Skip to main content
Top
Published in: Virology Journal 1/2015

Open Access 01-12-2015 | Research

Viral Etiology of acute respiratory tract infections in hospitalized children and adults in Shandong Province, China

Authors: Ti Liu, Zhong Li, Shengyang Zhang, Shaoxia Song, Wu Julong, Yi Lin, Nongjian Guo, Chunyan Xing, Aiqiang Xu, Zhenqiang Bi, Xianjun Wang

Published in: Virology Journal | Issue 1/2015

Login to get access

Abstract

Background

The dominant viral etiologies responsible for acute respiratory infections (ARIs) are poorly understood, particularly among hospitalized patients. Improved etiological insight is needed to improve clinical management and prevention of ARIs.

Methods

Clinical and demographic information and throat swabs were collected from 607 patients from 2011 to 2013 in Shandong Province, China. Multiplex RT-PCR (SeeplexTM RV detection, Seegene) was performed to detected 12 respiratory viral pathogens.

Results

A total of 607 hospitalized patients were enrolled from 2011 to 2013. Viruses were identified in 35.75 % (217/607) of cases, including 78 influenza virus A and B (IVA and IVB), 47 para-influenza viruses (PIVs), 41 respiratory syncytial virus (RSV) and 38 adenovirus (ADV). For the children under 15 year old, the common detected viruses were influenza viruses, RSV, PIVS and ADV, while the principal respiratory viruses were human coronaviruses (HCoV), PIVs, influenza viruses for the old adults. Co-infections with multiple viruses were detected in 15.67 % of patients. Children under 5 years were more likely to have one or more detectable virus associated with their ARI. The peak of ARI caused by the respiratory viruses occurred in winter.

Conclusion

This study demonstrated respiratory viruses were the major cause of hospitalized ARI patients in Shandong Province, influenza virus was the most common detected, RSV was the highest incidence among the young children (≤5 years). These findings also gave a better understand of virus distribution among different age and seasons, which help to consider potential therapeutic approaches and develop effective prevention strategies for respiratory virus infection.
Literature
1.
go back to reference World Health Organization. World Health Report 2004 Statistical Anne. Geneva: WHO; 2004. World Health Organization. World Health Report 2004 Statistical Anne. Geneva: WHO; 2004.
2.
go back to reference Williams BG, Gouws E, Boschi-Pinto C, Bryce J, Dye C. Estimates of worldwide distribution of child deaths from acute respiratory infections. Lancet Infect Di. 2002;2:25–32.CrossRef Williams BG, Gouws E, Boschi-Pinto C, Bryce J, Dye C. Estimates of worldwide distribution of child deaths from acute respiratory infections. Lancet Infect Di. 2002;2:25–32.CrossRef
3.
go back to reference Mahony JB. Nucleic acid amplification-based diagnosis of respiratory virus infections. Expert Rev Anti Infect Ther. 2010;8:1273–92.CrossRefPubMed Mahony JB. Nucleic acid amplification-based diagnosis of respiratory virus infections. Expert Rev Anti Infect Ther. 2010;8:1273–92.CrossRefPubMed
4.
go back to reference Beck ET, Henrickson KJ. Molecular diagnosis of respiratory viruses. Future Microbiol. 2010;5:901–16.CrossRefPubMed Beck ET, Henrickson KJ. Molecular diagnosis of respiratory viruses. Future Microbiol. 2010;5:901–16.CrossRefPubMed
5.
go back to reference Monto AS. Occurrence of respiratory virus: time, place and person. Pediatr Infect Dis J. 2004;23:S58–64.CrossRefPubMed Monto AS. Occurrence of respiratory virus: time, place and person. Pediatr Infect Dis J. 2004;23:S58–64.CrossRefPubMed
6.
go back to reference Do AH, van Doorn HR, Nghiem MN, Bryant JE, Hoang TH, Do QH, et al. Viral etiologies of acute respiratory infections among hospitalized Vietnamese children in Ho Chi Minh City, 2004–2008. PLoS One. 2011;6((3):e18176.PubMedCentralCrossRefPubMed Do AH, van Doorn HR, Nghiem MN, Bryant JE, Hoang TH, Do QH, et al. Viral etiologies of acute respiratory infections among hospitalized Vietnamese children in Ho Chi Minh City, 2004–2008. PLoS One. 2011;6((3):e18176.PubMedCentralCrossRefPubMed
7.
go back to reference Laguna-Torres VA, S_anchez-Largaespada JF, Lorenzana I, Forshey B, Aguilar P, Jimenez M, et al. Influenza and other respiratory viruses in three Central American countries. Influenza Other Respi Viruses. 2011;5:123–34.CrossRef Laguna-Torres VA, S_anchez-Largaespada JF, Lorenzana I, Forshey B, Aguilar P, Jimenez M, et al. Influenza and other respiratory viruses in three Central American countries. Influenza Other Respi Viruses. 2011;5:123–34.CrossRef
8.
go back to reference He Y, Lin GY, Wang Q, Cai XY, Zhang YH, Lin CX, et al. A 3-year prospective study of the epidemiology of acute respiratory viral infections in hospitalized children in Shenzhen, China. Influenza Other Respi Viruses. 2014;8:443–51.CrossRef He Y, Lin GY, Wang Q, Cai XY, Zhang YH, Lin CX, et al. A 3-year prospective study of the epidemiology of acute respiratory viral infections in hospitalized children in Shenzhen, China. Influenza Other Respi Viruses. 2014;8:443–51.CrossRef
9.
go back to reference Huang G, Yu D, Mao N, Zhu Z, Zhang H, Jiang Z, et al. Viral etiology of acute respiratory infection in Gansu Province, China, 2011. PLoS One. 2013;8:e64254.PubMedCentralCrossRefPubMed Huang G, Yu D, Mao N, Zhu Z, Zhang H, Jiang Z, et al. Viral etiology of acute respiratory infection in Gansu Province, China, 2011. PLoS One. 2013;8:e64254.PubMedCentralCrossRefPubMed
10.
go back to reference Feng L, Li Z, Zhao S, Nair H, Lai S, Xu W, et al. Viral etiologies of hospitalized acute lower respiratory infection patients in China, 2009–2013. PLoS One. 2014;9:e99419.PubMedCentralCrossRefPubMed Feng L, Li Z, Zhao S, Nair H, Lai S, Xu W, et al. Viral etiologies of hospitalized acute lower respiratory infection patients in China, 2009–2013. PLoS One. 2014;9:e99419.PubMedCentralCrossRefPubMed
11.
go back to reference Yu X, Lu R, Wang Z, Zhu N, Wang W, Julian D, et al. Etiology and clinical characterization of respiratory virus infections in adult patients attending an emergency department in Beijing. PLoS One. 2012;7:e32174.PubMedCentralCrossRefPubMed Yu X, Lu R, Wang Z, Zhu N, Wang W, Julian D, et al. Etiology and clinical characterization of respiratory virus infections in adult patients attending an emergency department in Beijing. PLoS One. 2012;7:e32174.PubMedCentralCrossRefPubMed
12.
go back to reference Ren L, Gonzalez R, Wang Z, Xiang Z, Wang Y, Zhou H, et al. Prevalence of human respiratory viruses in adults with acute respiratory tract infections in Beijing, 2005–2007. Clin Microbiol Infect. 2007;15:1146–53.CrossRef Ren L, Gonzalez R, Wang Z, Xiang Z, Wang Y, Zhou H, et al. Prevalence of human respiratory viruses in adults with acute respiratory tract infections in Beijing, 2005–2007. Clin Microbiol Infect. 2007;15:1146–53.CrossRef
13.
go back to reference Sung RY, Chan PK, Tsen T, Li AM, Lam WY, Yeung AC, et al. Identification of viral and atypical bacterial pathogens in children hospitalized with acute respiratory infections in Hong Kong by multiplex PCR assays. J Med Virol. 2009;81:153–9.CrossRefPubMed Sung RY, Chan PK, Tsen T, Li AM, Lam WY, Yeung AC, et al. Identification of viral and atypical bacterial pathogens in children hospitalized with acute respiratory infections in Hong Kong by multiplex PCR assays. J Med Virol. 2009;81:153–9.CrossRefPubMed
14.
go back to reference Deng J, Ma Z, Huang W, Li C, Wang H, Zheng Y, et al. Respiratory virus multiplex RT-PCR assay sensitivities and influence factors in hospitalized children with lower respiratory tract infections. Virol Sin. 2013;28:97–102.CrossRefPubMed Deng J, Ma Z, Huang W, Li C, Wang H, Zheng Y, et al. Respiratory virus multiplex RT-PCR assay sensitivities and influence factors in hospitalized children with lower respiratory tract infections. Virol Sin. 2013;28:97–102.CrossRefPubMed
15.
go back to reference Pierangeli A, Gentile M, Di Marco P, Pagnotti P, Scagnolari C, Trombetti S, et al. Detection and typing by molecular techniques of respiratory viruses in children hospitalized for acute respiratory infection in Rome, Italy. J Med Virol. 2007;79:463–8.CrossRefPubMed Pierangeli A, Gentile M, Di Marco P, Pagnotti P, Scagnolari C, Trombetti S, et al. Detection and typing by molecular techniques of respiratory viruses in children hospitalized for acute respiratory infection in Rome, Italy. J Med Virol. 2007;79:463–8.CrossRefPubMed
16.
go back to reference Zuccotti G, Dilillo D, Zappa A, Galli E, Amendola A, Martinelli M, et al. Epidemiological and clinical features of respiratory viral infections in hospitalized children during the circulation of influenza virus A(H1N1) 2009. Influenza Other Respi Viruses. 2011;5:e528–34.CrossRef Zuccotti G, Dilillo D, Zappa A, Galli E, Amendola A, Martinelli M, et al. Epidemiological and clinical features of respiratory viral infections in hospitalized children during the circulation of influenza virus A(H1N1) 2009. Influenza Other Respi Viruses. 2011;5:e528–34.CrossRef
17.
go back to reference Oue’draogo S, Traore’ B, Nene Bi ZAB, Yonli FT, Kima D, Bonane P, et al. Viral etiology of respiratory tract infections in children at the pediatric hospital in Ouagadougou (Burkina Faso). PLoS One. 2014;9:e110435.CrossRef Oue’draogo S, Traore’ B, Nene Bi ZAB, Yonli FT, Kima D, Bonane P, et al. Viral etiology of respiratory tract infections in children at the pediatric hospital in Ouagadougou (Burkina Faso). PLoS One. 2014;9:e110435.CrossRef
18.
go back to reference Zhang C, Zhu N, Xie Z, Lu R, He B, Liu C, et al. Viral etiology and clinical profiles of children with severe acute respiratory infections in China. PLoS One. 2013;8(8):e72606.PubMedCentralCrossRefPubMed Zhang C, Zhu N, Xie Z, Lu R, He B, Liu C, et al. Viral etiology and clinical profiles of children with severe acute respiratory infections in China. PLoS One. 2013;8(8):e72606.PubMedCentralCrossRefPubMed
19.
go back to reference da Silva RC, da Silva MG, Rojas MA, Amorim AR, Couceiro JN, Lupi O, et al. Frequency of viral etiology in symptomatic adult upper respiratory tract infections. Braz J Infect Dis. 2015;19:30–5.CrossRefPubMed da Silva RC, da Silva MG, Rojas MA, Amorim AR, Couceiro JN, Lupi O, et al. Frequency of viral etiology in symptomatic adult upper respiratory tract infections. Braz J Infect Dis. 2015;19:30–5.CrossRefPubMed
20.
go back to reference Wangchuk S, Thapa B, Zangmo S, Jarman RG, Bhoomiboonchoo P, Gibbons RV. Influenza surveillance from November 2008 to 2011; including pandemic influenza A(H1N1)pdm09 in Bhutan. Influenza Other Respir Viruses. 2013;7(3):426–30.CrossRefPubMed Wangchuk S, Thapa B, Zangmo S, Jarman RG, Bhoomiboonchoo P, Gibbons RV. Influenza surveillance from November 2008 to 2011; including pandemic influenza A(H1N1)pdm09 in Bhutan. Influenza Other Respir Viruses. 2013;7(3):426–30.CrossRefPubMed
21.
go back to reference Song SX, Wang YL, Zhang SY, Liu T, Lin Y, Sun L, et al. Analysis on the epidemiology and etiology data of influenza illness cases in Shandong Province from 2009–2012. Modern Prev Med. 2014;41(19):3466–9 (in Chinese). Song SX, Wang YL, Zhang SY, Liu T, Lin Y, Sun L, et al. Analysis on the epidemiology and etiology data of influenza illness cases in Shandong Province from 2009–2012. Modern Prev Med. 2014;41(19):3466–9 (in Chinese).
22.
go back to reference Henrickson KJ. Parainfluenza viruses. Clin Miceobiol Rev. 2003;16:242–64.CrossRef Henrickson KJ. Parainfluenza viruses. Clin Miceobiol Rev. 2003;16:242–64.CrossRef
23.
go back to reference Glezen WP, Frank AL, Taber LH, Kasel JA. Parainfluenza virus type 3: seasonality and risk of infection and reinfection in young children. J Infect Dis. 1984;150:851–7.CrossRefPubMed Glezen WP, Frank AL, Taber LH, Kasel JA. Parainfluenza virus type 3: seasonality and risk of infection and reinfection in young children. J Infect Dis. 1984;150:851–7.CrossRefPubMed
24.
go back to reference Almajhdi FN, Alshaman MS, Amer HM. Molecular characterization and phylo-genetic analysis of human parainfluenza virus type 3 isolated from Saudi Arabia. J Med Virol. 2012;84:1304–11.CrossRefPubMed Almajhdi FN, Alshaman MS, Amer HM. Molecular characterization and phylo-genetic analysis of human parainfluenza virus type 3 isolated from Saudi Arabia. J Med Virol. 2012;84:1304–11.CrossRefPubMed
25.
go back to reference Khor C-S, Sam I-C, Hooi P-S, Quek K-F, Chan Y-F. Epidemiology and seasonality of respiratory viral infections in hospitalized children in Kuala Lumpur, Malaysia: a retrospective study of 27 years. BMC Pediatr. 2012;12:32.PubMedCentralCrossRefPubMed Khor C-S, Sam I-C, Hooi P-S, Quek K-F, Chan Y-F. Epidemiology and seasonality of respiratory viral infections in hospitalized children in Kuala Lumpur, Malaysia: a retrospective study of 27 years. BMC Pediatr. 2012;12:32.PubMedCentralCrossRefPubMed
26.
go back to reference Mathisen M, Strand TA, Sharma BN, Chandyo RK, Valentiner-Branth P, Basnet S, et al. Clinical presentation and severity of viral community-acquired pneumonia in young Nepalese children. Pediatr Infect Dis J. 2010;29:e1–6.CrossRefPubMed Mathisen M, Strand TA, Sharma BN, Chandyo RK, Valentiner-Branth P, Basnet S, et al. Clinical presentation and severity of viral community-acquired pneumonia in young Nepalese children. Pediatr Infect Dis J. 2010;29:e1–6.CrossRefPubMed
27.
go back to reference Olsen SJ, Thamthitiwat S, Chantra S, Chittaganpitch M, Fry AM, Simmerman JM, et al. Incidence of respiratory pathogens in persons hospitalized with pneumonia in two provinces in Thailand. Epidemiol. Infect. 2010;138(12):1–12.CrossRef Olsen SJ, Thamthitiwat S, Chantra S, Chittaganpitch M, Fry AM, Simmerman JM, et al. Incidence of respiratory pathogens in persons hospitalized with pneumonia in two provinces in Thailand. Epidemiol. Infect. 2010;138(12):1–12.CrossRef
28.
go back to reference Huo XX, Fang B, Liu LL, Yu HJ, Chen H, Zheng J, et al. Clinical and epidemiologic characteristics of respiratory syncytial virus infection among children aged <5 years, Jingzhou City, China, 2011. J Infect Dis. 2013;208 Suppl 3:184–8.CrossRef Huo XX, Fang B, Liu LL, Yu HJ, Chen H, Zheng J, et al. Clinical and epidemiologic characteristics of respiratory syncytial virus infection among children aged <5 years, Jingzhou City, China, 2011. J Infect Dis. 2013;208 Suppl 3:184–8.CrossRef
29.
go back to reference Zachariah P, Shah S, Gao D, Simoes EA. Predictors of the duration of the respiratory syncytial virus season. Pediatr Infect Dis J. 2009;28:772–6.CrossRefPubMed Zachariah P, Shah S, Gao D, Simoes EA. Predictors of the duration of the respiratory syncytial virus season. Pediatr Infect Dis J. 2009;28:772–6.CrossRefPubMed
30.
go back to reference Kaneko M, Watanabe J, Kuwahara M, Ueno E, Hida M, Kinoshita A, et al. Impact of respiratory syncytial virus infection as a cause of lower respiratory tract infection in children younger than 3 years of age in Japan. J Infect. 2002;44:240–3.CrossRefPubMed Kaneko M, Watanabe J, Kuwahara M, Ueno E, Hida M, Kinoshita A, et al. Impact of respiratory syncytial virus infection as a cause of lower respiratory tract infection in children younger than 3 years of age in Japan. J Infect. 2002;44:240–3.CrossRefPubMed
31.
go back to reference Bharaj P, Sullender WM, Kabra SK, Mani K, Cherian J, Tyagi V, et al. Respiratory viral infections detected by multiplex PCR among pediatric patients with lower respiratory tract infections seen at an urban hospital in Delhi from 2005 to 2007. Virol J. 2009;6:89.PubMedCentralCrossRefPubMed Bharaj P, Sullender WM, Kabra SK, Mani K, Cherian J, Tyagi V, et al. Respiratory viral infections detected by multiplex PCR among pediatric patients with lower respiratory tract infections seen at an urban hospital in Delhi from 2005 to 2007. Virol J. 2009;6:89.PubMedCentralCrossRefPubMed
32.
go back to reference Homaira N, Luby SP, Petri WA, Vainionpaa R, Rahman M, Hossain K, et al. Incidence of Respiratory Virus-Associated Pneumonia in Urban Poor Young Children of Dhaka, Bangladesh, 2009–2011. PLoS ONE 2012;7(2):e32056.PubMedCentralCrossRefPubMed Homaira N, Luby SP, Petri WA, Vainionpaa R, Rahman M, Hossain K, et al. Incidence of Respiratory Virus-Associated Pneumonia in Urban Poor Young Children of Dhaka, Bangladesh, 2009–2011. PLoS ONE 2012;7(2):e32056.PubMedCentralCrossRefPubMed
33.
go back to reference Greenberg SB. Update on rhinovirus and coronavirus infections. Semin Resoir Crit Care Med. 2011;32:433–46.CrossRef Greenberg SB. Update on rhinovirus and coronavirus infections. Semin Resoir Crit Care Med. 2011;32:433–46.CrossRef
34.
go back to reference Ren L, Gonzalez R, Xu J, Xiao Y, Li Y, Zhou H, et al. Prevalence of human coronaviruses in adults with acute respiratory tract infections in Beijing, China. J Med Virol. 2011;83:291–7.CrossRefPubMed Ren L, Gonzalez R, Xu J, Xiao Y, Li Y, Zhou H, et al. Prevalence of human coronaviruses in adults with acute respiratory tract infections in Beijing, China. J Med Virol. 2011;83:291–7.CrossRefPubMed
35.
go back to reference Gaunt ER, Hardie A, Claas ECJ, Simmonds P, Templeton KE. Epidemiology and clinical presentation of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J Clin Microbiol. 2010;48:2940–7.PubMedCentralCrossRefPubMed Gaunt ER, Hardie A, Claas ECJ, Simmonds P, Templeton KE. Epidemiology and clinical presentation of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method. J Clin Microbiol. 2010;48:2940–7.PubMedCentralCrossRefPubMed
36.
go back to reference Williams JV, Harris PA, Tollefson SJ, Halburnt-Rush LL, Pingsterhaus JM, Edwards KM, et al. Human metapneumovirus and lower respiratory tract disease in otherwise healthy infants and children. N Engl J Med. 2004;350:443e50. Williams JV, Harris PA, Tollefson SJ, Halburnt-Rush LL, Pingsterhaus JM, Edwards KM, et al. Human metapneumovirus and lower respiratory tract disease in otherwise healthy infants and children. N Engl J Med. 2004;350:443e50.
37.
go back to reference Do Carmo Debur M, Bordignon J, Santos Duarte dos CN, Vidal LR, Nogueira MB, de Almeida SM, et al. Acute respiratory infection by human metapneumovirus in children in southern Brazil. J Clin Virol. 2007;39:59e62. Do Carmo Debur M, Bordignon J, Santos Duarte dos CN, Vidal LR, Nogueira MB, de Almeida SM, et al. Acute respiratory infection by human metapneumovirus in children in southern Brazil. J Clin Virol. 2007;39:59e62.
Metadata
Title
Viral Etiology of acute respiratory tract infections in hospitalized children and adults in Shandong Province, China
Authors
Ti Liu
Zhong Li
Shengyang Zhang
Shaoxia Song
Wu Julong
Yi Lin
Nongjian Guo
Chunyan Xing
Aiqiang Xu
Zhenqiang Bi
Xianjun Wang
Publication date
01-12-2015
Publisher
BioMed Central
Published in
Virology Journal / Issue 1/2015
Electronic ISSN: 1743-422X
DOI
https://doi.org/10.1186/s12985-015-0388-z

Other articles of this Issue 1/2015

Virology Journal 1/2015 Go to the issue
Live Webinar | 27-06-2024 | 18:00 (CEST)

Keynote webinar | Spotlight on medication adherence

Live: Thursday 27th June 2024, 18:00-19:30 (CEST)

WHO estimates that half of all patients worldwide are non-adherent to their prescribed medication. The consequences of poor adherence can be catastrophic, on both the individual and population level.

Join our expert panel to discover why you need to understand the drivers of non-adherence in your patients, and how you can optimize medication adherence in your clinics to drastically improve patient outcomes.

Prof. Kevin Dolgin
Prof. Florian Limbourg
Prof. Anoop Chauhan
Developed by: Springer Medicine
Obesity Clinical Trial Summary

At a glance: The STEP trials

A round-up of the STEP phase 3 clinical trials evaluating semaglutide for weight loss in people with overweight or obesity.

Developed by: Springer Medicine