Skip to main content
Top
Published in: BMC Cancer 1/2014

Open Access 01-12-2014 | Research article

Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver

Authors: Alexandra Naba, Karl R Clauser, Charles A Whittaker, Steven A Carr, Kenneth K Tanabe, Richard O Hynes

Published in: BMC Cancer | Issue 1/2014

Login to get access

Abstract

Background

Colorectal cancer is the third most frequently diagnosed cancer and the third cause of cancer deaths in the United States. Despite the fact that tumor cell-intrinsic mechanisms controlling colorectal carcinogenesis have been identified, novel prognostic and diagnostic tools as well as novel therapeutic strategies are still needed to monitor and target colon cancer progression. We and others have previously shown, using mouse models, that the extracellular matrix (ECM), a major component of the tumor microenvironment, is an important contributor to tumor progression. In order to identify candidate biomarkers, we sought to define ECM signatures of metastatic colorectal cancers and their metastases to the liver.

Methods

We have used enrichment of extracellular matrix (ECM) from human patient samples and proteomics to define the ECM composition of primary colon carcinomas and their metastases to liver in comparison with normal colon and liver samples.

Results

We show that robust signatures of ECM proteins characteristic of each tissue, normal and malignant, can be defined using relatively small samples from small numbers of patients. Comparisons with gene expression data from larger cohorts of patients confirm the association of subsets of the proteins identified by proteomic analysis with tumor progression and metastasis.

Conclusions

The ECM protein signatures of metastatic primary colon carcinomas and metastases to liver defined in this study, offer promise for development of diagnostic and prognostic signatures of metastatic potential of colon tumors. The ECM proteins defined here represent candidate serological or tissue biomarkers and potential targets for imaging of occult metastases and residual or recurrent tumors and conceivably for therapies. Furthermore, the methods described here can be applied to other tumor types and can be used to investigate other questions such as the role of ECM in resistance to therapy.
Appendix
Available only for authorised users
Literature
2.
go back to reference Network CGA: Comprehensive molecular characterization of human colon and rectal cancer. Nature. 2012, 487: 330-337.CrossRef Network CGA: Comprehensive molecular characterization of human colon and rectal cancer. Nature. 2012, 487: 330-337.CrossRef
3.
go back to reference Hanash S, Taguchi A: The grand challenge to decipher the cancer proteome. Nat Rev Cancer. 2010, 10: 652-660.CrossRefPubMed Hanash S, Taguchi A: The grand challenge to decipher the cancer proteome. Nat Rev Cancer. 2010, 10: 652-660.CrossRefPubMed
4.
go back to reference De Wit M, Fijneman RJA, Verheul HMW, Meijer GA, Jimenez CR: Proteomics in colorectal cancer translational research: biomarker discovery for clinical applications. Clin Biochem. 2013, 46: 466-479.CrossRefPubMed De Wit M, Fijneman RJA, Verheul HMW, Meijer GA, Jimenez CR: Proteomics in colorectal cancer translational research: biomarker discovery for clinical applications. Clin Biochem. 2013, 46: 466-479.CrossRefPubMed
5.
go back to reference Luo Y, Wang L, Wang J: Developing proteomics-based biomarkers for colorectal neoplasms for clinical practice: opportunities and challenges. Proteomics Clin Appl. 2013, 7: 30-41.CrossRefPubMed Luo Y, Wang L, Wang J: Developing proteomics-based biomarkers for colorectal neoplasms for clinical practice: opportunities and challenges. Proteomics Clin Appl. 2013, 7: 30-41.CrossRefPubMed
7.
go back to reference Hynes RO, Naba A: Overview of the matrisome–an inventory of extracellular matrix constituents and functions. Cold Spring Harb Perspect Biol. 2012, 4: a004903-CrossRefPubMedPubMedCentral Hynes RO, Naba A: Overview of the matrisome–an inventory of extracellular matrix constituents and functions. Cold Spring Harb Perspect Biol. 2012, 4: a004903-CrossRefPubMedPubMedCentral
8.
go back to reference Cretu A, Brooks PC: Impact of the non-cellular tumor microenvironment on metastasis: potential therapeutic and imaging opportunities. J Cell Physiol. 2007, 213: 391-402.CrossRefPubMed Cretu A, Brooks PC: Impact of the non-cellular tumor microenvironment on metastasis: potential therapeutic and imaging opportunities. J Cell Physiol. 2007, 213: 391-402.CrossRefPubMed
11.
go back to reference Jacobetz MA, Chan DS, Neesse A, Bapiro TE, Cook N, Frese KK, Feig C, Nakagawa T, Caldwell ME, Zecchini HI, Lolkema MP, Jiang P, Kultti A, Thompson CB, Maneval DC, Jodrell DI, Frost GI, Shepard HM, Skepper JN, Tuveson DA: Hyaluronan impairs vascular function and drug delivery in a mouse model of pancreatic cancer. Gut. 2013, 62: 112-120.CrossRefPubMed Jacobetz MA, Chan DS, Neesse A, Bapiro TE, Cook N, Frese KK, Feig C, Nakagawa T, Caldwell ME, Zecchini HI, Lolkema MP, Jiang P, Kultti A, Thompson CB, Maneval DC, Jodrell DI, Frost GI, Shepard HM, Skepper JN, Tuveson DA: Hyaluronan impairs vascular function and drug delivery in a mouse model of pancreatic cancer. Gut. 2013, 62: 112-120.CrossRefPubMed
12.
go back to reference Chauhan VP, Stylianopoulos T, Boucher Y, Jain RK: Delivery of molecular and nanoscale medicine to tumors: transport barriers and strategies. Annu Rev Chem Biomol Eng. 2011, 2: 281-298.CrossRefPubMed Chauhan VP, Stylianopoulos T, Boucher Y, Jain RK: Delivery of molecular and nanoscale medicine to tumors: transport barriers and strategies. Annu Rev Chem Biomol Eng. 2011, 2: 281-298.CrossRefPubMed
13.
go back to reference Naba A, Clauser KR, Hoersch S, Liu H, Carr SA, Hynes RO: The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices. Mol Cell Proteomics. 2012, 11: M111.014647-CrossRefPubMed Naba A, Clauser KR, Hoersch S, Liu H, Carr SA, Hynes RO: The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices. Mol Cell Proteomics. 2012, 11: M111.014647-CrossRefPubMed
14.
go back to reference Naba A, Clauser KR, Lamar JM, Carr SA, Hynes RO: Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters. eLife. 2014, 3: e01308-CrossRefPubMedPubMedCentral Naba A, Clauser KR, Lamar JM, Carr SA, Hynes RO: Extracellular matrix signatures of human mammary carcinoma identify novel metastasis promoters. eLife. 2014, 3: e01308-CrossRefPubMedPubMedCentral
16.
go back to reference Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005, 102: 15545-15550.CrossRefPubMedPubMedCentral Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, Gillette MA, Paulovich A, Pomeroy SL, Golub TR, Lander ES, Mesirov JP: Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005, 102: 15545-15550.CrossRefPubMedPubMedCentral
17.
go back to reference Del Rio M, Mollevi C, Vezzio-Vie N, Bibeau F, Ychou M, Martineau P: Specific extracellular matrix remodeling signature of colon hepatic metastases. PLoS One. 2013, 8: e74599-CrossRefPubMedPubMedCentral Del Rio M, Mollevi C, Vezzio-Vie N, Bibeau F, Ychou M, Martineau P: Specific extracellular matrix remodeling signature of colon hepatic metastases. PLoS One. 2013, 8: e74599-CrossRefPubMedPubMedCentral
18.
go back to reference Ki DH, Jeung H-C, Park CH, Kang SH, Lee GY, Lee WS, Kim NK, Chung HC, Rha SY: Whole genome analysis for liver metastasis gene signatures in colorectal cancer. Int J Cancer J Int Cancer. 2007, 121: 2005-2012.CrossRef Ki DH, Jeung H-C, Park CH, Kang SH, Lee GY, Lee WS, Kim NK, Chung HC, Rha SY: Whole genome analysis for liver metastasis gene signatures in colorectal cancer. Int J Cancer J Int Cancer. 2007, 121: 2005-2012.CrossRef
19.
go back to reference Tsuji S, Midorikawa Y, Takahashi T, Yagi K, Takayama T, Yoshida K, Sugiyama Y, Aburatani H: Potential responders to FOLFOX therapy for colorectal cancer by random forests analysis. Br J Cancer. 2012, 106: 126-132.CrossRefPubMed Tsuji S, Midorikawa Y, Takahashi T, Yagi K, Takayama T, Yoshida K, Sugiyama Y, Aburatani H: Potential responders to FOLFOX therapy for colorectal cancer by random forests analysis. Br J Cancer. 2012, 106: 126-132.CrossRefPubMed
20.
go back to reference Sheffer M, Bacolod MD, Zuk O, Giardina SF, Pincas H, Barany F, Paty PB, Gerald WL, Notterman DA, Domany E: Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer. Proc Natl Acad Sci U S A. 2009, 106: 7131-7136.CrossRefPubMedPubMedCentral Sheffer M, Bacolod MD, Zuk O, Giardina SF, Pincas H, Barany F, Paty PB, Gerald WL, Notterman DA, Domany E: Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer. Proc Natl Acad Sci U S A. 2009, 106: 7131-7136.CrossRefPubMedPubMedCentral
21.
go back to reference Lin AY, Chua M-S, Choi Y-L, Yeh W, Kim YH, Azzi R, Adams GA, Sainani K, van de Rijn M, So SK, Pollack JR: Comparative profiling of primary colorectal carcinomas and liver metastases identifies LEF1 as a prognostic biomarker. PLoS One. 2011, 6: e16636-CrossRefPubMedPubMedCentral Lin AY, Chua M-S, Choi Y-L, Yeh W, Kim YH, Azzi R, Adams GA, Sainani K, van de Rijn M, So SK, Pollack JR: Comparative profiling of primary colorectal carcinomas and liver metastases identifies LEF1 as a prognostic biomarker. PLoS One. 2011, 6: e16636-CrossRefPubMedPubMedCentral
22.
go back to reference Ben Q-W, Zhao Z, Ge S-F, Zhou J, Yuan F, Yuan Y-Z: Circulating levels of periostin may help identify patients with more aggressive colorectal cancer. Int J Oncol. 2009, 34: 821-828.PubMed Ben Q-W, Zhao Z, Ge S-F, Zhou J, Yuan F, Yuan Y-Z: Circulating levels of periostin may help identify patients with more aggressive colorectal cancer. Int J Oncol. 2009, 34: 821-828.PubMed
23.
go back to reference Bao S, Ouyang G, Bai X, Huang Z, Ma C, Liu M, Shao R, Anderson RM, Rich JN, Wang X-F: Periostin potently promotes metastatic growth of colon cancer by augmenting cell survival via the Akt/PKB pathway. Cancer Cell. 2004, 5: 329-339.CrossRefPubMed Bao S, Ouyang G, Bai X, Huang Z, Ma C, Liu M, Shao R, Anderson RM, Rich JN, Wang X-F: Periostin potently promotes metastatic growth of colon cancer by augmenting cell survival via the Akt/PKB pathway. Cancer Cell. 2004, 5: 329-339.CrossRefPubMed
24.
go back to reference Chlenski A, Cohn SL: Modulation of matrix remodeling by SPARC in neoplastic progression. Semin Cell Dev Biol. 2010, 21: 55-65.CrossRefPubMed Chlenski A, Cohn SL: Modulation of matrix remodeling by SPARC in neoplastic progression. Semin Cell Dev Biol. 2010, 21: 55-65.CrossRefPubMed
25.
go back to reference Ahmed M, Behera R, Chakraborty G, Jain S, Kumar V, Sharma P, Bulbule A, Kale S, Kumar S, Mishra R, Raja R, Saraswati S, Kaur R, Soundararajan G, Kumar D, Thorat D, Sanyal M, Ramdasi A, Ghosh P, Kundu GC: Osteopontin: a potentially important therapeutic target in cancer. Expert Opin Ther Targets. 2011, 15: 1113-1126.CrossRefPubMed Ahmed M, Behera R, Chakraborty G, Jain S, Kumar V, Sharma P, Bulbule A, Kale S, Kumar S, Mishra R, Raja R, Saraswati S, Kaur R, Soundararajan G, Kumar D, Thorat D, Sanyal M, Ramdasi A, Ghosh P, Kundu GC: Osteopontin: a potentially important therapeutic target in cancer. Expert Opin Ther Targets. 2011, 15: 1113-1126.CrossRefPubMed
26.
go back to reference Rangaswami H, Bulbule A, Kundu GC: Osteopontin: role in cell signaling and cancer progression. Trends Cell Biol. 2006, 16: 79-87.CrossRefPubMed Rangaswami H, Bulbule A, Kundu GC: Osteopontin: role in cell signaling and cancer progression. Trends Cell Biol. 2006, 16: 79-87.CrossRefPubMed
27.
go back to reference Liu AY, Zheng H, Ouyang G: Periostin, a multifunctional matricellular protein in inflammatory and tumor microenvironments. Matrix Biol J Int Soc Matrix Biol. 2014 Liu AY, Zheng H, Ouyang G: Periostin, a multifunctional matricellular protein in inflammatory and tumor microenvironments. Matrix Biol J Int Soc Matrix Biol. 2014
28.
go back to reference Yao L, Lao W, Zhang Y, Tang X, Hu X, He C, Hu X, Xu LX: Identification of EFEMP2 as a serum biomarker for the early detection of colorectal cancer with lectin affinity capture assisted secretome analysis of cultured fresh tissues. J Proteome Res. 2012, 11: 3281-3294.CrossRefPubMed Yao L, Lao W, Zhang Y, Tang X, Hu X, He C, Hu X, Xu LX: Identification of EFEMP2 as a serum biomarker for the early detection of colorectal cancer with lectin affinity capture assisted secretome analysis of cultured fresh tissues. J Proteome Res. 2012, 11: 3281-3294.CrossRefPubMed
29.
go back to reference Holten-Andersen MN, Christensen IJ, Nielsen HJ, Stephens RW, Jensen V, Nielsen OH, Sørensen S, Overgaard J, Lilja H, Harris A, Murphy G, Brünner N: Total levels of tissue inhibitor of metalloproteinases 1 in plasma yield high diagnostic sensitivity and specificity in patients with colon cancer. Clin Cancer Res. 2002, 8: 156-164.PubMed Holten-Andersen MN, Christensen IJ, Nielsen HJ, Stephens RW, Jensen V, Nielsen OH, Sørensen S, Overgaard J, Lilja H, Harris A, Murphy G, Brünner N: Total levels of tissue inhibitor of metalloproteinases 1 in plasma yield high diagnostic sensitivity and specificity in patients with colon cancer. Clin Cancer Res. 2002, 8: 156-164.PubMed
30.
go back to reference Sørensen NM, Byström P, Christensen IJ, Berglund A, Nielsen HJ, Brünner N, Glimelius B: TIMP-1 is significantly associated with objective response and survival in metastatic colorectal cancer patients receiving combination of irinotecan, 5-fluorouracil, and folinic acid. Clin Cancer Res. 2007, 13: 4117-4122.CrossRefPubMed Sørensen NM, Byström P, Christensen IJ, Berglund A, Nielsen HJ, Brünner N, Glimelius B: TIMP-1 is significantly associated with objective response and survival in metastatic colorectal cancer patients receiving combination of irinotecan, 5-fluorouracil, and folinic acid. Clin Cancer Res. 2007, 13: 4117-4122.CrossRefPubMed
31.
go back to reference McPherson RA, Pincus MR: Henry’s Clinical Diagnosis and Management by Laboratory Methods. 2011, Philadelphia, PA, U.S.A: Elsevier Health Sciences, 22 McPherson RA, Pincus MR: Henry’s Clinical Diagnosis and Management by Laboratory Methods. 2011, Philadelphia, PA, U.S.A: Elsevier Health Sciences, 22
32.
go back to reference Pasche N, Neri D: Immunocytokines: a novel class of potent armed antibodies. Drug Discov Today. 2012, 17: 583-590.CrossRefPubMed Pasche N, Neri D: Immunocytokines: a novel class of potent armed antibodies. Drug Discov Today. 2012, 17: 583-590.CrossRefPubMed
33.
go back to reference Pasche N, Wulhfard S, Pretto F, Carugati E, Neri D: The antibody-based delivery of interleukin-12 to the tumor neovasculature eradicates murine models of cancer in combination with paclitaxel. Clin Cancer Res. 2012, 18: 4092-4103.CrossRefPubMed Pasche N, Wulhfard S, Pretto F, Carugati E, Neri D: The antibody-based delivery of interleukin-12 to the tumor neovasculature eradicates murine models of cancer in combination with paclitaxel. Clin Cancer Res. 2012, 18: 4092-4103.CrossRefPubMed
Metadata
Title
Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver
Authors
Alexandra Naba
Karl R Clauser
Charles A Whittaker
Steven A Carr
Kenneth K Tanabe
Richard O Hynes
Publication date
01-12-2014
Publisher
BioMed Central
Published in
BMC Cancer / Issue 1/2014
Electronic ISSN: 1471-2407
DOI
https://doi.org/10.1186/1471-2407-14-518

Other articles of this Issue 1/2014

BMC Cancer 1/2014 Go to the issue
Webinar | 19-02-2024 | 17:30 (CET)

Keynote webinar | Spotlight on antibody–drug conjugates in cancer

Antibody–drug conjugates (ADCs) are novel agents that have shown promise across multiple tumor types. Explore the current landscape of ADCs in breast and lung cancer with our experts, and gain insights into the mechanism of action, key clinical trials data, existing challenges, and future directions.

Dr. Véronique Diéras
Prof. Fabrice Barlesi
Developed by: Springer Medicine