Skip to main content
Top
Published in: BMC Cancer 1/2010

Open Access 01-12-2010 | Research article

Novel genetic variants in miR-191 gene and familial ovarian cancer

Authors: Jie Shen, Richard DiCioccio, Kunle Odunsi, Shashikant B Lele, Hua Zhao

Published in: BMC Cancer | Issue 1/2010

Login to get access

Abstract

Background

Half of the familial aggregation of ovarian cancer can't be explained by any known risk genes, suggesting the existence of other genetic risk factors. Some of these unknown factors may not be traditional protein encoding genes. MicroRNA (miRNA) plays a critical role in tumorigenesis, but it is still unknown if variants in miRNA genes lead to predisposition to cancer. Considering the fact that miRNA regulates a number of tumor suppressor genes (TSGs) and oncogenes, genetic variations in miRNA genes could affect the levels of expression of TSGs or oncogenes and, thereby, cancer risk.

Methods and Results

To test this hypothesis in familial ovarian cancer, we screened for genetic variants in thirty selected miRNA genes, which are predicted to regulate key ovarian cancer genes and are reported to be misexpressed in ovarian tumor tissues, in eighty-three patients with familial ovarian cancer. All of the patients are non-carriers of any known BRCA1/2 or mismatch repair (MMR) gene mutations. Seven novel genetic variants were observed in four primary or precursor miRNA genes. Among them, three rare variants were found in the precursor or primary precursor of the miR-191 gene. In functional assays, the one variant located in the precursor of miR-191 resulted in conformational changes in the predicted secondary structures, and consequently altered the expression of mature miR-191. In further analysis, we found that this particular variant exists in five family members who had ovarian cancer.

Conclusions

Our findings suggest that there are novel genetic variants in miRNA genes, and those certain genetic variants in miRNA genes can affect the expression of mature miRNAs and, consequently, might alter the regulation of TSGs or oncogenes. Additionally, the variant might be potentially associated with the development of familial ovarian cancer.
Appendix
Available only for authorised users
Literature
1.
go back to reference Yancik R: Ovarian cancer. Age contrasts in incidence, histology, disease stage at diagnosis, and mortality. Cancer. 1993, 71 (2 Suppl): 517-23.PubMed Yancik R: Ovarian cancer. Age contrasts in incidence, histology, disease stage at diagnosis, and mortality. Cancer. 1993, 71 (2 Suppl): 517-23.PubMed
2.
go back to reference Narod SA, Ford D, Devilee P, Barkardottir RB, Lynch HT, Smith SA, Ponder BAJ, Weber BL, Garber JE, Birch JM, Cornelis RS, Kelsell DP, Spurr NK, Smyth E, Haites N, Sobol H, Bignon Y-J, Chang-Claude J, Hamann U, Lindblom A, Borg A, Piver MS, Gallion HH, Struewing JP, Whittemore A, Tonin P, Goldgar DE, Easton DF: An evaluation of genetic heterogeneity in 145 breast-ovarian cancer families. Am J Hum Genet. 1995, 56: 254-264.PubMedPubMedCentral Narod SA, Ford D, Devilee P, Barkardottir RB, Lynch HT, Smith SA, Ponder BAJ, Weber BL, Garber JE, Birch JM, Cornelis RS, Kelsell DP, Spurr NK, Smyth E, Haites N, Sobol H, Bignon Y-J, Chang-Claude J, Hamann U, Lindblom A, Borg A, Piver MS, Gallion HH, Struewing JP, Whittemore A, Tonin P, Goldgar DE, Easton DF: An evaluation of genetic heterogeneity in 145 breast-ovarian cancer families. Am J Hum Genet. 1995, 56: 254-264.PubMedPubMedCentral
3.
go back to reference Ford D, Easton DF, Stratton M, Narod S, Goldgar D, Devilee P, Bishop DT, Weber B, Lenoir G, Chang-Claude J, Sobol H, Teare MD, Struewing J, Arason A, Scherneck S, Peto J, Rebbeck TR, Tonin P, Neuhausen S, Barkardottir R, Eyfjord J, Lynch H, Ponder BA, Gayther SA, Zelada-Hedman M: Genetic heterogeneity and penetrance analysis of the BRCA1 and BRCA2 genes in breast cancer families. Am J Hum Genet. 1998, 62: 676-689. 10.1086/301749.CrossRefPubMedPubMedCentral Ford D, Easton DF, Stratton M, Narod S, Goldgar D, Devilee P, Bishop DT, Weber B, Lenoir G, Chang-Claude J, Sobol H, Teare MD, Struewing J, Arason A, Scherneck S, Peto J, Rebbeck TR, Tonin P, Neuhausen S, Barkardottir R, Eyfjord J, Lynch H, Ponder BA, Gayther SA, Zelada-Hedman M: Genetic heterogeneity and penetrance analysis of the BRCA1 and BRCA2 genes in breast cancer families. Am J Hum Genet. 1998, 62: 676-689. 10.1086/301749.CrossRefPubMedPubMedCentral
4.
go back to reference Easton DF, Bishop DT, Ford D, Crockfor GF: Genetic linkage analysis in familial breast and ovarian cancer: results from 214 families. Am J Hum Genet. 1993, 52: 678-701.PubMedPubMedCentral Easton DF, Bishop DT, Ford D, Crockfor GF: Genetic linkage analysis in familial breast and ovarian cancer: results from 214 families. Am J Hum Genet. 1993, 52: 678-701.PubMedPubMedCentral
5.
go back to reference Lynch HT, Albano WA, Lynch JF, Lynch PM, Campbell A: Surveillance and management of patients at high genetic risk for ovarian carcinoma. Obstet Gynecol. 1982, 59: 589-596.PubMed Lynch HT, Albano WA, Lynch JF, Lynch PM, Campbell A: Surveillance and management of patients at high genetic risk for ovarian carcinoma. Obstet Gynecol. 1982, 59: 589-596.PubMed
6.
go back to reference Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, Petrocca F, Visone R, Iorio M, Roldo C, Ferracin M, Prueitt RL, Yanaihara N, Lanza G, Scarpa A, Vecchione A, Negrini M, Harris CC, Croce CM: A microRNA expression signature of human solid tumors define cancer gene targets. Proc Natl Acad Sci USA. 2006, 103: 2257-61. 10.1073/pnas.0510565103.CrossRefPubMedPubMedCentral Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, Petrocca F, Visone R, Iorio M, Roldo C, Ferracin M, Prueitt RL, Yanaihara N, Lanza G, Scarpa A, Vecchione A, Negrini M, Harris CC, Croce CM: A microRNA expression signature of human solid tumors define cancer gene targets. Proc Natl Acad Sci USA. 2006, 103: 2257-61. 10.1073/pnas.0510565103.CrossRefPubMedPubMedCentral
7.
go back to reference Zhang L, Volinia S, Bonome T, Calin GA, Greshock J, Yang N, Liu CG, Giannakakis A, Alexiou P, Hasegawa K, Johnstone CN, Megraw MS, Adams S, Lassus H, Huang J, Kaur S, Liang S, Sethupathy P, Leminen A, Simossis VA, Sandaltzopoulos R, Naomoto Y, Katsaros D, Gimotty PA, DeMichele A, Huang Q, Bützow R, Rustgi AK, Weber BL, Birrer MJ, Hatzigeorgiou AG, Croce CM, Coukos G: Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer. Proc Natl Acad Sci USA. 2008, 105: 7004-9. 10.1073/pnas.0801615105.CrossRefPubMedPubMedCentral Zhang L, Volinia S, Bonome T, Calin GA, Greshock J, Yang N, Liu CG, Giannakakis A, Alexiou P, Hasegawa K, Johnstone CN, Megraw MS, Adams S, Lassus H, Huang J, Kaur S, Liang S, Sethupathy P, Leminen A, Simossis VA, Sandaltzopoulos R, Naomoto Y, Katsaros D, Gimotty PA, DeMichele A, Huang Q, Bützow R, Rustgi AK, Weber BL, Birrer MJ, Hatzigeorgiou AG, Croce CM, Coukos G: Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer. Proc Natl Acad Sci USA. 2008, 105: 7004-9. 10.1073/pnas.0801615105.CrossRefPubMedPubMedCentral
8.
go back to reference Shen J, Ambrosone CB, Zhao H: Novel genetic variants in microRNA genes and familial breast cancer. Int J Cancer. 2009, 124: 1178-82. 10.1002/ijc.24008.CrossRefPubMed Shen J, Ambrosone CB, Zhao H: Novel genetic variants in microRNA genes and familial breast cancer. Int J Cancer. 2009, 124: 1178-82. 10.1002/ijc.24008.CrossRefPubMed
9.
go back to reference Shen J, Ambrosone CB, DiCioccio RA, Odunsi K, Lele SB, Zhao H: A functional polymorphism in the miR-146a gene and age of familial breast/ovarian cancer diagnosis. Carcinogenesis. 2008, 29: 1963-6. 10.1093/carcin/bgn172.CrossRefPubMed Shen J, Ambrosone CB, DiCioccio RA, Odunsi K, Lele SB, Zhao H: A functional polymorphism in the miR-146a gene and age of familial breast/ovarian cancer diagnosis. Carcinogenesis. 2008, 29: 1963-6. 10.1093/carcin/bgn172.CrossRefPubMed
10.
go back to reference Xu T, Zhu Y, Wei QK, Yuan Y, Zhou F, Ge YY, Yang JR, Su H, Zhuang SM: A functional polymorphism in the miR-146a gene is associated with the risk for hepatocellular carcinoma. Carcinogenesis. 2008, 29: 2126-31. 10.1093/carcin/bgn195.CrossRefPubMed Xu T, Zhu Y, Wei QK, Yuan Y, Zhou F, Ge YY, Yang JR, Su H, Zhuang SM: A functional polymorphism in the miR-146a gene is associated with the risk for hepatocellular carcinoma. Carcinogenesis. 2008, 29: 2126-31. 10.1093/carcin/bgn195.CrossRefPubMed
11.
go back to reference Jazdzewski K, Murray EL, Franssila K, Jarzab B, Schoenberg DR, de la Chapelle A: Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma. Proc Natl Acad Sci USA. 2008, 105: 7269-74. 10.1073/pnas.0802682105.CrossRefPubMedPubMedCentral Jazdzewski K, Murray EL, Franssila K, Jarzab B, Schoenberg DR, de la Chapelle A: Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma. Proc Natl Acad Sci USA. 2008, 105: 7269-74. 10.1073/pnas.0802682105.CrossRefPubMedPubMedCentral
12.
go back to reference Iovino N, Unnerstall U, Gaul U, Segal E: The role of site accessibility in microRNA target recognition. Nat Genet. 2007, 39: 1278-84. 10.1038/ng2135.CrossRefPubMed Iovino N, Unnerstall U, Gaul U, Segal E: The role of site accessibility in microRNA target recognition. Nat Genet. 2007, 39: 1278-84. 10.1038/ng2135.CrossRefPubMed
13.
go back to reference Calin GA, Croce CM: MIcroRNA signatures in human cancers. Nat Rev Cancer. 2006, 6: 857-866. 10.1038/nrc1997.CrossRefPubMed Calin GA, Croce CM: MIcroRNA signatures in human cancers. Nat Rev Cancer. 2006, 6: 857-866. 10.1038/nrc1997.CrossRefPubMed
14.
go back to reference Gorlov IP, Gorlova OY, Sunyaev SR, Spitz MR, Amos CI: Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms. Am J Hum Genet. 2008, 82: 100-12. 10.1016/j.ajhg.2007.09.006.CrossRefPubMedPubMedCentral Gorlov IP, Gorlova OY, Sunyaev SR, Spitz MR, Amos CI: Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms. Am J Hum Genet. 2008, 82: 100-12. 10.1016/j.ajhg.2007.09.006.CrossRefPubMedPubMedCentral
15.
go back to reference Duan R, Pak C, Jin P: Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Hum Mol Genet. 2007, 16: 1124-1131. 10.1093/hmg/ddm062.CrossRefPubMed Duan R, Pak C, Jin P: Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA. Hum Mol Genet. 2007, 16: 1124-1131. 10.1093/hmg/ddm062.CrossRefPubMed
16.
go back to reference Zheng Y, Cullen BR: Sequence requirements for microRNA processing and function in human cells. RNA. 2003, 9: 112-123. 10.1261/rna.2780503.CrossRef Zheng Y, Cullen BR: Sequence requirements for microRNA processing and function in human cells. RNA. 2003, 9: 112-123. 10.1261/rna.2780503.CrossRef
17.
go back to reference Lynch HT, Casey MJ, Lynch J, White TE, Godwin AK: Genetics and ovarian carcinoma. Semin Oncol. 1998, 25: 265-80.PubMed Lynch HT, Casey MJ, Lynch J, White TE, Godwin AK: Genetics and ovarian carcinoma. Semin Oncol. 1998, 25: 265-80.PubMed
18.
go back to reference Pejovic T, Yates JE, Liu HY, Hays LE, Akkari Y, Torimaru Y, Keeble W, Rathbun RK, Rodgers WH, Bale AE, Ameziane N, Zwaan CM, Errami A, Thuillier P, Cappuccini F, Olson SB, Cain JM, Bagby GC: Cytogenetic instability in ovarian epithelial cells from women at risk of ovarian cancer. Cancer Res. 2006, 66: 9017-25. 10.1158/0008-5472.CAN-06-0222.CrossRefPubMed Pejovic T, Yates JE, Liu HY, Hays LE, Akkari Y, Torimaru Y, Keeble W, Rathbun RK, Rodgers WH, Bale AE, Ameziane N, Zwaan CM, Errami A, Thuillier P, Cappuccini F, Olson SB, Cain JM, Bagby GC: Cytogenetic instability in ovarian epithelial cells from women at risk of ovarian cancer. Cancer Res. 2006, 66: 9017-25. 10.1158/0008-5472.CAN-06-0222.CrossRefPubMed
Metadata
Title
Novel genetic variants in miR-191 gene and familial ovarian cancer
Authors
Jie Shen
Richard DiCioccio
Kunle Odunsi
Shashikant B Lele
Hua Zhao
Publication date
01-12-2010
Publisher
BioMed Central
Published in
BMC Cancer / Issue 1/2010
Electronic ISSN: 1471-2407
DOI
https://doi.org/10.1186/1471-2407-10-47

Other articles of this Issue 1/2010

BMC Cancer 1/2010 Go to the issue
Webinar | 19-02-2024 | 17:30 (CET)

Keynote webinar | Spotlight on antibody–drug conjugates in cancer

Antibody–drug conjugates (ADCs) are novel agents that have shown promise across multiple tumor types. Explore the current landscape of ADCs in breast and lung cancer with our experts, and gain insights into the mechanism of action, key clinical trials data, existing challenges, and future directions.

Dr. Véronique Diéras
Prof. Fabrice Barlesi
Developed by: Springer Medicine