Skip to main content
Top
Published in: Molecular Autism 1/2013

Open Access 01-12-2013 | Editorial

SHANK3 haploinsufficiency: a “common” but underdiagnosed highly penetrant monogenic cause of autism spectrum disorders

Authors: Catalina Betancur, Joseph D Buxbaum

Published in: Molecular Autism | Issue 1/2013

Login to get access

Abstract

Autism spectrum disorders (ASD) are etiologically heterogeneous, with hundreds of rare, highly penetrant mutations and genomic imbalances involved, each contributing to a very small fraction of cases. In this issue of Molecular Autism, Soorya and colleagues evaluated 32 patients with Phelan-McDermid syndrome, caused by either deletion of 22q13.33 or SHANK3 mutations, using gold-standard diagnostic assessments and showed that 84% met criteria for ASD, including 75% meeting criteria for autism. This study and prior studies demonstrate that this syndrome appears to be one of the more penetrant causes of ASD. In this companion review, we show that in samples ascertained for ASD, SHANK3 haploinsufficiency is one of the more prevalent monogenic causes of ASD, explaining at least 0.5% of cases. We note that SHANK3 haploinsufficiency remains underdiagnosed in ASD and developmental delay, although with the increasingly widespread use of chromosomal microarray analysis and targeted sequencing of SHANK3, the number of cases is bound to rise.
Appendix
Available only for authorised users
Literature
1.
go back to reference Betancur C: Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting. Brain Res. 2011, 1380: 42-77.CrossRefPubMed Betancur C: Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting. Brain Res. 2011, 1380: 42-77.CrossRefPubMed
2.
go back to reference Durand CM, Betancur C, Boeckers TM, Bockmann J, Chaste P, Fauchereau F, Nygren G, Rastam M, Gillberg IC, Anckarsater H: Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders. Nat Genet. 2007, 39 (1): 25-27. 10.1038/ng1933.PubMedCentralCrossRefPubMed Durand CM, Betancur C, Boeckers TM, Bockmann J, Chaste P, Fauchereau F, Nygren G, Rastam M, Gillberg IC, Anckarsater H: Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders. Nat Genet. 2007, 39 (1): 25-27. 10.1038/ng1933.PubMedCentralCrossRefPubMed
3.
go back to reference Phelan K, McDermid HE: The 22q13.3 deletion syndrome (Phelan-McDermid syndrome). Mol Syndromol. 2012, 2 (3–5): 186-201.PubMedCentralPubMed Phelan K, McDermid HE: The 22q13.3 deletion syndrome (Phelan-McDermid syndrome). Mol Syndromol. 2012, 2 (3–5): 186-201.PubMedCentralPubMed
4.
go back to reference Betancur C, Coleman M: Etiological heterogeneity in autism spectrum disorders: role of rare variants. The Neuroscience of Autism Spectrum Disorders. Edited by: Buxbaum JD, Hof PR. 2013, Oxford: Academic, 113-144.CrossRef Betancur C, Coleman M: Etiological heterogeneity in autism spectrum disorders: role of rare variants. The Neuroscience of Autism Spectrum Disorders. Edited by: Buxbaum JD, Hof PR. 2013, Oxford: Academic, 113-144.CrossRef
5.
go back to reference Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, Yoon S, Krasnitz A, Kendall J: Strong association of de novo copy number mutations with autism. Science. 2007, 316 (5823): 445-449. 10.1126/science.1138659.PubMedCentralCrossRefPubMed Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, Yoon S, Krasnitz A, Kendall J: Strong association of de novo copy number mutations with autism. Science. 2007, 316 (5823): 445-449. 10.1126/science.1138659.PubMedCentralCrossRefPubMed
6.
go back to reference Moessner R, Marshall CR, Sutcliffe JS, Skaug J, Pinto D, Vincent J, Zwaigenbaum L, Fernandez B, Roberts W, Szatmari P: Contribution of SHANK3 mutations to autism spectrum disorder. Am J Hum Genet. 2007, 81 (6): 1289-1297. 10.1086/522590.PubMedCentralCrossRefPubMed Moessner R, Marshall CR, Sutcliffe JS, Skaug J, Pinto D, Vincent J, Zwaigenbaum L, Fernandez B, Roberts W, Szatmari P: Contribution of SHANK3 mutations to autism spectrum disorder. Am J Hum Genet. 2007, 81 (6): 1289-1297. 10.1086/522590.PubMedCentralCrossRefPubMed
7.
go back to reference Weiss LA, Shen Y, Korn JM, Arking DE, Miller DT, Fossdal R, Saemundsen E, Stefansson H, Ferreira MA, Green T: Association between microdeletion and microduplication at 16p11.2 and autism. N Engl J Med. 2008, 358 (7): 667-675. 10.1056/NEJMoa075974.CrossRefPubMed Weiss LA, Shen Y, Korn JM, Arking DE, Miller DT, Fossdal R, Saemundsen E, Stefansson H, Ferreira MA, Green T: Association between microdeletion and microduplication at 16p11.2 and autism. N Engl J Med. 2008, 358 (7): 667-675. 10.1056/NEJMoa075974.CrossRefPubMed
8.
go back to reference van der Zwaag B, Franke L, Poot M, Hochstenbach R, Spierenburg HA, Vorstman JA, van Daalen E, de Jonge MV, Verbeek NE, Brilstra EH: Gene-network analysis identifies susceptibility genes related to glycobiology in autism. PLoS One. 2009, 4 (5): e5324-10.1371/journal.pone.0005324.PubMedCentralCrossRefPubMed van der Zwaag B, Franke L, Poot M, Hochstenbach R, Spierenburg HA, Vorstman JA, van Daalen E, de Jonge MV, Verbeek NE, Brilstra EH: Gene-network analysis identifies susceptibility genes related to glycobiology in autism. PLoS One. 2009, 4 (5): e5324-10.1371/journal.pone.0005324.PubMedCentralCrossRefPubMed
9.
go back to reference Guilmatre A, Dubourg C, Mosca AL, Legallic S, Goldenberg A, Drouin-Garraud V, Layet V, Rosier A, Briault S, Bonnet-Brilhault F: Recurrent rearrangements in synaptic and neurodevelopmental genes and shared biologic pathways in schizophrenia, autism, and mental retardation. Arch Gen Psychiatry. 2009, 66 (9): 947-956. 10.1001/archgenpsychiatry.2009.80.PubMedCentralCrossRefPubMed Guilmatre A, Dubourg C, Mosca AL, Legallic S, Goldenberg A, Drouin-Garraud V, Layet V, Rosier A, Briault S, Bonnet-Brilhault F: Recurrent rearrangements in synaptic and neurodevelopmental genes and shared biologic pathways in schizophrenia, autism, and mental retardation. Arch Gen Psychiatry. 2009, 66 (9): 947-956. 10.1001/archgenpsychiatry.2009.80.PubMedCentralCrossRefPubMed
10.
go back to reference Qiao Y, Riendeau N, Koochek M, Liu X, Harvard C, Hildebrand MJ, Holden JJ, Rajcan-Separovic E, Lewis ME: Phenomic determinants of genomic variation in autism spectrum disorders. J Med Genet. 2009, 46 (10): 680-688. 10.1136/jmg.2009.066795.CrossRefPubMed Qiao Y, Riendeau N, Koochek M, Liu X, Harvard C, Hildebrand MJ, Holden JJ, Rajcan-Separovic E, Lewis ME: Phenomic determinants of genomic variation in autism spectrum disorders. J Med Genet. 2009, 46 (10): 680-688. 10.1136/jmg.2009.066795.CrossRefPubMed
11.
go back to reference Schaefer GB, Starr L, Pickering D, Skar G, Dehaai K, Sanger WG: Array comparative genomic hybridization findings in a cohort referred for an autism evaluation. J Child Neurol. 2010, 25 (12): 1498-1503. 10.1177/0883073810370479.CrossRefPubMed Schaefer GB, Starr L, Pickering D, Skar G, Dehaai K, Sanger WG: Array comparative genomic hybridization findings in a cohort referred for an autism evaluation. J Child Neurol. 2010, 25 (12): 1498-1503. 10.1177/0883073810370479.CrossRefPubMed
12.
go back to reference Pinto D, Pagnamenta AT, Klei L, Anney R, Merico D, Regan R, Conroy J, Magalhaes TR, Correia C, Abrahams BS: Functional impact of global rare copy number variation in autism spectrum disorders. Nature. 2010, 466 (7304): 368-372. 10.1038/nature09146.PubMedCentralCrossRefPubMed Pinto D, Pagnamenta AT, Klei L, Anney R, Merico D, Regan R, Conroy J, Magalhaes TR, Correia C, Abrahams BS: Functional impact of global rare copy number variation in autism spectrum disorders. Nature. 2010, 466 (7304): 368-372. 10.1038/nature09146.PubMedCentralCrossRefPubMed
13.
go back to reference Shen Y, Dies KA, Holm IA, Bridgemohan C, Sobeih MM, Caronna EB, Miller KJ, Frazier JA, Silverstein I, Picker J: Clinical genetic testing for patients with autism spectrum disorders. Pediatrics. 2010, 125 (4): e727-e735. 10.1542/peds.2009-1684.PubMedCentralCrossRefPubMed Shen Y, Dies KA, Holm IA, Bridgemohan C, Sobeih MM, Caronna EB, Miller KJ, Frazier JA, Silverstein I, Picker J: Clinical genetic testing for patients with autism spectrum disorders. Pediatrics. 2010, 125 (4): e727-e735. 10.1542/peds.2009-1684.PubMedCentralCrossRefPubMed
14.
go back to reference Rosenfeld JA, Ballif BC, Torchia BS, Sahoo T, Ravnan JB, Schultz R, Lamb A, Bejjani BA, Shaffer LG: Copy number variations associated with autism spectrum disorders contribute to a spectrum of neurodevelopmental disorders. Genet Med. 2010, 12: 694-702. 10.1097/GIM.0b013e3181f0c5f3.CrossRefPubMed Rosenfeld JA, Ballif BC, Torchia BS, Sahoo T, Ravnan JB, Schultz R, Lamb A, Bejjani BA, Shaffer LG: Copy number variations associated with autism spectrum disorders contribute to a spectrum of neurodevelopmental disorders. Genet Med. 2010, 12: 694-702. 10.1097/GIM.0b013e3181f0c5f3.CrossRefPubMed
15.
go back to reference Bremer A, Giacobini M, Eriksson M, Gustavsson P, Nordin V, Fernell E, Gillberg C, Nordgren A, Uppstromer A, Anderlid BM: Copy number variation characteristics in subpopulations of patients with autism spectrum disorders. Am J Med Genet B Neuropsychiatr Genet. 2011, 156 (2): 115-124. 10.1002/ajmg.b.31142.CrossRefPubMed Bremer A, Giacobini M, Eriksson M, Gustavsson P, Nordin V, Fernell E, Gillberg C, Nordgren A, Uppstromer A, Anderlid BM: Copy number variation characteristics in subpopulations of patients with autism spectrum disorders. Am J Med Genet B Neuropsychiatr Genet. 2011, 156 (2): 115-124. 10.1002/ajmg.b.31142.CrossRefPubMed
16.
go back to reference Sanders SJ, Ercan-Sencicek AG, Hus V, Luo R, Murtha MT, Moreno-De-Luca D, Chu SH, Moreau MP, Gupta AR, Thomson SA: Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism. Neuron. 2011, 70 (5): 863-885. 10.1016/j.neuron.2011.05.002.PubMedCentralCrossRefPubMed Sanders SJ, Ercan-Sencicek AG, Hus V, Luo R, Murtha MT, Moreno-De-Luca D, Chu SH, Moreau MP, Gupta AR, Thomson SA: Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism. Neuron. 2011, 70 (5): 863-885. 10.1016/j.neuron.2011.05.002.PubMedCentralCrossRefPubMed
17.
go back to reference Wisniowiecka-Kowalnik B, Kastory-Bronowska M, Bartnik M, Derwinska K, Dymczak-Domini W, Szumbarska D, Ziemka E, Szczaluba K, Sykulski M, Gambin T: Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders. Eur J Hum Genet. 2013, 21 (6): 620-625. 10.1038/ejhg.2012.219.PubMedCentralCrossRefPubMed Wisniowiecka-Kowalnik B, Kastory-Bronowska M, Bartnik M, Derwinska K, Dymczak-Domini W, Szumbarska D, Ziemka E, Szczaluba K, Sykulski M, Gambin T: Application of custom-designed oligonucleotide array CGH in 145 patients with autistic spectrum disorders. Eur J Hum Genet. 2013, 21 (6): 620-625. 10.1038/ejhg.2012.219.PubMedCentralCrossRefPubMed
18.
go back to reference Girirajan S, Johnson RL, Tassone F, Balciuniene J, Katiyar N, Fox K, Baker C, Srikanth A, Yeoh KH, Khoo SJ: Global increases in both common and rare copy number load associated with autism. Hum Mol Genet. 2013, 10.1093/hmg/ddt136. advance online publication, Girirajan S, Johnson RL, Tassone F, Balciuniene J, Katiyar N, Fox K, Baker C, Srikanth A, Yeoh KH, Khoo SJ: Global increases in both common and rare copy number load associated with autism. Hum Mol Genet. 2013, 10.1093/hmg/ddt136. advance online publication,
19.
go back to reference Hamdan FF, Gauthier J, Araki Y, Lin DT, Yoshizawa Y, Higashi K, Park AR, Spiegelman D, Dobrzeniecka S, Piton A: Excess of de novo deleterious mutations in genes associated with glutamatergic systems in nonsyndromic intellectual disability. Am J Hum Genet. 2011, 88 (3): 306-316. 10.1016/j.ajhg.2011.02.001.PubMedCentralCrossRefPubMed Hamdan FF, Gauthier J, Araki Y, Lin DT, Yoshizawa Y, Higashi K, Park AR, Spiegelman D, Dobrzeniecka S, Piton A: Excess of de novo deleterious mutations in genes associated with glutamatergic systems in nonsyndromic intellectual disability. Am J Hum Genet. 2011, 88 (3): 306-316. 10.1016/j.ajhg.2011.02.001.PubMedCentralCrossRefPubMed
20.
go back to reference Cooper GM, Coe BP, Girirajan S, Rosenfeld JA, Vu TH, Baker C, Williams C, Stalker H, Hamid R, Hannig V: A copy number variation morbidity map of developmental delay. Nat Genet. 2011, 43 (9): 838-846. 10.1038/ng.909.PubMedCentralCrossRefPubMed Cooper GM, Coe BP, Girirajan S, Rosenfeld JA, Vu TH, Baker C, Williams C, Stalker H, Hamid R, Hannig V: A copy number variation morbidity map of developmental delay. Nat Genet. 2011, 43 (9): 838-846. 10.1038/ng.909.PubMedCentralCrossRefPubMed
21.
go back to reference Gong X, Jiang YW, Zhang X, An Y, Zhang J, Wu Y, Wang J, Sun Y, Liu Y, Gao X: High proportion of 22q13 deletions and SHANK3 mutations in Chinese patients with intellectual disability. PLoS One. 2012, 7 (4): e34739-10.1371/journal.pone.0034739.PubMedCentralCrossRefPubMed Gong X, Jiang YW, Zhang X, An Y, Zhang J, Wu Y, Wang J, Sun Y, Liu Y, Gao X: High proportion of 22q13 deletions and SHANK3 mutations in Chinese patients with intellectual disability. PLoS One. 2012, 7 (4): e34739-10.1371/journal.pone.0034739.PubMedCentralCrossRefPubMed
22.
go back to reference Gauthier J, Spiegelman D, Piton A, Lafreniere RG, Laurent S, St-Onge J, Lapointe L, Hamdan FF, Cossette P, Mottron L: Novel de novo SHANK3 mutation in autistic patients. Am J Med Genet B Neuropsychiatr Genet. 2009, 150B (3): 421-424. 10.1002/ajmg.b.30822.CrossRefPubMed Gauthier J, Spiegelman D, Piton A, Lafreniere RG, Laurent S, St-Onge J, Lapointe L, Hamdan FF, Cossette P, Mottron L: Novel de novo SHANK3 mutation in autistic patients. Am J Med Genet B Neuropsychiatr Genet. 2009, 150B (3): 421-424. 10.1002/ajmg.b.30822.CrossRefPubMed
23.
go back to reference Schaaf CP, Sabo A, Sakai Y, Crosby J, Muzny D, Hawes A, Lewis L, Akbar H, Varghese R, Boerwinkle E: Oligogenic heterozygosity in individuals with high-functioning autism spectrum disorders. Hum Mol Genet. 2011, 20 (17): 3366-3375. 10.1093/hmg/ddr243.PubMedCentralCrossRefPubMed Schaaf CP, Sabo A, Sakai Y, Crosby J, Muzny D, Hawes A, Lewis L, Akbar H, Varghese R, Boerwinkle E: Oligogenic heterozygosity in individuals with high-functioning autism spectrum disorders. Hum Mol Genet. 2011, 20 (17): 3366-3375. 10.1093/hmg/ddr243.PubMedCentralCrossRefPubMed
24.
go back to reference Boccuto L, Lauri M, Sarasua SM, Skinner CD, Buccella D, Dwivedi A, Orteschi D, Collins JS, Zollino M, Visconti P: Prevalence of SHANK3 variants in patients with different subtypes of autism spectrum disorders. Eur J Hum Genet. 2013, 21 (3): 310-316. 10.1038/ejhg.2012.175.PubMedCentralCrossRefPubMed Boccuto L, Lauri M, Sarasua SM, Skinner CD, Buccella D, Dwivedi A, Orteschi D, Collins JS, Zollino M, Visconti P: Prevalence of SHANK3 variants in patients with different subtypes of autism spectrum disorders. Eur J Hum Genet. 2013, 21 (3): 310-316. 10.1038/ejhg.2012.175.PubMedCentralCrossRefPubMed
Metadata
Title
SHANK3 haploinsufficiency: a “common” but underdiagnosed highly penetrant monogenic cause of autism spectrum disorders
Authors
Catalina Betancur
Joseph D Buxbaum
Publication date
01-12-2013
Publisher
BioMed Central
Published in
Molecular Autism / Issue 1/2013
Electronic ISSN: 2040-2392
DOI
https://doi.org/10.1186/2040-2392-4-17

Other articles of this Issue 1/2013

Molecular Autism 1/2013 Go to the issue