Skip to main content
Top
Published in: Diagnostic Pathology 1/2006

Open Access 01-12-2006 | Research

Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the Internet

Authors: Klaus Kayser, Dominik Radziszowski, Piotr Bzdyl, Rainer Sommer, Gian Kayser

Published in: Diagnostic Pathology | Issue 1/2006

Login to get access

Abstract

Aims

To develop and implement an automated virtual slide screening system that distinguishes normal histological findings and several tissue – based crude (texture – based) diagnoses.

Theoretical considerations

Virtual slide technology has to handle and transfer images of GB Bytes in size. The performance of tissue based diagnosis can be separated into a) a sampling procedure to allocate the slide area containing the most significant diagnostic information, and b) the evaluation of the diagnosis obtained from the information present in the selected area. Nyquist's theorem that is broadly applied in acoustics, can also serve for quality assurance in image information analysis, especially to preset the accuracy of sampling. Texture – based diagnosis can be performed with recursive formulas that do not require a detailed segmentation procedure. The obtained results will then be transferred into a "self-learning" discrimination system that adjusts itself to changes of image parameters such as brightness, shading, or contrast.

Methods

Non-overlapping compartments of the original virtual slide (image) will be chosen at random and according to Nyquist's theorem (predefined error-rate). The compartments will be standardized by local filter operations, and are subject for texture analysis. The texture analysis is performed on the basis of a recursive formula that computes the median gray value and the local noise distribution. The computations will be performed at different magnifications that are adjusted to the most frequently used objectives (*2, *4.5, *10, *20, *40). The obtained data are statistically analyzed in a hierarchical sequence, and in relation to the clinical significance of the diagnosis.

Results

The system has been tested with a total of 896 lung cancer cases that include the diagnoses groups: cohort (1) normal lung – cancer; cancer subdivided: cohort (2) small cell lung cancer – non small cell lung cancer; non small cell lung cancer subdivided: cohort (3) squamous cell carcinoma – adenocarcinoma – large cell carcinoma. The system can classify all diagnoses of the cohorts (1) and (2) correctly in 100%, those of cohort (3) in more than 95%. The percentage of the selected area can be limited to only 10% of the original image without any increased error rate.

Conclusion

The developed system is a fast and reliable procedure to fulfill all requirements for an automated "pre-screening" of virtual slides in lung pathology.
Appendix
Available only for authorised users
Literature
1.
go back to reference Kayser K, Kayser G: Virtual Microscopy and Automated Diagnosis. Virtual Microscopy and Virtual Slides in Teaching, Diagnosis and Research. Edited by: Gu J, Ogilvie RW. 2005, Boca Raton: Taylor & Francis Kayser K, Kayser G: Virtual Microscopy and Automated Diagnosis. Virtual Microscopy and Virtual Slides in Teaching, Diagnosis and Research. Edited by: Gu J, Ogilvie RW. 2005, Boca Raton: Taylor & Francis
2.
go back to reference Kayser K: Application of structural pattern recognition in histopathology. Syntactic and structural pattern recognition. NATO ASI Series F: Computer and system sciences. Edited by: Ferraté G, Pavlidis T, Sanfeliu A, Bunke H. 1988, Berlin Heidelberg New York: Springer, 45: 115-135.CrossRef Kayser K: Application of structural pattern recognition in histopathology. Syntactic and structural pattern recognition. NATO ASI Series F: Computer and system sciences. Edited by: Ferraté G, Pavlidis T, Sanfeliu A, Bunke H. 1988, Berlin Heidelberg New York: Springer, 45: 115-135.CrossRef
3.
go back to reference Wen-Ming Leong FJ: An automated diagnostic system for tubular carcinoma of the breast – a model for computer-based cancer diagnosis. 2002, Thesis: Oxford Wen-Ming Leong FJ: An automated diagnostic system for tubular carcinoma of the breast – a model for computer-based cancer diagnosis. 2002, Thesis: Oxford
4.
go back to reference Kayser K, Szymas J, Weinstein R: Telepathology, Telecommunication, Electronic Education and Publication in Pathology. 1999, New York: Springer Verlag Kayser K, Szymas J, Weinstein R: Telepathology, Telecommunication, Electronic Education and Publication in Pathology. 1999, New York: Springer Verlag
5.
go back to reference Kayser K, Szymas J, Weinstein RS: Telepathology and Telemedicine – Communication, Electronic Education and Publication in e-Health. 2005, Berlin: Interdisciplinary Medical Publication Kayser K, Szymas J, Weinstein RS: Telepathology and Telemedicine – Communication, Electronic Education and Publication in e-Health. 2005, Berlin: Interdisciplinary Medical Publication
6.
go back to reference Bartels PH: Computer-generated diagnosis and image analysis. An overview. Cancer. 1992, 69: 1636-1638.CrossRefPubMed Bartels PH: Computer-generated diagnosis and image analysis. An overview. Cancer. 1992, 69: 1636-1638.CrossRefPubMed
7.
go back to reference Bartels PH, Weber JE, Duckstein L: Machine learning in quantitative histopathology. Anal Quant Cytol Histol. 1988, 10: 299-306.PubMed Bartels PH, Weber JE, Duckstein L: Machine learning in quantitative histopathology. Anal Quant Cytol Histol. 1988, 10: 299-306.PubMed
8.
go back to reference Kayser G, Radziszowski D, Bzdyl P, Sommer R, Kayser K: Theory and implementation of an electronic automated measurement system for images obtained from immunohistochemically stained slides (EAMUSTM) AQCH. 2005, Kayser G, Radziszowski D, Bzdyl P, Sommer R, Kayser K: Theory and implementation of an electronic automated measurement system for images obtained from immunohistochemically stained slides (EAMUSTM) AQCH. 2005,
9.
go back to reference Prewitt JMS: Object enhancement and extraction. Picture processing and Psycopictories. Edited by: Lipkin L, Rosenfeld A. 1970, New York: Academic Press, 75-149. Prewitt JMS: Object enhancement and extraction. Picture processing and Psycopictories. Edited by: Lipkin L, Rosenfeld A. 1970, New York: Academic Press, 75-149.
10.
go back to reference Voss K, Süße H: Praktische Bildverarbeitung. 1991, München, Wien: Carl Hanser Verlag Voss K, Süße H: Praktische Bildverarbeitung. 1991, München, Wien: Carl Hanser Verlag
11.
go back to reference Kayser K, Hufnagl P, Kayser G, Zink S: Stratified sampling: Basic ideas and application in pathology. Elec J Pathol Histol. 1999, 5: 994-1008. Kayser K, Hufnagl P, Kayser G, Zink S: Stratified sampling: Basic ideas and application in pathology. Elec J Pathol Histol. 1999, 5: 994-1008.
12.
go back to reference Bartels PH, Montironi R, Duval da Silva V, Hamilton PW, Thompson D, Vaught L, Bartels HG: Tissue architecture analysis in prostate cancer and its precursors: An innovative approach to computerized histometry. Eur Urol. 1999, 3: 484-491. 10.1159/000019884.CrossRef Bartels PH, Montironi R, Duval da Silva V, Hamilton PW, Thompson D, Vaught L, Bartels HG: Tissue architecture analysis in prostate cancer and its precursors: An innovative approach to computerized histometry. Eur Urol. 1999, 3: 484-491. 10.1159/000019884.CrossRef
13.
go back to reference Hamilton PW, Bartels PH, Montironi R, Anderson NH, Thompson D, Diamond J, Trewin S, Bharucha H: Automated histometry in quantitative prostate pathology. Anal Quant Cytol Histol. 1998, 20: 443-60.PubMed Hamilton PW, Bartels PH, Montironi R, Anderson NH, Thompson D, Diamond J, Trewin S, Bharucha H: Automated histometry in quantitative prostate pathology. Anal Quant Cytol Histol. 1998, 20: 443-60.PubMed
14.
go back to reference Hamilton PW, Bartels PH, Thompson D, Anderson NH, Montironi R, Sloan JM: Automated location of dysplastic fields in colorectal histology using image texture analysis. J Pathol. 1997, 182: 68-75. 10.1002/(SICI)1096-9896(199705)182:1<68::AID-PATH811>3.0.CO;2-N.CrossRefPubMed Hamilton PW, Bartels PH, Thompson D, Anderson NH, Montironi R, Sloan JM: Automated location of dysplastic fields in colorectal histology using image texture analysis. J Pathol. 1997, 182: 68-75. 10.1002/(SICI)1096-9896(199705)182:1<68::AID-PATH811>3.0.CO;2-N.CrossRefPubMed
15.
go back to reference Höffgen H, Kayser K, Schlegel W, Rummel HH: Low resolution structure analysis of corpus endometrium. Path Res Pract. 1983, 178: 131-134. Höffgen H, Kayser K, Schlegel W, Rummel HH: Low resolution structure analysis of corpus endometrium. Path Res Pract. 1983, 178: 131-134.
16.
go back to reference Kayser G, Kayser K: Telepathology in Europe. Virtual Microscopy and Virtual Slides in Teaching, Diagnosis and Research. Edited by: Gu J, Ogilvie RW. 2005, Boca Raton: Taylor & Francis Kayser G, Kayser K: Telepathology in Europe. Virtual Microscopy and Virtual Slides in Teaching, Diagnosis and Research. Edited by: Gu J, Ogilvie RW. 2005, Boca Raton: Taylor & Francis
17.
go back to reference Kayser K, Berthold S, Eichhorn S, Kayser C, Ziehms S, Gabius HJ: Application of Attributed Graphs in Diagnostic Pathology. Ana Quant Cytol Histol. 1996, 18: 286-292. Kayser K, Berthold S, Eichhorn S, Kayser C, Ziehms S, Gabius HJ: Application of Attributed Graphs in Diagnostic Pathology. Ana Quant Cytol Histol. 1996, 18: 286-292.
18.
go back to reference van Diest P, Kayser K, Meijer GA, Baak JP: Syntactic structure analysis. Pathologica. 1995, 87: 255-262.PubMed van Diest P, Kayser K, Meijer GA, Baak JP: Syntactic structure analysis. Pathologica. 1995, 87: 255-262.PubMed
19.
go back to reference Zahn CT: Graph-theoretical methods for detection and describing gestalt clusters. IEEE Trans. 1971, C-20: 68-86. Zahn CT: Graph-theoretical methods for detection and describing gestalt clusters. IEEE Trans. 1971, C-20: 68-86.
20.
go back to reference Kayser K, Schlegel W: Pattern recognition in histopathology: Basic considerations. Methods Inform Med. 1982, 21: 15-22. Kayser K, Schlegel W: Pattern recognition in histopathology: Basic considerations. Methods Inform Med. 1982, 21: 15-22.
21.
go back to reference Kayser K, Gabius HJ: The application of thermodynamic principles to histochemical and morphometric tissue research: principles and practical outline with focus on the glycosciences. Cell Tissue Res. 1999, 296: 443-55. 10.1007/s004410051305.CrossRefPubMed Kayser K, Gabius HJ: The application of thermodynamic principles to histochemical and morphometric tissue research: principles and practical outline with focus on the glycosciences. Cell Tissue Res. 1999, 296: 443-55. 10.1007/s004410051305.CrossRefPubMed
22.
go back to reference Kayser K, Richter B, Stryciak R, Gabius H-J: Parameters derived from integrated nuclear fluorescence, syntactic structure analysis, and vascularization in human lung carcinomas. Analytical Cellular Pathology. 1997, 15: 73-83.CrossRefPubMed Kayser K, Richter B, Stryciak R, Gabius H-J: Parameters derived from integrated nuclear fluorescence, syntactic structure analysis, and vascularization in human lung carcinomas. Analytical Cellular Pathology. 1997, 15: 73-83.CrossRefPubMed
23.
go back to reference Tamura H, More S, Yamawaki T: Texture features corresponding to visual perception. IEEE Trans on Systems, Man, and Cybernetics (SMC). 1978, 8: 460-473.CrossRef Tamura H, More S, Yamawaki T: Texture features corresponding to visual perception. IEEE Trans on Systems, Man, and Cybernetics (SMC). 1978, 8: 460-473.CrossRef
24.
go back to reference Leong FJ, McGee JO: Automated complete slide digitization: a medium for simultaneous viewing by multiple pathologists. J Pathol. 2001, 195: 508-14. 10.1002/path.972.CrossRefPubMed Leong FJ, McGee JO: Automated complete slide digitization: a medium for simultaneous viewing by multiple pathologists. J Pathol. 2001, 195: 508-14. 10.1002/path.972.CrossRefPubMed
25.
go back to reference Gundersen HJ: Stereology of arbitrary particles. A review of unbiased number and size estimators and the presentation of some new ones, in memory of William R. Thompson. J Microsc. 1986, 143: 3-45.CrossRefPubMed Gundersen HJ: Stereology of arbitrary particles. A review of unbiased number and size estimators and the presentation of some new ones, in memory of William R. Thompson. J Microsc. 1986, 143: 3-45.CrossRefPubMed
26.
go back to reference Kayser K, Kayser G, Eichhorn S, Biechele U, Altiner M, Kaltner H, Zeng FY, Vlasova EV, Bovin NV, Gabius HJ: Association of prognosis in surgically treated lung cancer patients with cytometric, histometric and ligand histochemical properties: with an emphasis on structural entropy. Anal Quant Cytol Histol. 1998, 20: 313-320.PubMed Kayser K, Kayser G, Eichhorn S, Biechele U, Altiner M, Kaltner H, Zeng FY, Vlasova EV, Bovin NV, Gabius HJ: Association of prognosis in surgically treated lung cancer patients with cytometric, histometric and ligand histochemical properties: with an emphasis on structural entropy. Anal Quant Cytol Histol. 1998, 20: 313-320.PubMed
27.
go back to reference Leong FJ, Graham AK, Schwarzmann P, McGee JO: Clinical trial of telepathology as an alternative modality in breast histopathology quality assurance. Telemed J E Health. 2000, 6: 373-377. 10.1089/15305620050503834.CrossRefPubMed Leong FJ, Graham AK, Schwarzmann P, McGee JO: Clinical trial of telepathology as an alternative modality in breast histopathology quality assurance. Telemed J E Health. 2000, 6: 373-377. 10.1089/15305620050503834.CrossRefPubMed
Metadata
Title
Towards an automated virtual slide screening: theoretical considerations and practical experiences of automated tissue-based virtual diagnosis to be implemented in the Internet
Authors
Klaus Kayser
Dominik Radziszowski
Piotr Bzdyl
Rainer Sommer
Gian Kayser
Publication date
01-12-2006
Publisher
BioMed Central
Published in
Diagnostic Pathology / Issue 1/2006
Electronic ISSN: 1746-1596
DOI
https://doi.org/10.1186/1746-1596-1-10

Other articles of this Issue 1/2006

Diagnostic Pathology 1/2006 Go to the issue