Skip to main content
Top
Published in: Critical Care 1/2010

Open Access 01-02-2010 | Research

Identification of complex metabolic states in critically injured patients using bioinformatic cluster analysis

Authors: Mitchell J Cohen, Adam D Grossman, Diane Morabito, M Margaret Knudson, Atul J Butte, Geoffrey T Manley

Published in: Critical Care | Issue 1/2010

Login to get access

Abstract

Introduction

Advances in technology have made extensive monitoring of patient physiology the standard of care in intensive care units (ICUs). While many systems exist to compile these data, there has been no systematic multivariate analysis and categorization across patient physiological data. The sheer volume and complexity of these data make pattern recognition or identification of patient state difficult. Hierarchical cluster analysis allows visualization of high dimensional data and enables pattern recognition and identification of physiologic patient states. We hypothesized that processing of multivariate data using hierarchical clustering techniques would allow identification of otherwise hidden patient physiologic patterns that would be predictive of outcome.

Methods

Multivariate physiologic and ventilator data were collected continuously using a multimodal bioinformatics system in the surgical ICU at San Francisco General Hospital. These data were incorporated with non-continuous data and stored on a server in the ICU. A hierarchical clustering algorithm grouped each minute of data into 1 of 10 clusters. Clusters were correlated with outcome measures including incidence of infection, multiple organ failure (MOF), and mortality.

Results

We identified 10 clusters, which we defined as distinct patient states. While patients transitioned between states, they spent significant amounts of time in each. Clusters were enriched for our outcome measures: 2 of the 10 states were enriched for infection, 6 of 10 were enriched for MOF, and 3 of 10 were enriched for death. Further analysis of correlations between pairs of variables within each cluster reveals significant differences in physiology between clusters.

Conclusions

Here we show for the first time the feasibility of clustering physiological measurements to identify clinically relevant patient states after trauma. These results demonstrate that hierarchical clustering techniques can be useful for visualizing complex multivariate data and may provide new insights for the care of critically injured patients.
Appendix
Available only for authorised users
Literature
1.
go back to reference Kapetanovic IM, Rosenfeld S, Izmirlian G: Overview of commonly used bioinformatics methods and their applications. Ann N Y Acad Sci. 2004, 1020: 10-21. 10.1196/annals.1310.003.CrossRefPubMed Kapetanovic IM, Rosenfeld S, Izmirlian G: Overview of commonly used bioinformatics methods and their applications. Ann N Y Acad Sci. 2004, 1020: 10-21. 10.1196/annals.1310.003.CrossRefPubMed
2.
go back to reference Kim JH: Bioinformatics and genomic medicine. Genet Med. 2002, 4: 62S-65S. 10.1097/00125817-200211001-00013.CrossRefPubMed Kim JH: Bioinformatics and genomic medicine. Genet Med. 2002, 4: 62S-65S. 10.1097/00125817-200211001-00013.CrossRefPubMed
3.
go back to reference Chen DP, Weber SC, Constantinou PS, Ferris TA, Lowe HJ, Butte AJ: Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation. Pac Symp Biocomput;. 2008, 243-254. Chen DP, Weber SC, Constantinou PS, Ferris TA, Lowe HJ, Butte AJ: Novel integration of hospital electronic medical records and gene expression measurements to identify genetic markers of maturation. Pac Symp Biocomput;. 2008, 243-254.
4.
go back to reference Ikossi D, Knudson MM, Morabito D, Cohen M: Continuous muscle tissue oxygen monitoring as a guide for resuscitation in critically injured patients: A prospective observational study. J Trauma. 2006, 61: 780-788. 10.1097/01.ta.0000239500.71419.58.CrossRefPubMed Ikossi D, Knudson MM, Morabito D, Cohen M: Continuous muscle tissue oxygen monitoring as a guide for resuscitation in critically injured patients: A prospective observational study. J Trauma. 2006, 61: 780-788. 10.1097/01.ta.0000239500.71419.58.CrossRefPubMed
5.
go back to reference Ciesla DJ, Moore EE, Johnson JL, Burch JM, Cothren CC, Sauaia A: A 12-year prospective study of postinjury multiple organ failure: has anything changed?. Arch Surg. 2005, 140: 432-438. 10.1001/archsurg.140.5.432. discussion 438-440CrossRefPubMed Ciesla DJ, Moore EE, Johnson JL, Burch JM, Cothren CC, Sauaia A: A 12-year prospective study of postinjury multiple organ failure: has anything changed?. Arch Surg. 2005, 140: 432-438. 10.1001/archsurg.140.5.432. discussion 438-440CrossRefPubMed
6.
go back to reference Hemphill JC, Barton CW, Morabito D, Manley GT: Influence of data resolution and interpolation method on assessment of secondary brain insults in neurocritical care. Physiol Meas. 2005, 26: 373-386. 10.1088/0967-3334/26/4/004.CrossRefPubMed Hemphill JC, Barton CW, Morabito D, Manley GT: Influence of data resolution and interpolation method on assessment of secondary brain insults in neurocritical care. Physiol Meas. 2005, 26: 373-386. 10.1088/0967-3334/26/4/004.CrossRefPubMed
7.
go back to reference Abad-Grau MM, Ierache J, Cervino C, Sebastiani P: Evolution and challenges in the design of computational systems for triage assistance. J Biomed Inform. 2008, 41: 432-441. 10.1016/j.jbi.2008.01.007.PubMedCentralCrossRefPubMed Abad-Grau MM, Ierache J, Cervino C, Sebastiani P: Evolution and challenges in the design of computational systems for triage assistance. J Biomed Inform. 2008, 41: 432-441. 10.1016/j.jbi.2008.01.007.PubMedCentralCrossRefPubMed
8.
go back to reference Zhang Y, Szolovits P: Patient-specific learning in real time for adaptive monitoring in critical care. J Biomed Inform. 2008, 41: 452-460. 10.1016/j.jbi.2008.03.011.PubMedCentralCrossRefPubMed Zhang Y, Szolovits P: Patient-specific learning in real time for adaptive monitoring in critical care. J Biomed Inform. 2008, 41: 452-460. 10.1016/j.jbi.2008.03.011.PubMedCentralCrossRefPubMed
9.
go back to reference Dabrowski GP, Steinberg SM, Ferrara JJ, Flint LM: A critical assessment of endpoints of shock resuscitation. Surg Clin North Am. 2000, 80: 825-844. 10.1016/S0039-6109(05)70098-0.CrossRefPubMed Dabrowski GP, Steinberg SM, Ferrara JJ, Flint LM: A critical assessment of endpoints of shock resuscitation. Surg Clin North Am. 2000, 80: 825-844. 10.1016/S0039-6109(05)70098-0.CrossRefPubMed
10.
go back to reference Chen L, McKenna TM, Reisner AT, Gribok A, Reifman J: Decision tool for the early diagnosis of trauma patient hypovolemia. J Biomed Inform. 2008, 41: 469-478. 10.1016/j.jbi.2007.12.002.CrossRefPubMed Chen L, McKenna TM, Reisner AT, Gribok A, Reifman J: Decision tool for the early diagnosis of trauma patient hypovolemia. J Biomed Inform. 2008, 41: 469-478. 10.1016/j.jbi.2007.12.002.CrossRefPubMed
11.
go back to reference Sauaia A, Moore FA, Moore EE, Norris JM, Lezotte DC, Hamman RF: Multiple organ failure can be predicted as early as 12 hours after injury. J Trauma. 1998, 45: 291-301. 10.1097/00005373-199808000-00014. discussion 301-293CrossRefPubMed Sauaia A, Moore FA, Moore EE, Norris JM, Lezotte DC, Hamman RF: Multiple organ failure can be predicted as early as 12 hours after injury. J Trauma. 1998, 45: 291-301. 10.1097/00005373-199808000-00014. discussion 301-293CrossRefPubMed
12.
go back to reference Rixen D, Siegel JH, Abu-Salih A, Bertolini M, Panagakos F, Espina N: Physiologic state severity classification as an indicator of posttrauma cytokine response. Shock. 1995, 4: 27-38. 10.1097/00024382-199507000-00004.CrossRefPubMed Rixen D, Siegel JH, Abu-Salih A, Bertolini M, Panagakos F, Espina N: Physiologic state severity classification as an indicator of posttrauma cytokine response. Shock. 1995, 4: 27-38. 10.1097/00024382-199507000-00004.CrossRefPubMed
13.
go back to reference Rixen D, Siegel JH, Friedman HP: "Sepsis/SIRS," physiologic classification, severity stratification, relation to cytokine elaboration and outcome prediction in posttrauma critical illness. J Trauma. 1996, 41: 581-598. 10.1097/00005373-199610000-00001.CrossRefPubMed Rixen D, Siegel JH, Friedman HP: "Sepsis/SIRS," physiologic classification, severity stratification, relation to cytokine elaboration and outcome prediction in posttrauma critical illness. J Trauma. 1996, 41: 581-598. 10.1097/00005373-199610000-00001.CrossRefPubMed
14.
go back to reference Nelson DW, Bellander BM, Maccallum RM, Axelsson J, Alm M, Wallin M, Weitzberg E, Rudehill A: Cerebral microdialysis of patients with severe traumatic brain injury exhibits highly individualistic patterns as visualized by cluster analysis with self-organizing maps. Crit Care Med. 2004, 32: 2428-2436. 10.1097/01.CCM.0000147688.08813.9C.CrossRefPubMed Nelson DW, Bellander BM, Maccallum RM, Axelsson J, Alm M, Wallin M, Weitzberg E, Rudehill A: Cerebral microdialysis of patients with severe traumatic brain injury exhibits highly individualistic patterns as visualized by cluster analysis with self-organizing maps. Crit Care Med. 2004, 32: 2428-2436. 10.1097/01.CCM.0000147688.08813.9C.CrossRefPubMed
15.
go back to reference Sorani MD, Hemphill JC, Morabito D, Rosenthal G, Manley GT: New approaches to physiological informatics in neurocritical care. Neurocrit Care. 2007, 7: 45-52. 10.1007/s12028-007-0043-7.CrossRefPubMed Sorani MD, Hemphill JC, Morabito D, Rosenthal G, Manley GT: New approaches to physiological informatics in neurocritical care. Neurocrit Care. 2007, 7: 45-52. 10.1007/s12028-007-0043-7.CrossRefPubMed
Metadata
Title
Identification of complex metabolic states in critically injured patients using bioinformatic cluster analysis
Authors
Mitchell J Cohen
Adam D Grossman
Diane Morabito
M Margaret Knudson
Atul J Butte
Geoffrey T Manley
Publication date
01-02-2010
Publisher
BioMed Central
Published in
Critical Care / Issue 1/2010
Electronic ISSN: 1364-8535
DOI
https://doi.org/10.1186/cc8864

Other articles of this Issue 1/2010

Critical Care 1/2010 Go to the issue