Res. 2004, 5: 271-280. 10.1016/j.femsyr.2004.07.009.CrossRefPubMed Pachler K, Karl T, Kolmann K, Mehlmer N, Eder M, Loeffler M, Oender K, Hochleitner EO, Lottspeich F, Bresgen N, Richter K, Breitenbach M, Koller L: Functional interaction in establishment of ribosomal integrity between small subunit protein rpS6 and translational regulator rpL10/Grc5p. FEMS Yeast Res. 2004, 5: 271-280. 10.1016/j.femsyr.2004.07.009.CrossRefPubMed
25.
go back to reference Oender K, Loeffler M, Doppler E, Eder M, Lach S, Heinrich F, Karl T, Moesl R, Hundsberger H, Klade T, Eckl P, Dickinson JR, Breitenbach M, Koller L: Translational regulator RpL10p/Grc5p interacts physically and functionally with Sed1p, a dynamic component of the yeast cell surface. Yeast. 2003, 20: 281-294. 10.1002/yea.963.CrossRefPubMed Oender K, Loeffler M, Doppler E, Eder M, Lach S, Heinrich F, Karl T, Moesl R, Hundsberger H, Klade T, Eckl P, Dickinson JR, Breitenbach M, Koller L: Translational regulator RpL10p/Grc5p interacts physically and functionally with Sed1p, a dynamic component of the yeast cell surface. Yeast. 2003, 20: 281-294. 10.1002/yea.963.CrossRefPubMed
26.
go back to reference Petrov AN, Meskauskas A, Roshwalb SC, Dinman JD: Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit. Nucleic Acids Res. 2008, 36: 6187-6198. 10.1093/nar/gkn643.PubMedCentralCrossRefPubMed Petrov AN, Meskauskas A, Roshwalb SC, Dinman JD: Yeast ribosomal protein L10 helps coordinate tRNA movement through the large subunit. Nucleic Acids Res. 2008, 36: 6187-6198. 10.1093/nar/gkn643.PubMedCentralCrossRefPubMed
27.
go back to reference Bauer JW, Brandl C, Haubenreisser O, Wimmer B, Weber M, Karl T, Klausegger A, Breitenbach M, Hintner H, von der Haar T, Tuite MF, Breitenbach-Koller L: Specialized yeast ribosomes: a customized tool for selective mRNA translation. PLoS One. 2013, 8: e67609-10.1371/journal.pone.0067609.PubMedCentralCrossRefPubMed Bauer JW, Brandl C, Haubenreisser O, Wimmer B, Weber M, Karl T, Klausegger A, Breitenbach M, Hintner H, von der Haar T, Tuite MF, Breitenbach-Koller L: Specialized yeast ribosomes: a customized tool for selective mRNA translation. PLoS One. 2013, 8: e67609-10.1371/journal.pone.0067609.PubMedCentralCrossRefPubMed
28.
go back to reference Levy D, Ronemus M, Yamrom B, Lee Y, Leotta A, Kendall J, Marks S, Lakshmi B, Pai D, Ye K, Buja A, Krieger A, Yoon S, Troge J, Rodgers L, Iossifov I, Wigler M: Rare de novo and transmitted copy-number variation in autistic spectrum disorders. Neuron. 2011, 70: 886-897. 10.1016/j.neuron.2011.05.015.CrossRefPubMed Levy D, Ronemus M, Yamrom B, Lee Y, Leotta A, Kendall J, Marks S, Lakshmi B, Pai D, Ye K, Buja A, Krieger A, Yoon S, Troge J, Rodgers L, Iossifov I, Wigler M: Rare de novo and transmitted copy-number variation in autistic spectrum disorders. Neuron. 2011, 70: 886-897. 10.1016/j.neuron.2011.05.015.CrossRefPubMed
29.
go back to reference De Keersmaecker K, Atak ZK, Li N, Vicente C, Patchett S, Girardi T, Gianfelici V, Geerdens E, Clappier E, Porcu M, Lahortiga I, Lucà R, Yan J, Hulselmans G, Vranckx H, Vandepoel R, Sweron B, Jacobs K, Mentens N, Wlodarska I, Cauwelier B, Cloos J, Soulier J, Uyttebroeck A, Bagni C, Hassan BA, Vandenberghe P, Johnson AW, Aerts S, Cools J: Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia. Nat Genet. 2013, 45: 186-190.CrossRefPubMed De Keersmaecker K, Atak ZK, Li N, Vicente C, Patchett S, Girardi T, Gianfelici V, Geerdens E, Clappier E, Porcu M, Lahortiga I, Lucà R, Yan J, Hulselmans G, Vranckx H, Vandepoel R, Sweron B, Jacobs K, Mentens N, Wlodarska I, Cauwelier B, Cloos J, Soulier J, Uyttebroeck A, Bagni C, Hassan BA, Vandenberghe P, Johnson AW, Aerts S, Cools J: Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia. Nat Genet. 2013, 45: 186-190.CrossRefPubMed
30.
go back to reference Baierlein C, Hackmann A, Gross T, Henker L, Hinz F, Krebber H: Monosome formation during translation initiation requires the SR protein Npl3. Mol Cell Biol. 2013, 5: 271-280. Baierlein C, Hackmann A, Gross T, Henker L, Hinz F, Krebber H: Monosome formation during translation initiation requires the SR protein Npl3. Mol Cell Biol. 2013, 5: 271-280.
31.
go back to reference Fuge EK, Braun EL, Werner-Washburne M: Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. J Bacteriol. 1994, 176: 5802-5813.PubMedCentralPubMed Fuge EK, Braun EL, Werner-Washburne M: Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. J Bacteriol. 1994, 176: 5802-5813.PubMedCentralPubMed
32.
go back to reference Grant CM: Regulation of translation by hydrogen peroxide. Antioxid Redox Signal. 2011, 15: 191-203. 10.1089/ars.2010.3699.CrossRefPubMed Grant CM: Regulation of translation by hydrogen peroxide. Antioxid Redox Signal. 2011, 15: 191-203. 10.1089/ars.2010.3699.CrossRefPubMed
33.
go back to reference Gross C, Bassell GJ: Excess protein synthesis in FXS patient lymphoblastoid cells can be rescued with a p110β-selective inhibitor. Mol Med. 2012, 18: 336-345.PubMedCentralCrossRefPubMed Gross C, Bassell GJ: Excess protein synthesis in FXS patient lymphoblastoid cells can be rescued with a p110β-selective inhibitor. Mol Med. 2012, 18: 336-345.PubMedCentralCrossRefPubMed
34.
go back to reference Rossignol DA, Frye RE: A review of research trends in physiological abnormalities in autism spectrum disorders: immune dysregulation, inflammation, oxidative stress, mitochondrial dysfunction and environmental toxicant exposures. Mol Psychiatry. 2012, 17: 389-401. 10.1038/mp.2011.165.PubMedCentralCrossRefPubMed Rossignol DA, Frye RE: A review of research trends in physiological abnormalities in autism spectrum disorders: immune dysregulation, inflammation, oxidative stress, mitochondrial dysfunction and environmental toxicant exposures. Mol Psychiatry. 2012, 17: 389-401. 10.1038/mp.2011.165.PubMedCentralCrossRefPubMed
35.
go back to reference Neitzel H: A routine method for the establishment of permanent growing lymphoblastoid cell lines. Hum Genet. 1986, 73: 320-326. 10.1007/BF00279094.CrossRefPubMed Neitzel H: A routine method for the establishment of permanent growing lymphoblastoid cell lines. Hum Genet. 1986, 73: 320-326. 10.1007/BF00279094.CrossRefPubMed
36.
go back to reference Laimer M, Kocher T, Chiocchetti A, Trost A, Lottspeich F, Richter K, Hintner H, Bauer JW, Onder K: Proteomic profiling reveals a catalogue of new candidate proteins for human skin aging. Exp Dermatol. 2010, 19: 912-918. 10.1111/j.1600-0625.2010.01144.x.CrossRefPubMed Laimer M, Kocher T, Chiocchetti A, Trost A, Lottspeich F, Richter K, Hintner H, Bauer JW, Onder K: Proteomic profiling reveals a catalogue of new candidate proteins for human skin aging. Exp Dermatol. 2010, 19: 912-918. 10.1111/j.1600-0625.2010.01144.x.CrossRefPubMed
37.
go back to reference Candiano G, Bruschi M, Musante L, Santucci L, Ghiggeri GM, Carnemolla B, Orecchia P, Zardi L, Righetti PG: Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis. 2004, 25: 1327-1333. 10.1002/elps.200305844.CrossRefPubMed Candiano G, Bruschi M, Musante L, Santucci L, Ghiggeri GM, Carnemolla B, Orecchia P, Zardi L, Righetti PG: Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis. Electrophoresis. 2004, 25: 1327-1333. 10.1002/elps.200305844.CrossRefPubMed
38.
go back to reference Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ: Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007, 2: 2366-2382. 10.1038/nprot.2007.324.PubMedCentralCrossRefPubMed Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ: Integration of biological networks and gene expression data using Cytoscape. Nat Protoc. 2007, 2: 2366-2382. 10.1038/nprot.2007.324.PubMedCentralCrossRefPubMed
39.
go back to reference Montojo J, Zuberi K, Rodriguez H, Kazi F, Wright G, Donaldson SL, Morris Q, Bader GD: GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics. 2010, 26: 2927-2928. 10.1093/bioinformatics/btq562.PubMedCentralCrossRefPubMed Montojo J, Zuberi K, Rodriguez H, Kazi F, Wright G, Donaldson SL, Morris Q, Bader GD: GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop. Bioinformatics. 2010, 26: 2927-2928. 10.1093/bioinformatics/btq562.PubMedCentralCrossRefPubMed
40.
go back to reference Maere S, Heymans K, Kuiper M: BiNGO. A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics. 2005, 21: 3448-3449. 10.1093/bioinformatics/bti551.CrossRefPubMed Maere S, Heymans K, Kuiper M: BiNGO. A Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics. 2005, 21: 3448-3449. 10.1093/bioinformatics/bti551.CrossRefPubMed
43.
go back to reference Plagnol V, Uz E, Wallace C, Stevens H, Clayton D, Ozcelik T, Todd JA: Extreme clonality in lymphoblastoid cell lines with implications for allele specific expression analyses. PLoS One. 2008, 3: e2966-10.1371/journal.pone.0002966.PubMedCentralCrossRefPubMed Plagnol V, Uz E, Wallace C, Stevens H, Clayton D, Ozcelik T, Todd JA: Extreme clonality in lymphoblastoid cell lines with implications for allele specific expression analyses. PLoS One. 2008, 3: e2966-10.1371/journal.pone.0002966.PubMedCentralCrossRefPubMed
45.
go back to reference Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M: Global quantification of mammalian gene expression control. Nature. 2011, 473: 337-342. 10.1038/nature10098.CrossRefPubMed Schwanhäusser B, Busse D, Li N, Dittmar G, Schuchhardt J, Wolf J, Chen W, Selbach M: Global quantification of mammalian gene expression control. Nature. 2011, 473: 337-342. 10.1038/nature10098.CrossRefPubMed
46.
go back to reference Le Moan N, Clement G, Le Maout S, Tacnet F, Toledano MB: The Saccharomyces cerevisiae proteome of oxidized protein thiols: contrasted functions for the thioredoxin and glutathione pathways. J Biol Chem. 2006, 281: 10420-10430. 10.1074/jbc.M513346200.CrossRefPubMed Le Moan N, Clement G, Le Maout S, Tacnet F, Toledano MB: The Saccharomyces cerevisiae proteome of oxidized protein thiols: contrasted functions for the thioredoxin and glutathione pathways. J Biol Chem. 2006, 281: 10420-10430. 10.1074/jbc.M513346200.CrossRefPubMed
47.
go back to reference Magherini F, Tani C, Gamberi T, Caselli A, Bianchi L, Bini L, Modesti A: Protein expression profiles in Saccharomyces cerevisiae during apoptosis induced by H2O2. Proteomics. 2007, 7: 1434-1445. 10.1002/pmic.200600796.CrossRefPubMed Magherini F, Tani C, Gamberi T, Caselli A, Bianchi L, Bini L, Modesti A: Protein expression profiles in Saccharomyces cerevisiae during apoptosis induced by H2O2. Proteomics. 2007, 7: 1434-1445. 10.1002/pmic.200600796.CrossRefPubMed
48.
go back to reference Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q: The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res. 2010, 38: W214-W220. 10.1093/nar/gkq537.PubMedCentralCrossRefPubMed Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q: The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function. Nucleic Acids Res. 2010, 38: W214-W220. 10.1093/nar/gkq537.PubMedCentralCrossRefPubMed
49.
go back to reference Rossignol DA, Frye RE: Mitochondrial dysfunction in autism spectrum disorders: a systematic review and meta-analysis. Mol Psychiatry. 2012, 17: 290-314. 10.1038/mp.2010.136.PubMedCentralCrossRefPubMed Rossignol DA, Frye RE: Mitochondrial dysfunction in autism spectrum disorders: a systematic review and meta-analysis. Mol Psychiatry. 2012, 17: 290-314. 10.1038/mp.2010.136.PubMedCentralCrossRefPubMed
50.
go back to reference Ashwood P, Wakefield AJ: Immune activation of peripheral blood and mucosal CD3+ lymphocyte cytokine profiles in children with autism and gastrointestinal symptoms. J Neuroimmunol. 2006, 173: 126-134. 10.1016/j.jneuroim.2005.12.007.CrossRefPubMed Ashwood P, Wakefield AJ: Immune activation of peripheral blood and mucosal CD3+ lymphocyte cytokine profiles in children with autism and gastrointestinal symptoms. J Neuroimmunol. 2006, 173: 126-134. 10.1016/j.jneuroim.2005.12.007.CrossRefPubMed
51.
go back to reference Chauhan A, Chauhan V: Oxidative stress in autism. Pathophysiology. 2006, 13: 171-181. 10.1016/j.pathophys.2006.05.007.CrossRefPubMed Chauhan A, Chauhan V: Oxidative stress in autism. Pathophysiology. 2006, 13: 171-181. 10.1016/j.pathophys.2006.05.007.CrossRefPubMed
52.
go back to reference Rossignol DA, Bradstreet JJ: Evidence of mitochondrial dysfunction in autism and implications for treatment. Am J Biochem Biotechnol. 2008, 4: 208-217.CrossRef Rossignol DA, Bradstreet JJ: Evidence of mitochondrial dysfunction in autism and implications for treatment. Am J Biochem Biotechnol. 2008, 4: 208-217.CrossRef
53.
go back to reference Halliwell B, Gutteridge , John MC: Free Radicals in Biology and Medicine. 2010, Oxford: Oxford Univ. Press, 4 Halliwell B, Gutteridge , John MC: Free Radicals in Biology and Medicine. 2010, Oxford: Oxford Univ. Press, 4
54.
go back to reference Volinsky R, Kinnunen , Paavo KJ: Oxidized phosphatidylcholines in membrane-level cellular signaling: from biophysics to physiology and molecular pathology. FEBS J. 2013, 280: 2806-2816. 10.1111/febs.12247.CrossRefPubMed Volinsky R, Kinnunen , Paavo KJ: Oxidized phosphatidylcholines in membrane-level cellular signaling: from biophysics to physiology and molecular pathology. FEBS J. 2013, 280: 2806-2816. 10.1111/febs.12247.CrossRefPubMed
55.
go back to reference Jana A, Hogan EL, Pahan K: Ceramide and neurodegeneration: susceptibility of neurons and oligodendrocytes to cell damage and death. J Neurol Sci. 2009, 278: 5-15. 10.1016/j.jns.2008.12.010.PubMedCentralCrossRefPubMed Jana A, Hogan EL, Pahan K: Ceramide and neurodegeneration: susceptibility of neurons and oligodendrocytes to cell damage and death. J Neurol Sci. 2009, 278: 5-15. 10.1016/j.jns.2008.12.010.PubMedCentralCrossRefPubMed
56.
go back to reference Butterfield DA, Perluigi M, Reed T, Muharib T, Hughes CP, Robinson , Renã AS, Sultana R: Redox proteomics in selected neurodegenerative disorders: from its infancy to future applications. Antioxid Redox Signal. 2012, 17: 1610-1655. 10.1089/ars.2011.4109.PubMedCentralCrossRefPubMed Butterfield DA, Perluigi M, Reed T, Muharib T, Hughes CP, Robinson , Renã AS, Sultana R: Redox proteomics in selected neurodegenerative disorders: from its infancy to future applications. Antioxid Redox Signal. 2012, 17: 1610-1655. 10.1089/ars.2011.4109.PubMedCentralCrossRefPubMed
57.
go back to reference Jena NR: DNA damage by reactive species: mechanisms, mutation and repair. J Biosci. 2012, 37: 503-517. 10.1007/s12038-012-9218-2.CrossRefPubMed Jena NR: DNA damage by reactive species: mechanisms, mutation and repair. J Biosci. 2012, 37: 503-517. 10.1007/s12038-012-9218-2.CrossRefPubMed
58.
go back to reference Nakamura T, Cho D, Lipton SA: Redox regulation of protein misfolding, mitochondrial dysfunction, synaptic damage, and cell death in neurodegenerative diseases. Exp Neurol. 2012, 238: 12-21. 10.1016/j.expneurol.2012.06.032.PubMedCentralCrossRefPubMed Nakamura T, Cho D, Lipton SA: Redox regulation of protein misfolding, mitochondrial dysfunction, synaptic damage, and cell death in neurodegenerative diseases. Exp Neurol. 2012, 238: 12-21. 10.1016/j.expneurol.2012.06.032.PubMedCentralCrossRefPubMed
59.
go back to reference Morano KA, Grant CM, Moye-Rowley WS: The response to heat shock and oxidative stress in Saccharomyces cerevisiae. Genetics. 2012, 190: 1157-1195. 10.1534/genetics.111.128033.PubMedCentralCrossRefPubMed Morano KA, Grant CM, Moye-Rowley WS: The response to heat shock and oxidative stress in Saccharomyces cerevisiae. Genetics. 2012, 190: 1157-1195. 10.1534/genetics.111.128033.PubMedCentralCrossRefPubMed
60.
go back to reference Kelleher RJ, Bear MF: The autistic neuron: troubled translation?. Cell. 2008, 135: 401-406. 10.1016/j.cell.2008.10.017.CrossRefPubMed Kelleher RJ, Bear MF: The autistic neuron: troubled translation?. Cell. 2008, 135: 401-406. 10.1016/j.cell.2008.10.017.CrossRefPubMed
61.
go back to reference Marazziti D, Baroni S, Picchetti M, Landi P, Silvestri S, Vatteroni E, Catena Dell’Osso M: Psychiatric disorders and mitochondrial dysfunctions. Eur Rev Med Pharmacol Sci. 2012, 16: 270-275.PubMed Marazziti D, Baroni S, Picchetti M, Landi P, Silvestri S, Vatteroni E, Catena Dell’Osso M: Psychiatric disorders and mitochondrial dysfunctions. Eur Rev Med Pharmacol Sci. 2012, 16: 270-275.PubMed
62.
go back to reference Martins-de-Souza D, Gattaz WF, Schmitt A, Rewerts C, Maccarrone G, Dias-Neto E, Turck CW: Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia. Eur Arch Psychiatry Clin Neurosci. 2009, 259: 151-163. 10.1007/s00406-008-0847-2.CrossRefPubMed Martins-de-Souza D, Gattaz WF, Schmitt A, Rewerts C, Maccarrone G, Dias-Neto E, Turck CW: Prefrontal cortex shotgun proteome analysis reveals altered calcium homeostasis and immune system imbalance in schizophrenia. Eur Arch Psychiatry Clin Neurosci. 2009, 259: 151-163. 10.1007/s00406-008-0847-2.CrossRefPubMed
63.
go back to reference Martins-de-Souza D, Maccarrone G, Wobrock T, Zerr I, Gormanns P, Reckow S, Falkai P, Schmitt A, Turck CW: Proteome analysis of the thalamus and cerebrospinal fluid reveals glycolysis dysfunction and potential biomarkers candidates for schizophrenia. J Psychiatr Res. 2010, 44: 1176-1189. 10.1016/j.jpsychires.2010.04.014.CrossRefPubMed Martins-de-Souza D, Maccarrone G, Wobrock T, Zerr I, Gormanns P, Reckow S, Falkai P, Schmitt A, Turck CW: Proteome analysis of the thalamus and cerebrospinal fluid reveals glycolysis dysfunction and potential biomarkers candidates for schizophrenia. J Psychiatr Res. 2010, 44: 1176-1189. 10.1016/j.jpsychires.2010.04.014.CrossRefPubMed
64.
go back to reference Ehlers MD: Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system. Nat Neurosci. 2003, 6: 231-242. 10.1038/nn1013.CrossRefPubMed Ehlers MD: Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system. Nat Neurosci. 2003, 6: 231-242. 10.1038/nn1013.CrossRefPubMed
65.
go back to reference Figueiredo-Pereira ME, Yakushin S, Cohen G: Disruption of the intracellular sulfhydryl homeostasis by cadmium-induced oxidative stress leads to protein thiolation and ubiquitination in neuronal cells. J Biol Chem. 1998, 273: 12703-12709. 10.1074/jbc.273.21.12703.CrossRefPubMed Figueiredo-Pereira ME, Yakushin S, Cohen G: Disruption of the intracellular sulfhydryl homeostasis by cadmium-induced oxidative stress leads to protein thiolation and ubiquitination in neuronal cells. J Biol Chem. 1998, 273: 12703-12709. 10.1074/jbc.273.21.12703.CrossRefPubMed
66.
go back to reference Yap L, Garcia JV, Han DS, Cadenas E: Role of nitric oxide-mediated glutathionylation in neuronal function: potential regulation of energy utilization. Biochem J. 2010, 428: 85-93. 10.1042/BJ20100164.PubMedCentralCrossRefPubMed Yap L, Garcia JV, Han DS, Cadenas E: Role of nitric oxide-mediated glutathionylation in neuronal function: potential regulation of energy utilization. Biochem J. 2010, 428: 85-93. 10.1042/BJ20100164.PubMedCentralCrossRefPubMed
67.
go back to reference Gu F, Chauhan V, Chauhan A: Impaired synthesis and antioxidant defense of glutathione in the cerebellum of autistic subjects: alterations in the activities and protein expression of glutathione-related enzymes. Free Radic Biol Med. 2013, 65C: 488-496.CrossRef Gu F, Chauhan V, Chauhan A: Impaired synthesis and antioxidant defense of glutathione in the cerebellum of autistic subjects: alterations in the activities and protein expression of glutathione-related enzymes. Free Radic Biol Med. 2013, 65C: 488-496.CrossRef
68.
go back to reference Breitenbach M, Ralser M, Perrone GG, Iglseder B, Rinnerthaler M, Dawes IW: Oxidative stress and neurodegeneration: the yeast model system. Front Biosci (Landmark Ed). 2013, 18: 1174-1193. 10.2741/4171.CrossRef Breitenbach M, Ralser M, Perrone GG, Iglseder B, Rinnerthaler M, Dawes IW: Oxidative stress and neurodegeneration: the yeast model system. Front Biosci (Landmark Ed). 2013, 18: 1174-1193. 10.2741/4171.CrossRef
69.
go back to reference Ralser M, Wamelink MM, Kowald A, Gerisch B, Heeren G, Struys EA, Klipp E, Jakobs C, Breitenbach M, Lehrach H, Krobitsch S: Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress. J Biol. 2007, 6: 10-10.1186/jbiol61.PubMedCentralCrossRefPubMed Ralser M, Wamelink MM, Kowald A, Gerisch B, Heeren G, Struys EA, Klipp E, Jakobs C, Breitenbach M, Lehrach H, Krobitsch S: Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress. J Biol. 2007, 6: 10-10.1186/jbiol61.PubMedCentralCrossRefPubMed
70.
go back to reference Tosato V, Grüning N, Breitenbach M, Arnak R, Ralser M, Bruschi CV: Warburg effect and translocation-induced genomic instability: two yeast models for cancer cells. Front Oncol. 2012, 2: 212-PubMedCentralPubMed Tosato V, Grüning N, Breitenbach M, Arnak R, Ralser M, Bruschi CV: Warburg effect and translocation-induced genomic instability: two yeast models for cancer cells. Front Oncol. 2012, 2: 212-PubMedCentralPubMed
71.
go back to reference Aung-Htut MT, Ayer A, Breitenbach M, Dawes IW: Oxidative stresses and ageing. Subcell Biochem. 2012, 57: 13-54.CrossRefPubMed Aung-Htut MT, Ayer A, Breitenbach M, Dawes IW: Oxidative stresses and ageing. Subcell Biochem. 2012, 57: 13-54.CrossRefPubMed
72.
go back to reference Darnell JC, Van Driesche SJ, Zhang C, Hung KY, Mele A, Fraser CE, Stone EF, Chen C, Fak JJ, Chi SW, Licatalosi DD, Richter JD, Darnell RB: FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell. 2011, 146: 247-261. 10.1016/j.cell.2011.06.013.PubMedCentralCrossRefPubMed Darnell JC, Van Driesche SJ, Zhang C, Hung KY, Mele A, Fraser CE, Stone EF, Chen C, Fak JJ, Chi SW, Licatalosi DD, Richter JD, Darnell RB: FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell. 2011, 146: 247-261. 10.1016/j.cell.2011.06.013.PubMedCentralCrossRefPubMed
73.
go back to reference Gkogkas CG, Khoutorsky A, Ran I, Rampakakis E, Nevarko T, Weatherill DB, Vasuta C, Yee S, Truitt M, Dallaire P, Major F, Lasko P, Ruggero D, Nader K, Lacaille J, Sonenberg N: Autism-related deficits via dysregulated eIF4E-dependent translational control. Nature. 2013, 493: 371-377.PubMedCentralCrossRefPubMed Gkogkas CG, Khoutorsky A, Ran I, Rampakakis E, Nevarko T, Weatherill DB, Vasuta C, Yee S, Truitt M, Dallaire P, Major F, Lasko P, Ruggero D, Nader K, Lacaille J, Sonenberg N: Autism-related deficits via dysregulated eIF4E-dependent translational control. Nature. 2013, 493: 371-377.PubMedCentralCrossRefPubMed
74.
go back to reference Greenough WT, Klintsova AY, Irwin SA, Galvez R, Bates KE, Weiler IJ: Synaptic regulation of protein synthesis and the fragile X protein. Proc Natl Acad Sci USA. 2001, 98: 7101-7106. 10.1073/pnas.141145998.PubMedCentralCrossRefPubMed Greenough WT, Klintsova AY, Irwin SA, Galvez R, Bates KE, Weiler IJ: Synaptic regulation of protein synthesis and the fragile X protein. Proc Natl Acad Sci USA. 2001, 98: 7101-7106. 10.1073/pnas.141145998.PubMedCentralCrossRefPubMed
Metadata
Title
Protein signatures of oxidative stress response in a patient specific cell line model for autism
Authors
Andreas G Chiocchetti
Denise Haslinger
Maximilian Boesch
Thomas Karl
Stefan Wiemann
Christine M Freitag
Fritz Poustka
Burghardt Scheibe
Johann W Bauer
Helmut Hintner
Michael Breitenbach
Josef Kellermann
Friedrich Lottspeich
Sabine M Klauck
Lore Breitenbach-Koller
Publication date
01-12-2014
Publisher
BioMed Central
Published in
Molecular Autism / Issue 1/2014
Electronic ISSN: 2040-2392
DOI
https://doi.org/10.1186/2040-2392-5-10

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