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Published in: Virology Journal 1/2014

Open Access 01-12-2014 | Review

Acanthamoeba polyphaga mimivirus and other giant viruses: an open field to outstanding discoveries

Authors: Jônatas S Abrahão, Fábio P Dornas, Lorena CF Silva, Gabriel M Almeida, Paulo VM Boratto, Phillipe Colson, Bernard La Scola, Erna G Kroon

Published in: Virology Journal | Issue 1/2014

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Abstract

In 2003, Acanthamoeba polyphaga mimivirus (APMV) was first described and began to impact researchers around the world, due to its structural and genetic complexity. This virus founded the family Mimiviridae. In recent years, several new giant viruses have been isolated from different environments and specimens. Giant virus research is in its initial phase and information that may arise in the coming years may change current conceptions of life, diversity and evolution. Thus, this review aims to condense the studies conducted so far about the features and peculiarities of APMV, from its discovery to its clinical relevance.
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Literature
1.
go back to reference Rohwer F, Prangishvili D, Lindell D: Roles of viruses in the environment. Environ Microbiol 2009, 11: 2771-2774.PubMedCrossRef Rohwer F, Prangishvili D, Lindell D: Roles of viruses in the environment. Environ Microbiol 2009, 11: 2771-2774.PubMedCrossRef
2.
go back to reference Breitbart M, Miyake JH, Rohwer F: Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol Lett 2004, 236: 249-256.PubMedCrossRef Breitbart M, Miyake JH, Rohwer F: Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol Lett 2004, 236: 249-256.PubMedCrossRef
3.
go back to reference Short CM, Suttle CA: Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl Environ Microbiol 2005, 71: 480-486.PubMedPubMedCentralCrossRef Short CM, Suttle CA: Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl Environ Microbiol 2005, 71: 480-486.PubMedPubMedCentralCrossRef
5.
go back to reference La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Raoult D: A giant virus in amoebae. Science 2003, 299: 2033.PubMedCrossRef La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Raoult D: A giant virus in amoebae. Science 2003, 299: 2033.PubMedCrossRef
6.
7.
go back to reference Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H: Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J 2013, 7: 1678-1695.PubMedPubMedCentralCrossRef Hingamp P, Grimsley N, Acinas SG, Clerissi C, Subirana L, Poulain J, Ferrera I, Sarmento H, Villar E, Lima-Mendez G, Faust K, Sunagawa S, Claverie JM, Moreau H, Desdevises Y, Bork P, Raes J, de Vargas C, Karsenti E, Kandels-Lewis S, Jaillon O, Not F, Pesant S, Wincker P, Ogata H: Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes. ISME J 2013, 7: 1678-1695.PubMedPubMedCentralCrossRef
8.
go back to reference Kroon EG, Mota BE, Abrahao JS, da Fonseca FG, de Souza Trindade G: Zoonotic Brazilian Vaccinia virus: from field to therapy. Antiviral Res 2011, 92: 150-163.PubMedCrossRef Kroon EG, Mota BE, Abrahao JS, da Fonseca FG, de Souza Trindade G: Zoonotic Brazilian Vaccinia virus: from field to therapy. Antiviral Res 2011, 92: 150-163.PubMedCrossRef
9.
go back to reference Claverie JM, Abergel C: Mimivirus: the emerging paradox of quasi-autonomous viruses. Trends Genet 2010, 26: 431-437.PubMedCrossRef Claverie JM, Abergel C: Mimivirus: the emerging paradox of quasi-autonomous viruses. Trends Genet 2010, 26: 431-437.PubMedCrossRef
10.
go back to reference Claverie JM, Abergel C, Ogata H: Mimivirus. Curr Top Microbiol Immunol 2009, 328: 89-121.PubMed Claverie JM, Abergel C, Ogata H: Mimivirus. Curr Top Microbiol Immunol 2009, 328: 89-121.PubMed
11.
go back to reference La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D: The virophage as a unique parasite of the giant mimivirus. Nature 2008, 455: 100-104.PubMedCrossRef La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D: The virophage as a unique parasite of the giant mimivirus. Nature 2008, 455: 100-104.PubMedCrossRef
12.
13.
go back to reference Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM: Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci U S A 2011, 108: 17486-17491.PubMedPubMedCentralCrossRef Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM: Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci U S A 2011, 108: 17486-17491.PubMedPubMedCentralCrossRef
14.
go back to reference Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D: Provirophages and transpovirons as the diverse mobilome of giant viruses. Proc Natl Acad Sci U S A 2012, 109: 18078-18083.PubMedPubMedCentralCrossRef Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D: Provirophages and transpovirons as the diverse mobilome of giant viruses. Proc Natl Acad Sci U S A 2012, 109: 18078-18083.PubMedPubMedCentralCrossRef
15.
go back to reference Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin E: Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage. Genome Biol Evol 2012, 4: 1324-1330.PubMedPubMedCentralCrossRef Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin E: Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage. Genome Biol Evol 2012, 4: 1324-1330.PubMedPubMedCentralCrossRef
16.
go back to reference Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B: First isolation of a giant virus from wild Hirudo medicinalis leech: Mimiviridae isolation in Hirudo medicinalis. Viruses 2013, 5: 2920-2930.PubMedPubMedCentralCrossRef Boughalmi M, Pagnier I, Aherfi S, Colson P, Raoult D, La Scola B: First isolation of a giant virus from wild Hirudo medicinalis leech: Mimiviridae isolation in Hirudo medicinalis. Viruses 2013, 5: 2920-2930.PubMedPubMedCentralCrossRef
17.
go back to reference Yoosuf N, Pagnier I, Fournous G, Robert C, La Scola B, Raoult D, Colson P: Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae. Virus Genes 2014, 48: 218-223.PubMedCrossRef Yoosuf N, Pagnier I, Fournous G, Robert C, La Scola B, Raoult D, Colson P: Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae. Virus Genes 2014, 48: 218-223.PubMedCrossRef
18.
go back to reference Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, La Scola B, Koonin EV, Raoult D: Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci U S A 2009, 106: 21848-21853.PubMedPubMedCentralCrossRef Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, La Scola B, Koonin EV, Raoult D: Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci U S A 2009, 106: 21848-21853.PubMedPubMedCentralCrossRef
19.
go back to reference Philippe N, Legendre M, Doutre G, Coute Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C: Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 2013, 341: 281-286.PubMedCrossRef Philippe N, Legendre M, Doutre G, Coute Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C: Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 2013, 341: 281-286.PubMedCrossRef
20.
go back to reference Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie J: Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A 2014, 111: 4274-4279.PubMedPubMedCentralCrossRef Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Couté Y, Rivkina E, Abergel C, Claverie J: Thirty-thousand-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci U S A 2014, 111: 4274-4279.PubMedPubMedCentralCrossRef
22.
go back to reference Colson P, Gimenez G, Boyer M, Fournous G, Raoult D: The giant Cafeteria roenbergensis virus that infects a widespread marine phagocytic protist is a new member of the fourth domain of Life. PLoS One 2011, 6: e18935.PubMedPubMedCentralCrossRef Colson P, Gimenez G, Boyer M, Fournous G, Raoult D: The giant Cafeteria roenbergensis virus that infects a widespread marine phagocytic protist is a new member of the fourth domain of Life. PLoS One 2011, 6: e18935.PubMedPubMedCentralCrossRef
23.
go back to reference Desnues C, Boyer M, Raoult D: Sputnik, a virophage infecting the viral domain of life. Adv Virus Res 2012, 82: 63-89.PubMedCrossRef Desnues C, Boyer M, Raoult D: Sputnik, a virophage infecting the viral domain of life. Adv Virus Res 2012, 82: 63-89.PubMedCrossRef
24.
go back to reference Colson P, de Lamballerie X, Fournous G, Raoult D: Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales. Intervirology 2012, 55: 321-332.PubMedCrossRef Colson P, de Lamballerie X, Fournous G, Raoult D: Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales. Intervirology 2012, 55: 321-332.PubMedCrossRef
25.
go back to reference Nasir A, Kim KM, Caetano-Anolles G: Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya. BMC Evol Biol 2012, 12: 156.PubMedPubMedCentralCrossRef Nasir A, Kim KM, Caetano-Anolles G: Giant viruses coexisted with the cellular ancestors and represent a distinct supergroup along with superkingdoms Archaea, Bacteria and Eukarya. BMC Evol Biol 2012, 12: 156.PubMedPubMedCentralCrossRef
26.
go back to reference Boyer M, Madoui MA, Gimenez G, La Scola B, Raoult D: Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4 domain of life including giant viruses. PLoS One 2010, 5: e15530.PubMedPubMedCentralCrossRef Boyer M, Madoui MA, Gimenez G, La Scola B, Raoult D: Phylogenetic and phyletic studies of informational genes in genomes highlight existence of a 4 domain of life including giant viruses. PLoS One 2010, 5: e15530.PubMedPubMedCentralCrossRef
27.
go back to reference Colson P, De Lamballerie X, Yutin N, Asgari S, Bigot Y, Bideshi DK, Cheng XW, Federici BA, Van Etten JL, Koonin EV, La Scola B, Raoult D: “Megavirales”, a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses. Arch Virol 2013, 158: 2517-2521.PubMedPubMedCentralCrossRef Colson P, De Lamballerie X, Yutin N, Asgari S, Bigot Y, Bideshi DK, Cheng XW, Federici BA, Van Etten JL, Koonin EV, La Scola B, Raoult D: “Megavirales”, a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses. Arch Virol 2013, 158: 2517-2521.PubMedPubMedCentralCrossRef
28.
go back to reference Colson P, Pagnier I, Yoosuf N, Fournous G, La Scola B, Raoult D: “Marseilleviridae”, a new family of giant viruses infecting amoebae. Arch Virol 2013, 158: 915-920.PubMedCrossRef Colson P, Pagnier I, Yoosuf N, Fournous G, La Scola B, Raoult D: “Marseilleviridae”, a new family of giant viruses infecting amoebae. Arch Virol 2013, 158: 915-920.PubMedCrossRef
30.
go back to reference Yutin N, Koonin EV: Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity. Biol Direct 2009, 4: 51.PubMedPubMedCentralCrossRef Yutin N, Koonin EV: Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity. Biol Direct 2009, 4: 51.PubMedPubMedCentralCrossRef
31.
go back to reference La Scola B, Campocasso A, N’Dong R, Fournous G, Barrassi L, Flaudrops C, Raoult D: Tentative characterization of new environmental giant viruses by MALDI-TOF mass spectrometry. Intervirology 2010, 53: 344-353.PubMedCrossRef La Scola B, Campocasso A, N’Dong R, Fournous G, Barrassi L, Flaudrops C, Raoult D: Tentative characterization of new environmental giant viruses by MALDI-TOF mass spectrometry. Intervirology 2010, 53: 344-353.PubMedCrossRef
32.
go back to reference Yutin N, Colson P, Raoult D, Koonin EV: Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family. Virol J 2013, 10: 106.PubMedPubMedCentralCrossRef Yutin N, Colson P, Raoult D, Koonin EV: Mimiviridae: clusters of orthologous genes, reconstruction of gene repertoire evolution and proposed expansion of the giant virus family. Virol J 2013, 10: 106.PubMedPubMedCentralCrossRef
33.
go back to reference Pagnier I, Reteno DG, Saadi H, Boughalmi M, Gaia M, Slimani M, Ngounga T, Bekliz M, Colson P, Raoult D, La Scola B: A decade of improvements in Mimiviridae and Marseilleviridae isolation from amoeba. Intervirology 2013, 56: 354-363.PubMedCrossRef Pagnier I, Reteno DG, Saadi H, Boughalmi M, Gaia M, Slimani M, Ngounga T, Bekliz M, Colson P, Raoult D, La Scola B: A decade of improvements in Mimiviridae and Marseilleviridae isolation from amoeba. Intervirology 2013, 56: 354-363.PubMedCrossRef
35.
go back to reference Costa AO, Castro EA, Ferreira GA, Furst C, Crozeta MA, Thomaz-Soccol V: Characterization of acanthamoeba isolates from dust of a public hospital in Curitiba, Parana, Brazil. J Eukaryot Microbiol 2010, 57: 70-75.PubMedCrossRef Costa AO, Castro EA, Ferreira GA, Furst C, Crozeta MA, Thomaz-Soccol V: Characterization of acanthamoeba isolates from dust of a public hospital in Curitiba, Parana, Brazil. J Eukaryot Microbiol 2010, 57: 70-75.PubMedCrossRef
36.
go back to reference Rohr U, Weber S, Michel R, Selenka F, Wilhelm M: Comparison of free-living amoebae in hot water systems of hospitals with isolates from moist sanitary areas by identifying genera and determining temperature tolerance. Appl Environ Microbiol 1998, 64: 1822-1824.PubMedPubMedCentral Rohr U, Weber S, Michel R, Selenka F, Wilhelm M: Comparison of free-living amoebae in hot water systems of hospitals with isolates from moist sanitary areas by identifying genera and determining temperature tolerance. Appl Environ Microbiol 1998, 64: 1822-1824.PubMedPubMedCentral
37.
go back to reference Coulon C, Collignon A, McDonnell G, Thomas V: Resistance of Acanthamoeba cysts to disinfection treatments used in health care settings. J Clin Microbiol 2010, 48: 2689-2697.PubMedPubMedCentralCrossRef Coulon C, Collignon A, McDonnell G, Thomas V: Resistance of Acanthamoeba cysts to disinfection treatments used in health care settings. J Clin Microbiol 2010, 48: 2689-2697.PubMedPubMedCentralCrossRef
38.
39.
go back to reference Ghigo E, Kartenbeck J, Lien P, Pelkmans L, Capo C, Mege JL, Raoult D: Ameobal pathogen mimivirus infects macrophages through phagocytosis. PLoS Pathog 2008, 4: e1000087.PubMedPubMedCentralCrossRef Ghigo E, Kartenbeck J, Lien P, Pelkmans L, Capo C, Mege JL, Raoult D: Ameobal pathogen mimivirus infects macrophages through phagocytosis. PLoS Pathog 2008, 4: e1000087.PubMedPubMedCentralCrossRef
41.
go back to reference Kilvington S, Price J: Survival of Legionella pneumophila within cysts of Acanthamoeba polyphaga following chlorine exposure. J Appl Bacteriol 1990, 68: 519-525.PubMedCrossRef Kilvington S, Price J: Survival of Legionella pneumophila within cysts of Acanthamoeba polyphaga following chlorine exposure. J Appl Bacteriol 1990, 68: 519-525.PubMedCrossRef
42.
go back to reference Matsuo J, Hayashi Y, Nakamura S, Sato M, Mizutani Y, Asaka M, Yamaguchi H: Novel Parachlamydia acanthamoebae quantification method based on coculture with amoebae. Appl Environ Microbiol 2008, 74: 6397-6404.PubMedPubMedCentralCrossRef Matsuo J, Hayashi Y, Nakamura S, Sato M, Mizutani Y, Asaka M, Yamaguchi H: Novel Parachlamydia acanthamoebae quantification method based on coculture with amoebae. Appl Environ Microbiol 2008, 74: 6397-6404.PubMedPubMedCentralCrossRef
43.
go back to reference Harriff M, Bermudez LE: Environmental amoebae and mycobacterial pathogenesis. Methods Mol Biol 2009, 465: 433-442.PubMedCrossRef Harriff M, Bermudez LE: Environmental amoebae and mycobacterial pathogenesis. Methods Mol Biol 2009, 465: 433-442.PubMedCrossRef
44.
go back to reference Claverie JM, Grzela R, Lartigue A, Bernadac A, Nitsche S, Vacelet J, Ogata H, Abergel C: Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges. J Invertebr Pathol 2009, 101: 172-180.PubMedCrossRef Claverie JM, Grzela R, Lartigue A, Bernadac A, Nitsche S, Vacelet J, Ogata H, Abergel C: Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges. J Invertebr Pathol 2009, 101: 172-180.PubMedCrossRef
45.
go back to reference Khan M, La Scola B, Lepidi H, Raoult D: Pneumonia in mice inoculated experimentally with Acanthamoeba polyphaga mimivirus. Microb Pathog 2007, 42: 56-61.PubMedCrossRef Khan M, La Scola B, Lepidi H, Raoult D: Pneumonia in mice inoculated experimentally with Acanthamoeba polyphaga mimivirus. Microb Pathog 2007, 42: 56-61.PubMedCrossRef
46.
go back to reference Popgeorgiev N, Boyer M, Fancello L, Monteil S, Robert C, Rivet R, Nappez C, Azza S, Chiaroni J, Raoult D, Desnues C: Marseillevirus-like virus recovered from blood donated by asymptomatic humans. J Infect Dis 2013, 208: 1042-1050.PubMedCrossRef Popgeorgiev N, Boyer M, Fancello L, Monteil S, Robert C, Rivet R, Nappez C, Azza S, Chiaroni J, Raoult D, Desnues C: Marseillevirus-like virus recovered from blood donated by asymptomatic humans. J Infect Dis 2013, 208: 1042-1050.PubMedCrossRef
47.
go back to reference Hoffmann B, Scheuch M, Hoper D, Jungblut R, Holsteg M, Schirrmeier H, Eschbaumer M, Goller KV, Wernike K, Fischer M, Breithaupt A, Mettenleiter TC, Beer M: Novel orthobunyavirus in Cattle, Europe, 2011. Emerg Infect Dis 2012, 18: 469-472.PubMedPubMedCentralCrossRef Hoffmann B, Scheuch M, Hoper D, Jungblut R, Holsteg M, Schirrmeier H, Eschbaumer M, Goller KV, Wernike K, Fischer M, Breithaupt A, Mettenleiter TC, Beer M: Novel orthobunyavirus in Cattle, Europe, 2011. Emerg Infect Dis 2012, 18: 469-472.PubMedPubMedCentralCrossRef
48.
go back to reference Dornas FP, Rodrigues FP, Boratto PV, Silva LC, Ferreira PC, Bonjardim CA, Trindade GS, Kroon EG, La Scola B, Abrahao JS: Mimivirus Circulation among Wild and Domestic Mammals, Amazon Region, Brazil. Emerg Infect Dis 2014, 20: 469-472.PubMedPubMedCentralCrossRef Dornas FP, Rodrigues FP, Boratto PV, Silva LC, Ferreira PC, Bonjardim CA, Trindade GS, Kroon EG, La Scola B, Abrahao JS: Mimivirus Circulation among Wild and Domestic Mammals, Amazon Region, Brazil. Emerg Infect Dis 2014, 20: 469-472.PubMedPubMedCentralCrossRef
49.
go back to reference Silva LC, Almeida GM, Oliveira DB, Dornas FP, Campos RK, La Scola B, Ferreira PC, Kroon EG, Abrahao JS: A resourceful giant: APMV is able to interfere with the human type I interferon system. Microbes Infect 2013, 16: 187-195.PubMedCrossRef Silva LC, Almeida GM, Oliveira DB, Dornas FP, Campos RK, La Scola B, Ferreira PC, Kroon EG, Abrahao JS: A resourceful giant: APMV is able to interfere with the human type I interferon system. Microbes Infect 2013, 16: 187-195.PubMedCrossRef
50.
go back to reference Saadi H, Reteno DG, Colson P, Aherfi S, Minodier P, Pagnier I, Raoult D, La Scola B: Shan virus: a new mimivirus isolated from the stool of a Tunisian patient with pneumonia. Intervirology 2013, 56: 424-429.PubMedCrossRef Saadi H, Reteno DG, Colson P, Aherfi S, Minodier P, Pagnier I, Raoult D, La Scola B: Shan virus: a new mimivirus isolated from the stool of a Tunisian patient with pneumonia. Intervirology 2013, 56: 424-429.PubMedCrossRef
51.
go back to reference Colson P, La Scola B, Raoult D: Giant viruses of amoebae as potential human pathogens. Intervirology 2013, 56: 376-385.PubMedCrossRef Colson P, La Scola B, Raoult D: Giant viruses of amoebae as potential human pathogens. Intervirology 2013, 56: 376-385.PubMedCrossRef
52.
go back to reference Saadi H, Pagnier I, Colson P, Cherif JK, Beji M, Boughalmi M, Azza S, Armstrong N, Robert C, Fournous G, La Scola B, Raoult D: First isolation of Mimivirus in a patient with pneumonia. Clin Infect Dis 2013, 57: e127-e134.PubMedCrossRef Saadi H, Pagnier I, Colson P, Cherif JK, Beji M, Boughalmi M, Azza S, Armstrong N, Robert C, Fournous G, La Scola B, Raoult D: First isolation of Mimivirus in a patient with pneumonia. Clin Infect Dis 2013, 57: e127-e134.PubMedCrossRef
53.
go back to reference Colson P, Fancello L, Gimenez G, Armougom F, Desnues C, Fournous G, Yoosuf N, Million M, La Scola B, Raoult D: Evidence of the megavirome in humans. J Clin Virol 2013, 57: 191-200.PubMedCrossRef Colson P, Fancello L, Gimenez G, Armougom F, Desnues C, Fournous G, Yoosuf N, Million M, La Scola B, Raoult D: Evidence of the megavirome in humans. J Clin Virol 2013, 57: 191-200.PubMedCrossRef
54.
go back to reference Bousbia S, Papazian L, Saux P, Forel JM, Auffray JP, Martin C, Raoult D, La Scola B: Serologic prevalence of amoeba-associated microorganisms in intensive care unit pneumonia patients. PLoS One 2013, 8: e58111.PubMedPubMedCentralCrossRef Bousbia S, Papazian L, Saux P, Forel JM, Auffray JP, Martin C, Raoult D, La Scola B: Serologic prevalence of amoeba-associated microorganisms in intensive care unit pneumonia patients. PLoS One 2013, 8: e58111.PubMedPubMedCentralCrossRef
55.
go back to reference Vincent A, La Scola B, Forel JM, Pauly V, Raoult D, Papazian L: Clinical significance of a positive serology for mimivirus in patients presenting a suspicion of ventilator-associated pneumonia. Crit Care Med 2009, 37: 111-118.PubMedCrossRef Vincent A, La Scola B, Forel JM, Pauly V, Raoult D, Papazian L: Clinical significance of a positive serology for mimivirus in patients presenting a suspicion of ventilator-associated pneumonia. Crit Care Med 2009, 37: 111-118.PubMedCrossRef
56.
go back to reference Raoult D, Renesto P, Brouqui P: Laboratory infection of a technician by mimivirus. Ann Intern Med 2006, 144: 702-703.PubMedCrossRef Raoult D, Renesto P, Brouqui P: Laboratory infection of a technician by mimivirus. Ann Intern Med 2006, 144: 702-703.PubMedCrossRef
58.
go back to reference Azza S, Cambillau C, Raoult D, Suzan-Monti M: Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain. BMC Mol Biol 2009, 10: 39.PubMedPubMedCentralCrossRef Azza S, Cambillau C, Raoult D, Suzan-Monti M: Revised Mimivirus major capsid protein sequence reveals intron-containing gene structure and extra domain. BMC Mol Biol 2009, 10: 39.PubMedPubMedCentralCrossRef
59.
go back to reference McPherson A, Kuznetsov YG: Atomic force microscopy investigation of viruses. Methods Mol Biol 2011, 736: 171-195.PubMedCrossRef McPherson A, Kuznetsov YG: Atomic force microscopy investigation of viruses. Methods Mol Biol 2011, 736: 171-195.PubMedCrossRef
60.
62.
63.
go back to reference Xiao C, Kuznetsov YG, Sun S, Hafenstein SL, Kostyuchenko VA, Chipman PR, Suzan-Monti M, Raoult D, McPherson A, Rossmann MG: Structural studies of the giant mimivirus. PLoS Biol 2009, 7: e92.PubMedCrossRef Xiao C, Kuznetsov YG, Sun S, Hafenstein SL, Kostyuchenko VA, Chipman PR, Suzan-Monti M, Raoult D, McPherson A, Rossmann MG: Structural studies of the giant mimivirus. PLoS Biol 2009, 7: e92.PubMedCrossRef
64.
go back to reference Zauberman N, Mutsafi Y, Halevy DB, Shimoni E, Klein E, Xiao C, Sun S, Minsky A: Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus. PLoS Biol 2008, 6: e114.PubMedPubMedCentralCrossRef Zauberman N, Mutsafi Y, Halevy DB, Shimoni E, Klein E, Xiao C, Sun S, Minsky A: Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus. PLoS Biol 2008, 6: e114.PubMedPubMedCentralCrossRef
65.
go back to reference Dornas FP, Silva LC, de Almeida GM, Campos RK, Boratto PV, Franco-Luiz AP, La Scola B, Ferreira PC, Kroon EG, Abrahao JS: Acanthamoeba polyphaga mimivirus stability in environmental and clinical substrates: implications for virus detection and isolation. PLoS One 2014, 9: e87811.PubMedPubMedCentralCrossRef Dornas FP, Silva LC, de Almeida GM, Campos RK, Boratto PV, Franco-Luiz AP, La Scola B, Ferreira PC, Kroon EG, Abrahao JS: Acanthamoeba polyphaga mimivirus stability in environmental and clinical substrates: implications for virus detection and isolation. PLoS One 2014, 9: e87811.PubMedPubMedCentralCrossRef
66.
go back to reference Campos RK, Andrade KR, Ferreira PC, Bonjardim CA, La Scola B, Kroon EG, Abrahao JS: Virucidal activity of chemical biocides against mimivirus, a putative pneumonia agent. J Clin Virol 2012, 55: 323-328.PubMedCrossRef Campos RK, Andrade KR, Ferreira PC, Bonjardim CA, La Scola B, Kroon EG, Abrahao JS: Virucidal activity of chemical biocides against mimivirus, a putative pneumonia agent. J Clin Virol 2012, 55: 323-328.PubMedCrossRef
67.
go back to reference Slimani M, Pagnier I, Boughalmi M, Raoult D, La Scola B: Alcohol disinfection procedure for isolating giant viruses from contaminated samples. Intervirology 2013, 56: 434-440.PubMedCrossRef Slimani M, Pagnier I, Boughalmi M, Raoult D, La Scola B: Alcohol disinfection procedure for isolating giant viruses from contaminated samples. Intervirology 2013, 56: 434-440.PubMedCrossRef
68.
go back to reference Legendre M, Santini S, Rico A, Abergel C, Claverie JM: Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Virol J 2011, 8: 99.PubMedPubMedCentralCrossRef Legendre M, Santini S, Rico A, Abergel C, Claverie JM: Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing. Virol J 2011, 8: 99.PubMedPubMedCentralCrossRef
69.
go back to reference Colson P, Raoult D: Gene repertoire of amoeba-associated giant viruses. Intervirology 2010, 53: 330-343.PubMedCrossRef Colson P, Raoult D: Gene repertoire of amoeba-associated giant viruses. Intervirology 2010, 53: 330-343.PubMedCrossRef
70.
go back to reference Renesto P, Abergel C, Decloquement P, Moinier D, Azza S, Ogata H, Fourquet P, Gorvel JP, Claverie JM: Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J Virol 2006, 80: 11678-11685.PubMedPubMedCentralCrossRef Renesto P, Abergel C, Decloquement P, Moinier D, Azza S, Ogata H, Fourquet P, Gorvel JP, Claverie JM: Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J Virol 2006, 80: 11678-11685.PubMedPubMedCentralCrossRef
72.
go back to reference Hakim M, Ezerina D, Alon A, Vonshak O, Fass D: Exploring ORFan domains in giant viruses: structure of mimivirus sulfhydryl oxidase R596. PLoS One 2012, 7: e50649.PubMedPubMedCentralCrossRef Hakim M, Ezerina D, Alon A, Vonshak O, Fass D: Exploring ORFan domains in giant viruses: structure of mimivirus sulfhydryl oxidase R596. PLoS One 2012, 7: e50649.PubMedPubMedCentralCrossRef
73.
go back to reference Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM: The 1.2-megabase genome sequence of Mimivirus. Science 2004, 306: 1344-1350.PubMedCrossRef Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM: The 1.2-megabase genome sequence of Mimivirus. Science 2004, 306: 1344-1350.PubMedCrossRef
74.
go back to reference Abergel C, Rudinger-Thirion J, Giege R, Claverie JM: Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS. J Virol 2007, 81: 12406-12417.PubMedPubMedCentralCrossRef Abergel C, Rudinger-Thirion J, Giege R, Claverie JM: Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS. J Virol 2007, 81: 12406-12417.PubMedPubMedCentralCrossRef
75.
go back to reference Colson P, Fournous G, Diene SM, Raoult D: Codon usage, amino acid usage, transfer RNA and amino-acyl-tRNA synthetases in Mimiviruses. Intervirology 2013, 56: 364-375.PubMedCrossRef Colson P, Fournous G, Diene SM, Raoult D: Codon usage, amino acid usage, transfer RNA and amino-acyl-tRNA synthetases in Mimiviruses. Intervirology 2013, 56: 364-375.PubMedCrossRef
76.
go back to reference Boyer M, Azza S, Barrassi L, Klose T, Campocasso A, Pagnier I, Fournous G, Borg A, Robert C, Zhang X, Desnues C, Henrissat B, Rossmann MG, La Scola B, Raoult D: Mimivirus shows dramatic genome reduction after intraamoebal culture. Proc Natl Acad Sci U S A 2011, 108: 10296-10301.PubMedPubMedCentralCrossRef Boyer M, Azza S, Barrassi L, Klose T, Campocasso A, Pagnier I, Fournous G, Borg A, Robert C, Zhang X, Desnues C, Henrissat B, Rossmann MG, La Scola B, Raoult D: Mimivirus shows dramatic genome reduction after intraamoebal culture. Proc Natl Acad Sci U S A 2011, 108: 10296-10301.PubMedPubMedCentralCrossRef
77.
go back to reference Colson P, Raoult D: Lamarckian evolution of the giant Mimivirus in allopatric laboratory culture on amoebae. Front Cell Infect Microbiol 2012, 2: 91.PubMedPubMedCentral Colson P, Raoult D: Lamarckian evolution of the giant Mimivirus in allopatric laboratory culture on amoebae. Front Cell Infect Microbiol 2012, 2: 91.PubMedPubMedCentral
78.
go back to reference Mutsafi Y, Zauberman N, Sabanay I, Minsky A: Vaccinia-like cytoplasmic replication of the giant Mimivirus. Proc Natl Acad Sci U S A 2010, 107: 5978-5982.PubMedPubMedCentralCrossRef Mutsafi Y, Zauberman N, Sabanay I, Minsky A: Vaccinia-like cytoplasmic replication of the giant Mimivirus. Proc Natl Acad Sci U S A 2010, 107: 5978-5982.PubMedPubMedCentralCrossRef
79.
go back to reference Kuznetsov YG, Klose T, Rossmann M, McPherson A: Morphogenesis of mimivirus and its viral factories: an atomic force microscopy study of infected cells. J Virol 2013, 87: 11200-11213.PubMedPubMedCentralCrossRef Kuznetsov YG, Klose T, Rossmann M, McPherson A: Morphogenesis of mimivirus and its viral factories: an atomic force microscopy study of infected cells. J Virol 2013, 87: 11200-11213.PubMedPubMedCentralCrossRef
80.
go back to reference Suhre K, Audic S, Claverie JM: Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc Natl Acad Sci U S A 2005, 102: 14689-14693.PubMedPubMedCentralCrossRef Suhre K, Audic S, Claverie JM: Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes. Proc Natl Acad Sci U S A 2005, 102: 14689-14693.PubMedPubMedCentralCrossRef
81.
go back to reference Campos RK, Boratto PV, Assis FL, Aguiar ERGR, Silva LCF, Albarnaz JD, Dornas FP, Trindade GS, Ferreira PCP, Marques JT, Roberts C, Raoult D, Kroon EG, La Scola B, Abrahao JS: Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon. Virol J 2014, 11: 95.PubMedPubMedCentralCrossRef Campos RK, Boratto PV, Assis FL, Aguiar ERGR, Silva LCF, Albarnaz JD, Dornas FP, Trindade GS, Ferreira PCP, Marques JT, Roberts C, Raoult D, Kroon EG, La Scola B, Abrahao JS: Samba virus: a novel mimivirus from a giant rain forest, the Brazilian Amazon. Virol J 2014, 11: 95.PubMedPubMedCentralCrossRef
82.
go back to reference Dai W, Fu C, Raytcheva D, Flanagan J, Khant HA, Liu X, Rochat RH, Haase-Pettingell C, Piret J, Ludtke SJ, Nagayama K, Schmid MF, King JA, Chiu W: Visualizing virus assembly intermediates inside marine cyanobacteria. Nature 2013, 502: 707-710.PubMedPubMedCentralCrossRef Dai W, Fu C, Raytcheva D, Flanagan J, Khant HA, Liu X, Rochat RH, Haase-Pettingell C, Piret J, Ludtke SJ, Nagayama K, Schmid MF, King JA, Chiu W: Visualizing virus assembly intermediates inside marine cyanobacteria. Nature 2013, 502: 707-710.PubMedPubMedCentralCrossRef
83.
go back to reference Sheik AR, Brussaard CP, Lavik G, Lam P, Musat N, Krupke A, Littmann S, Strous M, Kuypers MM: Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa. ISME J 2014, 8: 212-225.PubMedPubMedCentralCrossRef Sheik AR, Brussaard CP, Lavik G, Lam P, Musat N, Krupke A, Littmann S, Strous M, Kuypers MM: Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa. ISME J 2014, 8: 212-225.PubMedPubMedCentralCrossRef
84.
go back to reference Fischer MG, Allen MJ, Wilson WH, Suttle CA: Giant virus with a remarkable complement of genes infects marine zooplankton. Proc Natl Acad Sci U S A 2010, 107: 19508-19513.PubMedPubMedCentralCrossRef Fischer MG, Allen MJ, Wilson WH, Suttle CA: Giant virus with a remarkable complement of genes infects marine zooplankton. Proc Natl Acad Sci U S A 2010, 107: 19508-19513.PubMedPubMedCentralCrossRef
85.
88.
go back to reference Williams TA, Embley TM, Heinz E: Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses. PLoS One 2011, 6: e21080.PubMedPubMedCentralCrossRef Williams TA, Embley TM, Heinz E: Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses. PLoS One 2011, 6: e21080.PubMedPubMedCentralCrossRef
89.
go back to reference Piacente F, Marin M, Molinaro A, De Castro C, Seltzer V, Salis A, Damonte G, Bernardi C, Claverie JM, Abergel C, Tonetti M: Giant DNA virus mimivirus encodes pathway for biosynthesis of unusual sugar 4-amino-4,6-dideoxy-D-glucose (Viosamine). J Biol Chem 2012, 287: 3009-3018.PubMedPubMedCentralCrossRef Piacente F, Marin M, Molinaro A, De Castro C, Seltzer V, Salis A, Damonte G, Bernardi C, Claverie JM, Abergel C, Tonetti M: Giant DNA virus mimivirus encodes pathway for biosynthesis of unusual sugar 4-amino-4,6-dideoxy-D-glucose (Viosamine). J Biol Chem 2012, 287: 3009-3018.PubMedPubMedCentralCrossRef
90.
go back to reference Luther KB, Hulsmeier AJ, Schegg B, Deuber SA, Raoult D, Hennet T: Mimivirus collagen is modified by bifunctional lysyl hydroxylase and glycosyltransferase enzyme. J Biol Chem 2011, 286: 43701-43709.PubMedPubMedCentralCrossRef Luther KB, Hulsmeier AJ, Schegg B, Deuber SA, Raoult D, Hennet T: Mimivirus collagen is modified by bifunctional lysyl hydroxylase and glycosyltransferase enzyme. J Biol Chem 2011, 286: 43701-43709.PubMedPubMedCentralCrossRef
91.
go back to reference Fischer MG, Suttle CA: A virophage at the origin of large DNA transposons. Science 2011, 332: 231-234.PubMedCrossRef Fischer MG, Suttle CA: A virophage at the origin of large DNA transposons. Science 2011, 332: 231-234.PubMedCrossRef
92.
go back to reference Yutin N, Raoult D, Koonin EV: Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies. Virol J 2013, 10: 158.PubMedPubMedCentralCrossRef Yutin N, Raoult D, Koonin EV: Virophages, polintons, and transpovirons: a complex evolutionary network of diverse selfish genetic elements with different reproduction strategies. Virol J 2013, 10: 158.PubMedPubMedCentralCrossRef
93.
go back to reference Turner P, Turner C, Watthanaworawit W, Carrara V, Cicelia N, Deglise C, Phares C, Ortega L, Nosten F: Respiratory virus surveillance in hospitalised pneumonia patients on the Thailand-Myanmar border. BMC Infect Dis 2013, 13: 434.PubMedPubMedCentralCrossRef Turner P, Turner C, Watthanaworawit W, Carrara V, Cicelia N, Deglise C, Phares C, Ortega L, Nosten F: Respiratory virus surveillance in hospitalised pneumonia patients on the Thailand-Myanmar border. BMC Infect Dis 2013, 13: 434.PubMedPubMedCentralCrossRef
94.
go back to reference Marrie TJ, Costain N, La Scola B, Patrick W, Forgie S, Xu Z, McNeil SA: The role of atypical pathogens in community-acquired pneumonia. Semin Respir Crit Care Med 2012, 33: 244-256.PubMedCrossRef Marrie TJ, Costain N, La Scola B, Patrick W, Forgie S, Xu Z, McNeil SA: The role of atypical pathogens in community-acquired pneumonia. Semin Respir Crit Care Med 2012, 33: 244-256.PubMedCrossRef
95.
go back to reference Vanspauwen MJ, Schnabel RM, Bruggeman CA, Drent M, van Mook WN, Bergmans DC, Linssen CF: Mimivirus is not a frequent cause of ventilator-associated pneumonia in critically ill patients. J Med Virol 2013, 85: 1836-1841.PubMedCrossRef Vanspauwen MJ, Schnabel RM, Bruggeman CA, Drent M, van Mook WN, Bergmans DC, Linssen CF: Mimivirus is not a frequent cause of ventilator-associated pneumonia in critically ill patients. J Med Virol 2013, 85: 1836-1841.PubMedCrossRef
97.
go back to reference Costa C, Bergallo M, Astegiano S, Terlizzi ME, Sidoti F, Solidoro P, Cavallo R: Detection of Mimivirus in bronchoalveolar lavage of ventilated and nonventilated patients. Intervirology 2012, 55: 303-305.PubMedCrossRef Costa C, Bergallo M, Astegiano S, Terlizzi ME, Sidoti F, Solidoro P, Cavallo R: Detection of Mimivirus in bronchoalveolar lavage of ventilated and nonventilated patients. Intervirology 2012, 55: 303-305.PubMedCrossRef
98.
go back to reference Vanspauwen MJ, Franssen FM, Raoult D, Wouters EF, Bruggeman CA, Linssen CF: Infections with mimivirus in patients with chronic obstructive pulmonary disease. Respir Med 2012, 106: 1690-1694.PubMedCrossRef Vanspauwen MJ, Franssen FM, Raoult D, Wouters EF, Bruggeman CA, Linssen CF: Infections with mimivirus in patients with chronic obstructive pulmonary disease. Respir Med 2012, 106: 1690-1694.PubMedCrossRef
99.
100.
go back to reference Boratto PV, Dornas FP, Andrade KR, Rodrigues R, Peixoto F, Silva LC, La Scola B, Costa AO, de Almeida GM, Kroon EG, Abrahao JS: Amoebas as mimivirus bunkers: increased resistance to UV light, heat and chemical biocides when viruses are carried by amoeba hosts. Arch Virol 2013, 159: 1039-1043.PubMed Boratto PV, Dornas FP, Andrade KR, Rodrigues R, Peixoto F, Silva LC, La Scola B, Costa AO, de Almeida GM, Kroon EG, Abrahao JS: Amoebas as mimivirus bunkers: increased resistance to UV light, heat and chemical biocides when viruses are carried by amoeba hosts. Arch Virol 2013, 159: 1039-1043.PubMed
Metadata
Title
Acanthamoeba polyphaga mimivirus and other giant viruses: an open field to outstanding discoveries
Authors
Jônatas S Abrahão
Fábio P Dornas
Lorena CF Silva
Gabriel M Almeida
Paulo VM Boratto
Phillipe Colson
Bernard La Scola
Erna G Kroon
Publication date
01-12-2014
Publisher
BioMed Central
Published in
Virology Journal / Issue 1/2014
Electronic ISSN: 1743-422X
DOI
https://doi.org/10.1186/1743-422X-11-120

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