Skip to main content
Top
Published in: Journal of Natural Medicines 3/2016

01-07-2016 | Original Paper

Anti-dormant mycobacterial activity and target molecule of melophlins, tetramic acid derivatives isolated from a marine sponge of Melophlus sp.

Authors: Masayoshi Arai, Yoshi Yamano, Kentaro Kamiya, Andi Setiawan, Motomasa Kobayashi

Published in: Journal of Natural Medicines | Issue 3/2016

Login to get access

Abstract

Tuberculosis (TB), caused by Mycobacterium tuberculosis infection, is a major world health problem that is responsible for the deaths of 1.5 million people each year. In addition, the requirement for long-term therapy to cure TB complicates treatment of the disease. One of the major reasons for the extended chemotherapeutic regimens and wide epidemicity of TB is that M. tuberculosis has the ability to persist in a dormant state. We therefore established a new screening system to search for substances with activity against dormant mycobacteria using M. smegmatis and M. bovis BCG cultivated in medium containing propionate as sole carbon source to induce dormancy. Subsequently, melophlins A (1), G (2), H (3), and I (4), tetramic acid derivatives, were re-discovered from the Indonesian marine sponge of Melophlus sp. as anti-dormant mycobacterial substances. Moreover, target analysis of melophlin A indicated that it targeted the BCG1083 protein of putative exopolyphosphatase and the BCG1321c protein of diadenosine 5′,5‴-P1,P4-tetraphosphate phosphorylase.
Literature
1.
3.
go back to reference Arai M, Sobou M, Vilcheze C, Baughn A, Hashizume H, Pruksakorn P, Ishida S, Matsumoto M, Jacobs WR Jr, Kobayashi M (2008) Halicyclamine A, a marine spongean alkaloid as a lead for anti-tuberculosis agent. Bioorg Med Chem 16:6732–6736CrossRefPubMed Arai M, Sobou M, Vilcheze C, Baughn A, Hashizume H, Pruksakorn P, Ishida S, Matsumoto M, Jacobs WR Jr, Kobayashi M (2008) Halicyclamine A, a marine spongean alkaloid as a lead for anti-tuberculosis agent. Bioorg Med Chem 16:6732–6736CrossRefPubMed
4.
go back to reference Arai M, Ishida S, Setiawan A, Kobayashi M (2009) Haliclonacyclamines, tetracyclic alkylpiperidine alkaloids, as anti-dormant mycobacterial substances from a marine sponge of Haliclona sp. Chem Pharm Bull 57:1136–1138CrossRefPubMed Arai M, Ishida S, Setiawan A, Kobayashi M (2009) Haliclonacyclamines, tetracyclic alkylpiperidine alkaloids, as anti-dormant mycobacterial substances from a marine sponge of Haliclona sp. Chem Pharm Bull 57:1136–1138CrossRefPubMed
5.
go back to reference Pruksakorn P, Arai M, Kotoku N, Vilcheze C, Baughn AD, Moodley P, Jacobs WR Jr, Kobayashi M (2010) Trichoderins, novel aminolipopeptides from a marine sponge-derived Trichoderma sp., are active against dormant mycobacteria. Bioorg Med Chem Lett 20:3658–3663CrossRefPubMed Pruksakorn P, Arai M, Kotoku N, Vilcheze C, Baughn AD, Moodley P, Jacobs WR Jr, Kobayashi M (2010) Trichoderins, novel aminolipopeptides from a marine sponge-derived Trichoderma sp., are active against dormant mycobacteria. Bioorg Med Chem Lett 20:3658–3663CrossRefPubMed
6.
go back to reference Yamano Y, Arai M, Kobayashi M (2012) Neamphamide B, new cyclic depsipeptide, as an anti-dormant mycobacterial substance from a Japanese marine sponge of Neamphius sp. Bioorg Med Chem Lett 22:4877–4881CrossRefPubMed Yamano Y, Arai M, Kobayashi M (2012) Neamphamide B, new cyclic depsipeptide, as an anti-dormant mycobacterial substance from a Japanese marine sponge of Neamphius sp. Bioorg Med Chem Lett 22:4877–4881CrossRefPubMed
7.
go back to reference Arai M, Han C, Yamano Y, Setiawan A, Kobayashi M (2014) Aaptamines, marine spongean alkaloids, as anti-dormant mycobacterial substances. J Nat Med 68:372–376CrossRefPubMed Arai M, Han C, Yamano Y, Setiawan A, Kobayashi M (2014) Aaptamines, marine spongean alkaloids, as anti-dormant mycobacterial substances. J Nat Med 68:372–376CrossRefPubMed
8.
go back to reference Arai M, Yamano Y, Setiawan A, Kobayashi M (2014) Identification of the target protein of agelasine D, a marine sponge diterpene alkaloid, as an anti-dormant mycobacterial substance. ChemBioChem 15:117–123CrossRefPubMed Arai M, Yamano Y, Setiawan A, Kobayashi M (2014) Identification of the target protein of agelasine D, a marine sponge diterpene alkaloid, as an anti-dormant mycobacterial substance. ChemBioChem 15:117–123CrossRefPubMed
10.
go back to reference McKinney JD, Bentrup KH, Muñoz-Elías EJ, Miczak A, Chen B, Chan WT, Swenson D, Sacchettini JC, Jacobs WR Jr, Russell DG (2000) Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase. Nature 406:735–738CrossRefPubMed McKinney JD, Bentrup KH, Muñoz-Elías EJ, Miczak A, Chen B, Chan WT, Swenson D, Sacchettini JC, Jacobs WR Jr, Russell DG (2000) Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase. Nature 406:735–738CrossRefPubMed
11.
go back to reference Muñoz-Elías EJ, Upton AM, Cherian J, McKinney JD (2006) Role of the methylcitrate cycle in Mycobacterium tuberculosis metabolism, intracellular growth, and virulence. Mol Microbiol 60:1109–1122CrossRefPubMed Muñoz-Elías EJ, Upton AM, Cherian J, McKinney JD (2006) Role of the methylcitrate cycle in Mycobacterium tuberculosis metabolism, intracellular growth, and virulence. Mol Microbiol 60:1109–1122CrossRefPubMed
12.
go back to reference Aoki S, Higuchi K, Ye Y, Satari R, Kobayashi M (2000) Melophlins A and B, novel tetramic acids reversing the phenotype of ras-transformed cells, from the marine sponge Melophlus sarassinorum. Tetrahedron 56:1833–1836CrossRef Aoki S, Higuchi K, Ye Y, Satari R, Kobayashi M (2000) Melophlins A and B, novel tetramic acids reversing the phenotype of ras-transformed cells, from the marine sponge Melophlus sarassinorum. Tetrahedron 56:1833–1836CrossRef
13.
go back to reference Wang CY, Wang BG, Wiryowidagdo S, Wray V, Soest RV, Steube KG, Guan HS, Proksch P, Ebel R (2003) Melophlins C-O, thirteen novel tetramic acids from the marine sponge Melophlus sarassinorum. J Nat Prod 66:51–56CrossRefPubMed Wang CY, Wang BG, Wiryowidagdo S, Wray V, Soest RV, Steube KG, Guan HS, Proksch P, Ebel R (2003) Melophlins C-O, thirteen novel tetramic acids from the marine sponge Melophlus sarassinorum. J Nat Prod 66:51–56CrossRefPubMed
14.
go back to reference Xu J, Hasegawa M, Harada K, Kobayashi H, Nagai H, Namikoshi M (2006) Melophlins P, Q, R, and S: four new tetramic acid derivatives, from two Palauan marine sponges of the genus Melophlus. Chem Pharm Bull 54:852–854CrossRefPubMed Xu J, Hasegawa M, Harada K, Kobayashi H, Nagai H, Namikoshi M (2006) Melophlins P, Q, R, and S: four new tetramic acid derivatives, from two Palauan marine sponges of the genus Melophlus. Chem Pharm Bull 54:852–854CrossRefPubMed
15.
go back to reference Knoth T, Warburg K, Katzka C, Rai A, Wolf A, Brockmeyer A, Janning P, Ruebold TF, Eschenburg S, Manstein DJ, Hübel K, Kaiser M, Waldmann H (2009) The ras pathway modulator melophlin A targets dynamins. Angew Chem Int Ed 48:7240–7245CrossRef Knoth T, Warburg K, Katzka C, Rai A, Wolf A, Brockmeyer A, Janning P, Ruebold TF, Eschenburg S, Manstein DJ, Hübel K, Kaiser M, Waldmann H (2009) The ras pathway modulator melophlin A targets dynamins. Angew Chem Int Ed 48:7240–7245CrossRef
16.
go back to reference Arai M, Liu L, Fujimoto T, Setiawan A, Kobayashi M (2011) DedA protein relates to action-mechanism of halicyclamine A, a marine spongean macrocyclic alkaloid, as an anti-dormant mycobacterial substance. Mar Drugs 9:984–993CrossRefPubMedPubMedCentral Arai M, Liu L, Fujimoto T, Setiawan A, Kobayashi M (2011) DedA protein relates to action-mechanism of halicyclamine A, a marine spongean macrocyclic alkaloid, as an anti-dormant mycobacterial substance. Mar Drugs 9:984–993CrossRefPubMedPubMedCentral
17.
go back to reference Pruksakorn P, Arai M, Liu L, Moodley P, Jacobs WR Jr, Kobayashi M (2011) Action-mechanism of trichoderin A, an anti-dormant mycobacterial aminolipopeptide from marine sponge-derived Trichoderma sp. Biol Pharm Bull 34:1287–1290CrossRefPubMed Pruksakorn P, Arai M, Liu L, Moodley P, Jacobs WR Jr, Kobayashi M (2011) Action-mechanism of trichoderin A, an anti-dormant mycobacterial aminolipopeptide from marine sponge-derived Trichoderma sp. Biol Pharm Bull 34:1287–1290CrossRefPubMed
18.
go back to reference Balasubramanian V, Pavelka MS Jr, Bardarov SS, Martin J, Weisbrod TR, McAdam RA, Bloom BR, Jacobs WR Jr (1996) Allelic exchange in Mycobacterium tuberculosis with long linear recombination substrates. J Bacteriol 178:273–279PubMedPubMedCentral Balasubramanian V, Pavelka MS Jr, Bardarov SS, Martin J, Weisbrod TR, McAdam RA, Bloom BR, Jacobs WR Jr (1996) Allelic exchange in Mycobacterium tuberculosis with long linear recombination substrates. J Bacteriol 178:273–279PubMedPubMedCentral
19.
go back to reference Wayne LG, Sohaskey CD (2001) Nonreplicating persistence of Mycobacterium tuberculosis. Annu Rev Microbiol 55:139–163CrossRefPubMed Wayne LG, Sohaskey CD (2001) Nonreplicating persistence of Mycobacterium tuberculosis. Annu Rev Microbiol 55:139–163CrossRefPubMed
20.
go back to reference Lim A, Eleuterio M, Hutter B, Murugasu-Oei B, Dick T (1999) Oxygen depletion-induced dormancy in Mycobacterium bovis BCG. J Bacteriol 181:2252–2256PubMedPubMedCentral Lim A, Eleuterio M, Hutter B, Murugasu-Oei B, Dick T (1999) Oxygen depletion-induced dormancy in Mycobacterium bovis BCG. J Bacteriol 181:2252–2256PubMedPubMedCentral
21.
go back to reference Dick T, Lee BH, Murugasu-Oei B (1998) Oxygen depletion induced dormancy in Mycobacterium smegmatis. FEMS Microbiol Lett 163:159–164CrossRefPubMed Dick T, Lee BH, Murugasu-Oei B (1998) Oxygen depletion induced dormancy in Mycobacterium smegmatis. FEMS Microbiol Lett 163:159–164CrossRefPubMed
22.
go back to reference Wayne LG, Hayes LG (1996) An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of nonreplicating persistence. Infect Immun 64:2062–2069PubMedPubMedCentral Wayne LG, Hayes LG (1996) An in vitro model for sequential study of shiftdown of Mycobacterium tuberculosis through two stages of nonreplicating persistence. Infect Immun 64:2062–2069PubMedPubMedCentral
23.
go back to reference Sassetti CM, Boyd DH, Rubin EJ (2003) Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48:77–84CrossRefPubMed Sassetti CM, Boyd DH, Rubin EJ (2003) Genes required for mycobacterial growth defined by high density mutagenesis. Mol Microbiol 48:77–84CrossRefPubMed
24.
go back to reference Chuang YM, Bandyopadhyay N, Rifat D, Rubin H, Bader JS, Karakousis PC (2015) Deficiency of the novel exopolyphosphatase Rv1026/PPX2 leads to metabolic downshift and altered cell wall permeability in Mycobacterium tuberculosis. mBio 6:e02428CrossRefPubMedPubMedCentral Chuang YM, Bandyopadhyay N, Rifat D, Rubin H, Bader JS, Karakousis PC (2015) Deficiency of the novel exopolyphosphatase Rv1026/PPX2 leads to metabolic downshift and altered cell wall permeability in Mycobacterium tuberculosis. mBio 6:e02428CrossRefPubMedPubMedCentral
25.
go back to reference Brenner C (2002) Hint, Fhit, and GalT: function, structure, evolution, and mechanism of three branches of the histidine triad superfamily of nucleotide hydrolases and transferases. Biochemistry 41:9003–9014CrossRefPubMedPubMedCentral Brenner C (2002) Hint, Fhit, and GalT: function, structure, evolution, and mechanism of three branches of the histidine triad superfamily of nucleotide hydrolases and transferases. Biochemistry 41:9003–9014CrossRefPubMedPubMedCentral
26.
go back to reference Mori S, Shibayama K, Wachino J, Arakawa Y (2010) Purification and molecular characterization of a novel diadenosine 5′,5‴-P1,P4-tetraphosphate phosphorylase from Mycobacterium tuberculosis H37Rv. Protein Expr Purif 69:99–105CrossRefPubMed Mori S, Shibayama K, Wachino J, Arakawa Y (2010) Purification and molecular characterization of a novel diadenosine 5′,5‴-P1,P4-tetraphosphate phosphorylase from Mycobacterium tuberculosis H37Rv. Protein Expr Purif 69:99–105CrossRefPubMed
27.
go back to reference Farr SB, Arnosti DN, Chamberlin MJ, Ames BN (1989) An apaH mutation causes AppppA to accumulate and affects motility and catabolite repression in Escherichia coli. Proc Natl Acad Sci USA 86:5010–5014CrossRefPubMedPubMedCentral Farr SB, Arnosti DN, Chamberlin MJ, Ames BN (1989) An apaH mutation causes AppppA to accumulate and affects motility and catabolite repression in Escherichia coli. Proc Natl Acad Sci USA 86:5010–5014CrossRefPubMedPubMedCentral
28.
go back to reference Ismail TM, Hart CA, McLennan AG (2003) Regulation of dinucleoside polyphosphate pools by the YgdP and ApaH hydrolases is essential for the ability of Salmonella enterica serovar Typhimurium to invade cultured mammalian cells. J Biol Chem 278:32602–32607CrossRefPubMed Ismail TM, Hart CA, McLennan AG (2003) Regulation of dinucleoside polyphosphate pools by the YgdP and ApaH hydrolases is essential for the ability of Salmonella enterica serovar Typhimurium to invade cultured mammalian cells. J Biol Chem 278:32602–32607CrossRefPubMed
Metadata
Title
Anti-dormant mycobacterial activity and target molecule of melophlins, tetramic acid derivatives isolated from a marine sponge of Melophlus sp.
Authors
Masayoshi Arai
Yoshi Yamano
Kentaro Kamiya
Andi Setiawan
Motomasa Kobayashi
Publication date
01-07-2016
Publisher
Springer Japan
Published in
Journal of Natural Medicines / Issue 3/2016
Print ISSN: 1340-3443
Electronic ISSN: 1861-0293
DOI
https://doi.org/10.1007/s11418-016-1005-1

Other articles of this Issue 3/2016

Journal of Natural Medicines 3/2016 Go to the issue