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Published in: Pediatric Rheumatology 1/2017

Open Access 01-12-2017 | Research article

Next Generation Sequencing identifies mutations in GNPTG gene as a cause of familial form of scleroderma-like disease

Authors: Abdelali Zrhidri, Saadia Amasdl, Jaber Lyahyai, Hanane Elouardi, Bouchra Chkirate, Laure Raymond, Grégory Egéa, Mohamed Taoudi, Said El Mouatassim, Abdelaziz Sefiani

Published in: Pediatric Rheumatology | Issue 1/2017

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Abstract

Background

Scleroderma is a multisystem disease, characterized by fibrosis of skin and internal organs, immune dysregulation, and vasculopathy. The etiology of the disease remains unknown, but it is likely multifactorial. However, the genetic basis for this condition is defined by multiple genes that have only modest effect on disease susceptibility.

Methods

Three Moroccan siblings, born from non-consanguineous Moroccan healthy parents were referred for genetic evaluation of familial scleroderma. Whole Exome Sequencing was performed in the proband and his parents, in addition to Sanger sequencing that was carried out to confirm the results obtained.

Results

Mutation analysis showed two compound heterozygous mutations c.196C>T in exon 4 and c.635_636delTT in exon 9 of GNPTG gene. Sanger sequencing confirmed these mutations in the affected patient and demonstrated that their parents are heterozygous carriers.

Conclusion

Our findings expand the mutation spectrum of the GNPTG gene and extend the knowledge of the phenotype–genotype correlation of Mucolipidosis Type III gamma. This report also highlights the diagnostic utility of Next Generation Sequencing particularly when the clinical presentation did not point to specific genes.
Literature
1.
go back to reference Rittner G, Schwanitz G, Baur MP, Black CM, Welsh KI, Kuhnl P, Rittner C. Family studies in scleroderma (systemic sclerosis) demonstrating an HLA-linked increased chromosomal breakage rate in cultured lymphocytes. Hum Genet. 1988;81:64–70.CrossRefPubMed Rittner G, Schwanitz G, Baur MP, Black CM, Welsh KI, Kuhnl P, Rittner C. Family studies in scleroderma (systemic sclerosis) demonstrating an HLA-linked increased chromosomal breakage rate in cultured lymphocytes. Hum Genet. 1988;81:64–70.CrossRefPubMed
2.
go back to reference Korman BD, Criswell LA. Recent advances in the genetics of systemic sclerosis: toward biological and clinical significance. Curr Rheumatol Rep. 2015;17:21.CrossRefPubMedPubMedCentral Korman BD, Criswell LA. Recent advances in the genetics of systemic sclerosis: toward biological and clinical significance. Curr Rheumatol Rep. 2015;17:21.CrossRefPubMedPubMedCentral
3.
go back to reference Mak AC, Tang PL, Cleveland C, Smith MH, Connolly MK, Katsumoto TR, Wolters PJ, Kwok PY, Criswell LA. Whole Exome Sequencing for identification of potential causal variants for diffuse cutaneous systemic sclerosis. Arthritis Rheumatol. 2016;68:2257–62.CrossRefPubMedPubMedCentral Mak AC, Tang PL, Cleveland C, Smith MH, Connolly MK, Katsumoto TR, Wolters PJ, Kwok PY, Criswell LA. Whole Exome Sequencing for identification of potential causal variants for diffuse cutaneous systemic sclerosis. Arthritis Rheumatol. 2016;68:2257–62.CrossRefPubMedPubMedCentral
4.
go back to reference Tappino B, Chuzhanova NA, Regis S, Dardis A, Corsolini F, Stroppiano M, Tonoli E, Beccari T, Rosano C, Mucha J, Blanco M, Szlago M, Di Rocco M, Cooper DN, Filocamo M. Molecular characterization of 22 novel UDP-N-acetylglucosamine-1-phosphate transferase alpha- and beta-subunit (GNPTAB) gene mutations causing mucolipidosis types IIalpha/beta and IIIalpha/beta in 46 patients. Hum Mutat. 2009;30:E956–73.CrossRefPubMed Tappino B, Chuzhanova NA, Regis S, Dardis A, Corsolini F, Stroppiano M, Tonoli E, Beccari T, Rosano C, Mucha J, Blanco M, Szlago M, Di Rocco M, Cooper DN, Filocamo M. Molecular characterization of 22 novel UDP-N-acetylglucosamine-1-phosphate transferase alpha- and beta-subunit (GNPTAB) gene mutations causing mucolipidosis types IIalpha/beta and IIIalpha/beta in 46 patients. Hum Mutat. 2009;30:E956–73.CrossRefPubMed
5.
go back to reference Coutinho MF, Prata MJ, Alves S. Mannose-6-phosphate pathway: a review on its role in lysosomal function and dysfunction. Mol Genet Metab. 2012;105:542–50.CrossRefPubMed Coutinho MF, Prata MJ, Alves S. Mannose-6-phosphate pathway: a review on its role in lysosomal function and dysfunction. Mol Genet Metab. 2012;105:542–50.CrossRefPubMed
6.
go back to reference Kollmann K, Pohl S, Marschner K, Encarnacao M, Sakwa I, Tiede S, Poorthuis BJ, Lubke T, Muller-Loennies S, Storch S, Braulke T. Mannose phosphorylation in health and disease. Eur J Cell Biol. 2010;89:117–23.CrossRefPubMed Kollmann K, Pohl S, Marschner K, Encarnacao M, Sakwa I, Tiede S, Poorthuis BJ, Lubke T, Muller-Loennies S, Storch S, Braulke T. Mannose phosphorylation in health and disease. Eur J Cell Biol. 2010;89:117–23.CrossRefPubMed
7.
go back to reference Ludwig T, Munier-Lehmann H, Bauer U, Hollinshead M, Ovitt C, Lobel P, Hoflack B. Differential sorting of lysosomal enzymes in mannose 6-phosphate receptor-deficient fibroblasts. EMBO J. 1994;13:3430–7.PubMedPubMedCentral Ludwig T, Munier-Lehmann H, Bauer U, Hollinshead M, Ovitt C, Lobel P, Hoflack B. Differential sorting of lysosomal enzymes in mannose 6-phosphate receptor-deficient fibroblasts. EMBO J. 1994;13:3430–7.PubMedPubMedCentral
8.
go back to reference Kelly TE, Thomas GH, Taylor HA Jr, McKusick VA, Sly WS, Glaser JH, Robinow M, Luzzatti L, Espiritu C, Feingold M, Bull MJ, Ashenhurst EM, Ives EJ. Mucolipidosis III (pseudo-Hurler polydystrophy): Clinical and laboratory studies in a series of 12 patients. Johns Hopkins Med J. 1975;137:156–75.PubMed Kelly TE, Thomas GH, Taylor HA Jr, McKusick VA, Sly WS, Glaser JH, Robinow M, Luzzatti L, Espiritu C, Feingold M, Bull MJ, Ashenhurst EM, Ives EJ. Mucolipidosis III (pseudo-Hurler polydystrophy): Clinical and laboratory studies in a series of 12 patients. Johns Hopkins Med J. 1975;137:156–75.PubMed
9.
go back to reference Cury GK, Matte U, Artigalas O, Alegra T, Velho RV, Sperb F, Burin MG, Ribeiro EM, Lourenco CM, Kim CA, Valadares ER, Galera MF, Acosta AX, Schwartz IV. Mucolipidosis II and III alpha/beta in Brazil: analysis of the GNPTAB gene. Gene. 2013;524:59–64.CrossRefPubMed Cury GK, Matte U, Artigalas O, Alegra T, Velho RV, Sperb F, Burin MG, Ribeiro EM, Lourenco CM, Kim CA, Valadares ER, Galera MF, Acosta AX, Schwartz IV. Mucolipidosis II and III alpha/beta in Brazil: analysis of the GNPTAB gene. Gene. 2013;524:59–64.CrossRefPubMed
10.
go back to reference Song J, Lee DS, Cho HI, Kim JQ, Cho TJ. Biochemical characteristics of a Korean patient with mucolipidosis III (pseudo-Hurler polydystrophy). J Korean Med Sci. 2003;18:722–6.CrossRefPubMedPubMedCentral Song J, Lee DS, Cho HI, Kim JQ, Cho TJ. Biochemical characteristics of a Korean patient with mucolipidosis III (pseudo-Hurler polydystrophy). J Korean Med Sci. 2003;18:722–6.CrossRefPubMedPubMedCentral
11.
go back to reference Tylki-Szymanska A, Czartoryska B, Groener JE, Lugowska A. Clinical variability in mucolipidosis III (pseudo-Hurler polydystrophy). Am J Med Genet. 2002;108:214–8.CrossRefPubMed Tylki-Szymanska A, Czartoryska B, Groener JE, Lugowska A. Clinical variability in mucolipidosis III (pseudo-Hurler polydystrophy). Am J Med Genet. 2002;108:214–8.CrossRefPubMed
12.
go back to reference Liu S, Zhang W, Shi H, Meng Y, Qiu Z. Three novel homozygous mutations in the GNPTG gene that cause mucolipidosis type III gamma. Gene. 2014;535:294–8.CrossRefPubMed Liu S, Zhang W, Shi H, Meng Y, Qiu Z. Three novel homozygous mutations in the GNPTG gene that cause mucolipidosis type III gamma. Gene. 2014;535:294–8.CrossRefPubMed
13.
go back to reference KASAPKARA ÇS, AKÇABOY M, EROĞLU FK, DERİNKUYU BE. Mucolipidosis Type III: A Rare Disease in Differential Diagnosis of Joint Stiffness in Pediatric Rheumatology. Arch Rheumatol. 2018;33:i–vi. KASAPKARA ÇS, AKÇABOY M, EROĞLU FK, DERİNKUYU BE. Mucolipidosis Type III: A Rare Disease in Differential Diagnosis of Joint Stiffness in Pediatric Rheumatology. Arch Rheumatol. 2018;33:i–vi.
14.
go back to reference Pantoja Zarza L, Diez Morrondo C. Skeletal deformities in mucolipidosis III. Reumatologia Clinica. 2014;10:340–1.CrossRefPubMed Pantoja Zarza L, Diez Morrondo C. Skeletal deformities in mucolipidosis III. Reumatologia Clinica. 2014;10:340–1.CrossRefPubMed
15.
go back to reference Herd JK, Dvorak AD, Wiltse HE, Eisen JD, Kress BC, Miller AL. Mucolipidosis type III. Multiple elevated serum and urine enzyme activities. Am J Dis Child. 1978;132:1181–6.CrossRefPubMed Herd JK, Dvorak AD, Wiltse HE, Eisen JD, Kress BC, Miller AL. Mucolipidosis type III. Multiple elevated serum and urine enzyme activities. Am J Dis Child. 1978;132:1181–6.CrossRefPubMed
16.
go back to reference Kerr DA, Memoli VA, Cathey SS, Harris BT. Mucolipidosis type III alpha/beta: the first characterization of this rare disease by autopsy. Arch Pathol Lab Med. 2011;135:503–10.PubMedPubMedCentral Kerr DA, Memoli VA, Cathey SS, Harris BT. Mucolipidosis type III alpha/beta: the first characterization of this rare disease by autopsy. Arch Pathol Lab Med. 2011;135:503–10.PubMedPubMedCentral
17.
go back to reference Avouac J, Guerini H, Wipff J, Assous N, Chevrot A, Kahan A, Allanore Y. Radiological hand involvement in systemic sclerosis. Ann Rheum Dis. 2006;65:1088–92.CrossRefPubMedPubMedCentral Avouac J, Guerini H, Wipff J, Assous N, Chevrot A, Kahan A, Allanore Y. Radiological hand involvement in systemic sclerosis. Ann Rheum Dis. 2006;65:1088–92.CrossRefPubMedPubMedCentral
18.
go back to reference Randone SB, Guiducci S, Cerinic MM. Musculoskeletal involvement in systemic sclerosis. Best Pract Res Clin Rheumatol. 2008;22:339–50.CrossRefPubMed Randone SB, Guiducci S, Cerinic MM. Musculoskeletal involvement in systemic sclerosis. Best Pract Res Clin Rheumatol. 2008;22:339–50.CrossRefPubMed
19.
go back to reference Lorand V, Czirjak L, Minier T. Musculoskeletal involvement in systemic sclerosis. Presse Med. 2014;43:e315–28.CrossRefPubMed Lorand V, Czirjak L, Minier T. Musculoskeletal involvement in systemic sclerosis. Presse Med. 2014;43:e315–28.CrossRefPubMed
20.
go back to reference Cavallasca JA, Laborde HA, Araujo MB, Nasswetter GG. Multiple avascular necrosis in a patient with systemic lupus erythematosus/systemic sclerosis overlap syndrome. Clin Rheumatol. 2005;24:406–8.CrossRefPubMed Cavallasca JA, Laborde HA, Araujo MB, Nasswetter GG. Multiple avascular necrosis in a patient with systemic lupus erythematosus/systemic sclerosis overlap syndrome. Clin Rheumatol. 2005;24:406–8.CrossRefPubMed
21.
go back to reference Fossaluzza V, Peressini A, De Vita S. Multifocal ischemic necrosis of bone in scleroderma. Clin Rheumatol. 1991;10:95–7.CrossRefPubMed Fossaluzza V, Peressini A, De Vita S. Multifocal ischemic necrosis of bone in scleroderma. Clin Rheumatol. 1991;10:95–7.CrossRefPubMed
22.
go back to reference Bruni C, Guiducci S, Bellando-Randone S, Matucci-Cerinic M. Avascular bone necrosis: an underestimated complication of systemic sclerosis. Semin Arthritis Rheum. 2017;47:e3–5.CrossRefPubMed Bruni C, Guiducci S, Bellando-Randone S, Matucci-Cerinic M. Avascular bone necrosis: an underestimated complication of systemic sclerosis. Semin Arthritis Rheum. 2017;47:e3–5.CrossRefPubMed
23.
go back to reference Raas-Rothschild A, Bargal R, Goldman O, Ben-Asher E, Groener JE, Toutain A, Stemmer E, Ben-Neriah Z, Flusser H, Beemer FA, Penttinen M, Olender T, Rein AJ, Bach G, Zeigler M. Genomic organisation of the UDP-N-acetylglucosamine-1-phosphotransferase gamma subunit (GNPTAG) and its mutations in mucolipidosis III. J Med Genet. 2004;41:e52.CrossRefPubMedPubMedCentral Raas-Rothschild A, Bargal R, Goldman O, Ben-Asher E, Groener JE, Toutain A, Stemmer E, Ben-Neriah Z, Flusser H, Beemer FA, Penttinen M, Olender T, Rein AJ, Bach G, Zeigler M. Genomic organisation of the UDP-N-acetylglucosamine-1-phosphotransferase gamma subunit (GNPTAG) and its mutations in mucolipidosis III. J Med Genet. 2004;41:e52.CrossRefPubMedPubMedCentral
Metadata
Title
Next Generation Sequencing identifies mutations in GNPTG gene as a cause of familial form of scleroderma-like disease
Authors
Abdelali Zrhidri
Saadia Amasdl
Jaber Lyahyai
Hanane Elouardi
Bouchra Chkirate
Laure Raymond
Grégory Egéa
Mohamed Taoudi
Said El Mouatassim
Abdelaziz Sefiani
Publication date
01-12-2017
Publisher
BioMed Central
Published in
Pediatric Rheumatology / Issue 1/2017
Electronic ISSN: 1546-0096
DOI
https://doi.org/10.1186/s12969-017-0200-2

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