Skip to main content
Top
Published in: Diagnostic Pathology 1/2013

Open Access 01-12-2013 | Research

A novel approach for quantitative assessment of mucosal damage in inflammatory bowel disease

Authors: Ismail I Matalka, Faruq A Al-Omari, Rola M Salama, Alia H Mohtaseb

Published in: Diagnostic Pathology | Issue 1/2013

Login to get access

Abstract

Aims

One of the main reliable histological features to suggest the diagnosis of inflammatory bowel disease is the presence of significant distortion of the crypt architecture indicating the chronic nature of the disease resulting in mucosal damage. This feature has a considerable intra-observer and inter-observer variability leading to significant subjectivity in colonic biopsy assessment. In this paper, we present a novel automated system to assess mucosal damage and architectural distortion in inflammatory bowel disease (IBD).

Methods

The proposed system relies on advanced image understating and processing techniques to segment digitally acquired images of microscopic biopsies, then, to extract key features to quantify the crypts irregularities in shape and distribution. These features were used as inputs to an artificial intelligent classifier that, after a training phase, can carry out the assessment automatically.

Results

The developed system was evaluated using 118 IBD biopsies. 116 out of 118 biopsies were correctly classified as compared to the consensus of three expert pathologists, achieving an overall precision of 98.31%.

Conclusions

An automated intelligent system to quantitatively assess inflammatory bowel disease was developed. The proposed system utilized advanced image understanding techniques together with an intelligent classifier to conduct the assessment. The developed system proved to be reliable, robust, and minimizes subjectivity and inter- and intra-observer variability.

Virtual slides

Appendix
Available only for authorised users
Literature
1.
go back to reference Gramlish T, Petras RE: Pathology of inflammatory bowel disease. Semin Pediatr Surg. 2007, 16: 154-163. 10.1053/j.sempedsurg.2007.04.005.CrossRef Gramlish T, Petras RE: Pathology of inflammatory bowel disease. Semin Pediatr Surg. 2007, 16: 154-163. 10.1053/j.sempedsurg.2007.04.005.CrossRef
2.
go back to reference Williams JW, Shepherd NA: Pathology of chronic inflammatory bowel disease. Surgery. 2005, 23 (10): 346-349. Williams JW, Shepherd NA: Pathology of chronic inflammatory bowel disease. Surgery. 2005, 23 (10): 346-349.
3.
go back to reference Ludeman L, Shepherd NA: Problem areas in the pathology of chronic inflammatory bowel disease. Curr Diagn Pathol. 2006, 12: 248-260. 10.1016/j.cdip.2006.05.001.CrossRef Ludeman L, Shepherd NA: Problem areas in the pathology of chronic inflammatory bowel disease. Curr Diagn Pathol. 2006, 12: 248-260. 10.1016/j.cdip.2006.05.001.CrossRef
4.
go back to reference Jenkins D, Balsitis M, Gallivan S, et al.: Guidelines for the initial biopsy diagnosis of suspected chronic idiopathic inflammatory bowel disease. J Clin Patthol. 1997, 50: 93-105. 10.1136/jcp.50.2.93.CrossRef Jenkins D, Balsitis M, Gallivan S, et al.: Guidelines for the initial biopsy diagnosis of suspected chronic idiopathic inflammatory bowel disease. J Clin Patthol. 1997, 50: 93-105. 10.1136/jcp.50.2.93.CrossRef
5.
go back to reference Geboes K: Pathology of inflammatory bowel disease (IBD): variability with time and treatment. Colorectal disease. 2000, 3: 2-12. Geboes K: Pathology of inflammatory bowel disease (IBD): variability with time and treatment. Colorectal disease. 2000, 3: 2-12.
6.
go back to reference Kayser K, Shaver M, Modlinger F, Postl K, Moyers JJ: Neighborhood Analysis of Low Magnification Structures (Glands) in Healthy, Adenomatous, and Carcinomatous Colon Mucos. Pathology-Research and Practice. 1986, 181 (2): 153-158. 10.1016/S0344-0338(86)80004-8.CrossRef Kayser K, Shaver M, Modlinger F, Postl K, Moyers JJ: Neighborhood Analysis of Low Magnification Structures (Glands) in Healthy, Adenomatous, and Carcinomatous Colon Mucos. Pathology-Research and Practice. 1986, 181 (2): 153-158. 10.1016/S0344-0338(86)80004-8.CrossRef
7.
go back to reference Kayser KK, Modlinger F, Postl K: Quantitative low-resolution analysis of colon mucosa. Anal Quant Cytol Histol. 1985, 7 (3): 205-12.PubMed Kayser KK, Modlinger F, Postl K: Quantitative low-resolution analysis of colon mucosa. Anal Quant Cytol Histol. 1985, 7 (3): 205-12.PubMed
9.
go back to reference Kayser K, et al.: Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the Internet. Diagn Pathol. 2006, 1: 10-10.1186/1746-1596-1-10.PubMedCentralCrossRefPubMed Kayser K, et al.: Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the Internet. Diagn Pathol. 2006, 1: 10-10.1186/1746-1596-1-10.PubMedCentralCrossRefPubMed
10.
go back to reference De Roulers C, Ameisen D, Badoual M, Gerin C, Granier A, Lartaud M: Analyzing huge pathology images with open source software. Diagn Pathol. 2013, 8: 92-10.1186/1746-1596-8-92.CrossRef De Roulers C, Ameisen D, Badoual M, Gerin C, Granier A, Lartaud M: Analyzing huge pathology images with open source software. Diagn Pathol. 2013, 8: 92-10.1186/1746-1596-8-92.CrossRef
11.
go back to reference Sharma H, Alekseychuk A, Leskovsky P, Hellwich O, Anand RS, Zerbe N, Hufnagl P: Determining similarity in histological images using graph-theoretic description and matching methods for content-based image retrieval in medical diagnostics. Diagn Pathol. 2012, 7: 134-10.1186/1746-1596-7-134.PubMedCentralCrossRefPubMed Sharma H, Alekseychuk A, Leskovsky P, Hellwich O, Anand RS, Zerbe N, Hufnagl P: Determining similarity in histological images using graph-theoretic description and matching methods for content-based image retrieval in medical diagnostics. Diagn Pathol. 2012, 7: 134-10.1186/1746-1596-7-134.PubMedCentralCrossRefPubMed
12.
13.
go back to reference Vido JR, Adam RL, Lorand-Metze IGH, Metze K: Computerized texture analysis of atypical immature myeloid precursors in patients with myelodysplastic syndromes: an entity between blasts and promyelocytes. Diagn Pathol. 2011, 6: 93-10.1186/1746-1596-6-93.PubMedCentralCrossRefPubMed Vido JR, Adam RL, Lorand-Metze IGH, Metze K: Computerized texture analysis of atypical immature myeloid precursors in patients with myelodysplastic syndromes: an entity between blasts and promyelocytes. Diagn Pathol. 2011, 6: 93-10.1186/1746-1596-6-93.PubMedCentralCrossRefPubMed
14.
go back to reference Absar S, Anjum MJK, Haboubi N: A new combined form significantly improves accuracy of pathological diagnosis in inflammatory bowel disease in absence of the clinicopathological conference. Tech Coloproctol. 2006, 10: 227-232. 10.1007/s10151-006-0284-z.CrossRefPubMed Absar S, Anjum MJK, Haboubi N: A new combined form significantly improves accuracy of pathological diagnosis in inflammatory bowel disease in absence of the clinicopathological conference. Tech Coloproctol. 2006, 10: 227-232. 10.1007/s10151-006-0284-z.CrossRefPubMed
15.
go back to reference Castleman K: Digital Image Processing. 1996, Upper Saddle River, NJ: Prentice Hall Castleman K: Digital Image Processing. 1996, Upper Saddle River, NJ: Prentice Hall
16.
go back to reference Kass M, Witkin A, Terzopoulos D: Snakes: active contour models. Proc Int Conf Computer Vision. 1987, 261-268. Kass M, Witkin A, Terzopoulos D: Snakes: active contour models. Proc Int Conf Computer Vision. 1987, 261-268.
17.
go back to reference Kass M, Witkin A, Terzopoulos D: Snakes: active contour models. Int J of Computer Vision. 1988, 1: 321-331. 10.1007/BF00133570.CrossRef Kass M, Witkin A, Terzopoulos D: Snakes: active contour models. Int J of Computer Vision. 1988, 1: 321-331. 10.1007/BF00133570.CrossRef
18.
go back to reference Zahn C, Roskies R: Fourier descriptors for plane closed curves. IEEE Trans on Computers. 1972, c-21 (3): 268-281. Zahn C, Roskies R: Fourier descriptors for plane closed curves. IEEE Trans on Computers. 1972, c-21 (3): 268-281.
19.
go back to reference Arbter K, Snyder W, Burkhardt H, et al.: Application of affine-invariant Fourier Descriptors to recognition of 3-D objects. IEEE Trans PAMI. 1990, 12 (7): 640-647. 10.1109/34.56206.CrossRef Arbter K, Snyder W, Burkhardt H, et al.: Application of affine-invariant Fourier Descriptors to recognition of 3-D objects. IEEE Trans PAMI. 1990, 12 (7): 640-647. 10.1109/34.56206.CrossRef
20.
go back to reference Karger D, Klein P, Targan R: A randomized linear-time algorithms to find minimal spanning trees. J ACM. 1995, 42: 321-328. 10.1145/201019.201022.CrossRef Karger D, Klein P, Targan R: A randomized linear-time algorithms to find minimal spanning trees. J ACM. 1995, 42: 321-328. 10.1145/201019.201022.CrossRef
21.
go back to reference Moris O: Graph theory for image analysis: an approach based on the shortest spanning tree. IEE Proc of Communication Radar and Signal Processing. 1996, 133 (2): 146-152.CrossRef Moris O: Graph theory for image analysis: an approach based on the shortest spanning tree. IEE Proc of Communication Radar and Signal Processing. 1996, 133 (2): 146-152.CrossRef
22.
go back to reference Horvitz E, Breese J, Henrion M: Decision theory in expert systems and artificial intelligence. Int J of Approximate Reasoning. 1988, 2 (3): 247-302. 10.1016/0888-613X(88)90120-X.CrossRef Horvitz E, Breese J, Henrion M: Decision theory in expert systems and artificial intelligence. Int J of Approximate Reasoning. 1988, 2 (3): 247-302. 10.1016/0888-613X(88)90120-X.CrossRef
23.
go back to reference Specht DF: Probabilistic neural networks. Neural Netw. 1990, 3: 109-118. 10.1016/0893-6080(90)90049-Q.CrossRef Specht DF: Probabilistic neural networks. Neural Netw. 1990, 3: 109-118. 10.1016/0893-6080(90)90049-Q.CrossRef
24.
go back to reference Parzen E: On estimation of a probability density function and mode. ANN Mathematical Statistics. 1962, 33: 1065-1076. 10.1214/aoms/1177704472.CrossRef Parzen E: On estimation of a probability density function and mode. ANN Mathematical Statistics. 1962, 33: 1065-1076. 10.1214/aoms/1177704472.CrossRef
25.
go back to reference Muller H, Muller W, Marchand-Maillet S, et al.: Performance evaluation in content-based image retrieval: overview and proposals. Pattern Recong Let. 2000, 22: 593-601.CrossRef Muller H, Muller W, Marchand-Maillet S, et al.: Performance evaluation in content-based image retrieval: overview and proposals. Pattern Recong Let. 2000, 22: 593-601.CrossRef
Metadata
Title
A novel approach for quantitative assessment of mucosal damage in inflammatory bowel disease
Authors
Ismail I Matalka
Faruq A Al-Omari
Rola M Salama
Alia H Mohtaseb
Publication date
01-12-2013
Publisher
BioMed Central
Published in
Diagnostic Pathology / Issue 1/2013
Electronic ISSN: 1746-1596
DOI
https://doi.org/10.1186/1746-1596-8-156

Other articles of this Issue 1/2013

Diagnostic Pathology 1/2013 Go to the issue