Skip to main content
Top
Published in: Clinical and Translational Allergy 1/2013

Open Access 01-12-2013 | Research

A qPCR-based metric of Th2 airway inflammation in asthma

Authors: Nirav R Bhakta, Owen D Solberg, Christine P Nguyen, Cindy N Nguyen, Joseph R Arron, John V Fahy, Prescott G Woodruff

Published in: Clinical and Translational Allergy | Issue 1/2013

Login to get access

Abstract

Background

Using microarray profiling of airway epithelial cells, we previously identified a Th2-high molecular phenotype of asthma based on expression of periostin, CLCA1 and serpinB2 and characterized by specific inflammatory, remodeling, and treatment response features. The goal of the current study was to develop a qPCR-based assay of Th2 inflammation to overcome the limitations of microarray-based methods.

Methods

Airway epithelial brushings were obtained by bronchoscopy from two clinical studies comprising 44 healthy controls and 62 subjects with asthma, 39 of whom were studied before and after a standardized 8 week course of inhaled corticosteroids (ICS). The qPCR-based expression of periostin, CLCA1 and serpinB2 were combined into a single metric.

Results

In asthma, the three-gene-mean of periostin, CLCA1 and serpinB2 correlated with FeNO (r = 0.75, p = 0.0002), blood eosinophils (r = 0.58, p = 0.003) and PC20 methacholine (r = -0.65, p = 0.0006), but not total serum IgE (r = 0.33, p = 0.1). Higher baseline three-gene-mean correlated with greater improvement in FEV1 with ICS at 2, 4 and 8 weeks (all p < 0.05). By ROC analysis, the area under the curve (AUC) of the three-gene-mean for FEV1 improvement with ICS at 4 and 8 weeks was 0.94 and 0.87, respectively, which are higher than the AUCs of FeNO, blood eosinophils, IgE or PC20. Th2 airway inflammation as measured by this three-gene-mean also had predictive capacity for an improvement in symptoms.

Conclusions

The three-gene-mean of periostin, CLCA1 and serpinB2 in airway epithelial brushings identifies Th2-high and low populations, is correlated with other Th2 biomarkers, and performs well for prediction of FEV1 improvement with ICS. The three-gene-mean provides a measurement of Th2 airway inflammation that is clinically relevant and that can serve as a valuable tool to evaluate non-invasive biomarkers to predict treatment responses to existing and emerging asthma therapies.
Appendix
Available only for authorised users
Literature
1.
go back to reference Bhakta NR, Woodruff PG: Human asthma phenotypes: from the clinic, to cytokines, and back again. Immunol Rev. 2011, 242: 220-232. 10.1111/j.1600-065X.2011.01032.x.PubMedCentralCrossRefPubMed Bhakta NR, Woodruff PG: Human asthma phenotypes: from the clinic, to cytokines, and back again. Immunol Rev. 2011, 242: 220-232. 10.1111/j.1600-065X.2011.01032.x.PubMedCentralCrossRefPubMed
2.
go back to reference Hanania NA, Alpan O, Hamilos DL, Condemi JJ, Reyes-Rivera I, Zhu J, Rosen KE, Eisner MD, Wong DA, Busse W: Omalizumab in severe allergic asthma inadequately controlled with standard therapy: a randomized trial. Ann Intern Med. 2011, 154: 573-582. 10.7326/0003-4819-154-9-201105030-00002.CrossRefPubMed Hanania NA, Alpan O, Hamilos DL, Condemi JJ, Reyes-Rivera I, Zhu J, Rosen KE, Eisner MD, Wong DA, Busse W: Omalizumab in severe allergic asthma inadequately controlled with standard therapy: a randomized trial. Ann Intern Med. 2011, 154: 573-582. 10.7326/0003-4819-154-9-201105030-00002.CrossRefPubMed
3.
go back to reference Haldar P, Brightling CE, Hargadon B, Gupta S, Monteiro W, Sousa A, Marshall RP, Bradding P, Green RH, Wardlaw AJ, Pavord ID: Mepolizumab and exacerbations of refractory eosinophilic asthma. N Engl J Med. 2009, 360: 973-984. 10.1056/NEJMoa0808991.PubMedCentralCrossRefPubMed Haldar P, Brightling CE, Hargadon B, Gupta S, Monteiro W, Sousa A, Marshall RP, Bradding P, Green RH, Wardlaw AJ, Pavord ID: Mepolizumab and exacerbations of refractory eosinophilic asthma. N Engl J Med. 2009, 360: 973-984. 10.1056/NEJMoa0808991.PubMedCentralCrossRefPubMed
4.
go back to reference Nair P, Pizzichini MM, Kjarsgaard M, Inman MD, Efthimiadis A, Pizzichini E, Hargreave FE, O'Byrne PM: Mepolizumab for prednisone-dependent asthma with sputum eosinophilia. N Engl J Med. 2009, 360: 985-993. 10.1056/NEJMoa0805435.CrossRefPubMed Nair P, Pizzichini MM, Kjarsgaard M, Inman MD, Efthimiadis A, Pizzichini E, Hargreave FE, O'Byrne PM: Mepolizumab for prednisone-dependent asthma with sputum eosinophilia. N Engl J Med. 2009, 360: 985-993. 10.1056/NEJMoa0805435.CrossRefPubMed
5.
go back to reference Pavord ID, Korn S, Howarth P, Bleecker ER, Buhl R, Keene ON, Ortega H, Chanez P: Mepolizumab for severe eosinophilic asthma (DREAM): a multicentre, double-blind, placebo-controlled trial. Lancet. 2012, 380: 651-659. 10.1016/S0140-6736(12)60988-X.CrossRefPubMed Pavord ID, Korn S, Howarth P, Bleecker ER, Buhl R, Keene ON, Ortega H, Chanez P: Mepolizumab for severe eosinophilic asthma (DREAM): a multicentre, double-blind, placebo-controlled trial. Lancet. 2012, 380: 651-659. 10.1016/S0140-6736(12)60988-X.CrossRefPubMed
6.
go back to reference Szefler SJ, Martin RJ, King TS, Boushey HA, Cherniack RM, Chinchilli VM, Craig TJ, Dolovich M, Drazen JM, Fagan JK, Fahy JV, Fish JE, Ford JG, Israel E, Kiley J, Kraft M, Lazarus SC, Lemanske RF, Mauger E, Peters SP, Sorkness CA, Asthma Clinical Research Network of the National Heart Lung, and Blood Institute: Significant variability in response to inhaled corticosteroids for persistent asthma. J Allergy Clin Immunol. 2002, 109: 410-418. 10.1067/mai.2002.122635.CrossRefPubMed Szefler SJ, Martin RJ, King TS, Boushey HA, Cherniack RM, Chinchilli VM, Craig TJ, Dolovich M, Drazen JM, Fagan JK, Fahy JV, Fish JE, Ford JG, Israel E, Kiley J, Kraft M, Lazarus SC, Lemanske RF, Mauger E, Peters SP, Sorkness CA, Asthma Clinical Research Network of the National Heart Lung, and Blood Institute: Significant variability in response to inhaled corticosteroids for persistent asthma. J Allergy Clin Immunol. 2002, 109: 410-418. 10.1067/mai.2002.122635.CrossRefPubMed
7.
go back to reference Martin RJ, Szefler SJ, King TS, Kraft M, Boushey HA, Chinchilli VM, Craig TJ, Dimango EA, Deykin A, Fahy JV, Israel E, Lazarus SC, Lemanske RF, Leone FT, Pesola GR, Peters SP, Sorkness CA, Szwejbka LA, Wechsler ME, National Heart, Lung, and Blood Institute's Asthma Clinical Research Center: The Predicting Response to Inhaled Corticosteroid Efficacy (PRICE) trial. J Allergy Clin Immunol. 2007, 119: 73-80. 10.1016/j.jaci.2006.10.035.PubMedCentralCrossRefPubMed Martin RJ, Szefler SJ, King TS, Kraft M, Boushey HA, Chinchilli VM, Craig TJ, Dimango EA, Deykin A, Fahy JV, Israel E, Lazarus SC, Lemanske RF, Leone FT, Pesola GR, Peters SP, Sorkness CA, Szwejbka LA, Wechsler ME, National Heart, Lung, and Blood Institute's Asthma Clinical Research Center: The Predicting Response to Inhaled Corticosteroid Efficacy (PRICE) trial. J Allergy Clin Immunol. 2007, 119: 73-80. 10.1016/j.jaci.2006.10.035.PubMedCentralCrossRefPubMed
8.
go back to reference Bateman ED, Boushey HA, Bousquet J, Busse WW, Clark TJ, Pauwels RA, Pedersen SE, GOAL Investigators Group: Can guideline-defined asthma control be achieved? The Gaining Optimal Asthma ControL study. Am J Respir Crit Care Med. 2004, 170: 836-844. 10.1164/rccm.200401-033OC.CrossRefPubMed Bateman ED, Boushey HA, Bousquet J, Busse WW, Clark TJ, Pauwels RA, Pedersen SE, GOAL Investigators Group: Can guideline-defined asthma control be achieved? The Gaining Optimal Asthma ControL study. Am J Respir Crit Care Med. 2004, 170: 836-844. 10.1164/rccm.200401-033OC.CrossRefPubMed
9.
go back to reference Woodruff PG, Boushey HA, Dolganov GM, Barker CS, Yang YH, Donnelly S, Ellwanger A, Sidhu SS, Dao-Pick TP, Pantoja C, Erle DJ, Yamamoto KR, Fahy JV: Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids. Proc Natl Acad Sci USA. 2007, 104: 15858-15863. 10.1073/pnas.0707413104.PubMedCentralCrossRefPubMed Woodruff PG, Boushey HA, Dolganov GM, Barker CS, Yang YH, Donnelly S, Ellwanger A, Sidhu SS, Dao-Pick TP, Pantoja C, Erle DJ, Yamamoto KR, Fahy JV: Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids. Proc Natl Acad Sci USA. 2007, 104: 15858-15863. 10.1073/pnas.0707413104.PubMedCentralCrossRefPubMed
10.
go back to reference Choy DF, Modrek B, Abbas AR, Kummerfeld S, Clark HF, Wu LC, Fedorowicz G, Modrusan Z, Fahy JV, Woodruff PG, Arron JR: Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways. J Immunol. 2011, 186: 1861-1869. 10.4049/jimmunol.1002568.PubMedCentralCrossRefPubMed Choy DF, Modrek B, Abbas AR, Kummerfeld S, Clark HF, Wu LC, Fedorowicz G, Modrusan Z, Fahy JV, Woodruff PG, Arron JR: Gene expression patterns of Th2 inflammation and intercellular communication in asthmatic airways. J Immunol. 2011, 186: 1861-1869. 10.4049/jimmunol.1002568.PubMedCentralCrossRefPubMed
11.
go back to reference Solberg OD, Ostrin EJ, Love MI, Peng JC, Bhakta NR, Hou L, Nguyen C, Solon M, Nguyen C, Barczak AJ, Zlock LT, Blagev DP, Finkbeiner WE, Ansel KM, Arron JR, Erle DJ, Woodruff PG: Airway Epithelial miRNA Expression is Altered in Asthma. Am J Respir Crit Care Med. 2012, 186: 965-974. 10.1164/rccm.201201-0027OC.PubMedCentralCrossRefPubMed Solberg OD, Ostrin EJ, Love MI, Peng JC, Bhakta NR, Hou L, Nguyen C, Solon M, Nguyen C, Barczak AJ, Zlock LT, Blagev DP, Finkbeiner WE, Ansel KM, Arron JR, Erle DJ, Woodruff PG: Airway Epithelial miRNA Expression is Altered in Asthma. Am J Respir Crit Care Med. 2012, 186: 965-974. 10.1164/rccm.201201-0027OC.PubMedCentralCrossRefPubMed
12.
go back to reference Dolganov GM, Woodruff PG, Novikov AA, Zhang Y, Ferrando RE, Szubin R, Fahy JV: A novel method of gene transcript profiling in airway biopsy homogenates reveals increased expression of a Na + -K + -Cl- cotransporter (NKCC1) in asthmatic subjects. Genome Res. 2001, 11: 1473-1483. 10.1101/gr.191301.CrossRefPubMed Dolganov GM, Woodruff PG, Novikov AA, Zhang Y, Ferrando RE, Szubin R, Fahy JV: A novel method of gene transcript profiling in airway biopsy homogenates reveals increased expression of a Na + -K + -Cl- cotransporter (NKCC1) in asthmatic subjects. Genome Res. 2001, 11: 1473-1483. 10.1101/gr.191301.CrossRefPubMed
13.
go back to reference Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J: qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007, 8: R19-10.1186/gb-2007-8-2-r19.PubMedCentralCrossRefPubMed Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J: qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007, 8: R19-10.1186/gb-2007-8-2-r19.PubMedCentralCrossRefPubMed
14.
go back to reference Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3: RESEARCH0034-PubMedCentralCrossRefPubMed Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3: RESEARCH0034-PubMedCentralCrossRefPubMed
15.
go back to reference R Core Team: R: A Language and Environment for Statistical Computing. 2012, Vienna, Austria: R Foundation for Statistical Computing R Core Team: R: A Language and Environment for Statistical Computing. 2012, Vienna, Austria: R Foundation for Statistical Computing
16.
go back to reference Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez JC, Muller M: pROC: an open-source package for R and S + to analyze and compare ROC curves. BMC Bioinformatics. 2011, 12: 77-10.1186/1471-2105-12-77.PubMedCentralCrossRefPubMed Robin X, Turck N, Hainard A, Tiberti N, Lisacek F, Sanchez JC, Muller M: pROC: an open-source package for R and S + to analyze and compare ROC curves. BMC Bioinformatics. 2011, 12: 77-10.1186/1471-2105-12-77.PubMedCentralCrossRefPubMed
17.
go back to reference Wickham H: ggplot2: elegant graphics for data analysis. 2009, New York: SpringerCrossRef Wickham H: ggplot2: elegant graphics for data analysis. 2009, New York: SpringerCrossRef
18.
go back to reference Pellegrino R, Viegi G, Brusasco V, Crapo RO, Burgos F, Casaburi R, Coates A, van der Grinten CP, Gustafsson P, Hankinson J, Jensen R, Johnson DC, MacIntyre N, McKay R, Miller MR, Navajas D, Pedersen OF, Wanger J: Interpretative strategies for lung function tests. Eur Respir J. 2005, 26: 948-968. 10.1183/09031936.05.00035205.CrossRefPubMed Pellegrino R, Viegi G, Brusasco V, Crapo RO, Burgos F, Casaburi R, Coates A, van der Grinten CP, Gustafsson P, Hankinson J, Jensen R, Johnson DC, MacIntyre N, McKay R, Miller MR, Navajas D, Pedersen OF, Wanger J: Interpretative strategies for lung function tests. Eur Respir J. 2005, 26: 948-968. 10.1183/09031936.05.00035205.CrossRefPubMed
19.
go back to reference Sont JK, Willems LN, Bel EH, van Krieken JH, Vandenbroucke JP, Sterk PJ: Clinical control and histopathologic outcome of asthma when using airway hyperresponsiveness as an additional guide to long-term treatment. The AMPUL Study Group. Am J Respir Crit Care Med. 1999, 159: 1043-1051. 10.1164/ajrccm.159.4.9806052.CrossRefPubMed Sont JK, Willems LN, Bel EH, van Krieken JH, Vandenbroucke JP, Sterk PJ: Clinical control and histopathologic outcome of asthma when using airway hyperresponsiveness as an additional guide to long-term treatment. The AMPUL Study Group. Am J Respir Crit Care Med. 1999, 159: 1043-1051. 10.1164/ajrccm.159.4.9806052.CrossRefPubMed
20.
go back to reference Vermeulen J, Pattyn F, De Preter K, Vercruysse L, Derveaux S, Mestdagh P, Lefever S, Hellemans J, Speleman F, Vandesompele J: External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data. Nucleic Acids Res. 2009, 37: e138-10.1093/nar/gkp721.PubMedCentralCrossRefPubMed Vermeulen J, Pattyn F, De Preter K, Vercruysse L, Derveaux S, Mestdagh P, Lefever S, Hellemans J, Speleman F, Vandesompele J: External oligonucleotide standards enable cross laboratory comparison and exchange of real-time quantitative PCR data. Nucleic Acids Res. 2009, 37: e138-10.1093/nar/gkp721.PubMedCentralCrossRefPubMed
21.
go back to reference Chibana K, Trudeau JB, Mustovich AT, Hu H, Zhao J, Balzar S, Chu HW, Wenzel SE: IL-13 induced increases in nitrite levels are primarily driven by increases in inducible nitric oxide synthase as compared with effects on arginases in human primary bronchial epithelial cells. Clin Exp Allergy. 2008, 38: 936-946. 10.1111/j.1365-2222.2008.02969.x.CrossRefPubMed Chibana K, Trudeau JB, Mustovich AT, Hu H, Zhao J, Balzar S, Chu HW, Wenzel SE: IL-13 induced increases in nitrite levels are primarily driven by increases in inducible nitric oxide synthase as compared with effects on arginases in human primary bronchial epithelial cells. Clin Exp Allergy. 2008, 38: 936-946. 10.1111/j.1365-2222.2008.02969.x.CrossRefPubMed
22.
go back to reference Jia G, Erickson RW, Choy DF, Mosesova S, Wu LC, Solberg OD, Shikotra A, Carter R, Audusseau S, Hamid Q, Bradding P, Fahy JV, Woodruff PG, Harris JM, Arron JR, Bronchoscopic Exploratory Research Study of Biomarkers in Corticosteroid-refractory Asthma (BOBCAT) Study Group: Periostin is a systemic biomarker of eosinophilic airway inflammation in asthmatic patients. J Allergy Clin Immunol. 2012, 130: 647-654. 10.1016/j.jaci.2012.06.025. e10PubMedCentralCrossRefPubMed Jia G, Erickson RW, Choy DF, Mosesova S, Wu LC, Solberg OD, Shikotra A, Carter R, Audusseau S, Hamid Q, Bradding P, Fahy JV, Woodruff PG, Harris JM, Arron JR, Bronchoscopic Exploratory Research Study of Biomarkers in Corticosteroid-refractory Asthma (BOBCAT) Study Group: Periostin is a systemic biomarker of eosinophilic airway inflammation in asthmatic patients. J Allergy Clin Immunol. 2012, 130: 647-654. 10.1016/j.jaci.2012.06.025. e10PubMedCentralCrossRefPubMed
23.
go back to reference Corren J, Lemanske RF, Hanania NA, Korenblat PE, Parsey MV, Arron JR, Harris JM, Scheerens H, Wu LC, Su Z, Mosesova S, Eisner MD, Bohen SP, Matthews JG: Lebrikizumab treatment in adults with asthma. N Engl J Med. 2011, 365: 1088-1098. 10.1056/NEJMoa1106469.CrossRefPubMed Corren J, Lemanske RF, Hanania NA, Korenblat PE, Parsey MV, Arron JR, Harris JM, Scheerens H, Wu LC, Su Z, Mosesova S, Eisner MD, Bohen SP, Matthews JG: Lebrikizumab treatment in adults with asthma. N Engl J Med. 2011, 365: 1088-1098. 10.1056/NEJMoa1106469.CrossRefPubMed
24.
go back to reference Petsky HL, Cates CJ, Lasserson TJ, Li AM, Turner C, Kynaston JA, Chang AB: A systematic review and meta-analysis: tailoring asthma treatment on eosinophilic markers (exhaled nitric oxide or sputum eosinophils). Thorax. 2012, 67: 199-208. 10.1136/thx.2010.135574.CrossRefPubMed Petsky HL, Cates CJ, Lasserson TJ, Li AM, Turner C, Kynaston JA, Chang AB: A systematic review and meta-analysis: tailoring asthma treatment on eosinophilic markers (exhaled nitric oxide or sputum eosinophils). Thorax. 2012, 67: 199-208. 10.1136/thx.2010.135574.CrossRefPubMed
25.
go back to reference McGrath KW, Icitovic N, Boushey HA, Lazarus SC, Sutherland ER, Chinchilli VM, Fahy JV, Asthma Clinical Research Network of the National Heart, Lung, and Blood Institute: A large subgroup of mild-to-moderate asthma is persistently noneosinophilic. Am J Respir Crit Care Med. 2012, 185: 612-619. 10.1164/rccm.201109-1640OC.PubMedCentralCrossRefPubMed McGrath KW, Icitovic N, Boushey HA, Lazarus SC, Sutherland ER, Chinchilli VM, Fahy JV, Asthma Clinical Research Network of the National Heart, Lung, and Blood Institute: A large subgroup of mild-to-moderate asthma is persistently noneosinophilic. Am J Respir Crit Care Med. 2012, 185: 612-619. 10.1164/rccm.201109-1640OC.PubMedCentralCrossRefPubMed
27.
go back to reference Black JL, Roth M: Intrinsic asthma: is it intrinsic to the smooth muscle?. Clin Exp Allergy. 2009, 39: 962-965. 10.1111/j.1365-2222.2009.03270.x.CrossRefPubMed Black JL, Roth M: Intrinsic asthma: is it intrinsic to the smooth muscle?. Clin Exp Allergy. 2009, 39: 962-965. 10.1111/j.1365-2222.2009.03270.x.CrossRefPubMed
28.
go back to reference Alcorn JF, Crowe CR, Kolls JK: TH17 cells in asthma and COPD. Annu Rev Physiol. 2010, 72: 495-516. 10.1146/annurev-physiol-021909-135926.CrossRefPubMed Alcorn JF, Crowe CR, Kolls JK: TH17 cells in asthma and COPD. Annu Rev Physiol. 2010, 72: 495-516. 10.1146/annurev-physiol-021909-135926.CrossRefPubMed
Metadata
Title
A qPCR-based metric of Th2 airway inflammation in asthma
Authors
Nirav R Bhakta
Owen D Solberg
Christine P Nguyen
Cindy N Nguyen
Joseph R Arron
John V Fahy
Prescott G Woodruff
Publication date
01-12-2013
Publisher
BioMed Central
Published in
Clinical and Translational Allergy / Issue 1/2013
Electronic ISSN: 2045-7022
DOI
https://doi.org/10.1186/2045-7022-3-24

Other articles of this Issue 1/2013

Clinical and Translational Allergy 1/2013 Go to the issue