Skip to main content
Top
Published in: Molecular Imaging and Biology 1/2019

01-02-2019 | Brief Article

Computed Tomography-Based Biomarker for Longitudinal Assessment of Disease Burden in Pulmonary Tuberculosis

Authors: P. M. Gordaliza, A. Muñoz-Barrutia, L. E. Via, S. Sharpe, M. Desco, J. J. Vaquero

Published in: Molecular Imaging and Biology | Issue 1/2019

Login to get access

Abstract

Purpose

Computed tomography (CT) images enable capturing specific manifestations of tuberculosis (TB) that are undetectable using common diagnostic tests, which suffer from limited specificity. In this study, we aimed to automatically quantify the burden of Mycobacterium tuberculosis (Mtb) using biomarkers extracted from x-ray CT images.

Procedures

Nine macaques were aerosol-infected with Mtb and treated with various antibiotic cocktails. Chest CT scans were acquired in all animals at specific times independently of disease progression. First, a fully automatic segmentation of the healthy lungs from the acquired chest CT volumes was performed and air-like structures were extracted. Next, unsegmented pulmonary regions corresponding to damaged parenchymal tissue and TB lesions were included. CT biomarkers were extracted by classification of the probability distribution of the intensity of the segmented images into three tissue types: (1) Healthy tissue, parenchyma free from infection; (2) soft diseased tissue, and (3) hard diseased tissue. The probability distribution of tissue intensities was assumed to follow a Gaussian mixture model. The thresholds identifying each region were automatically computed using an expectation-maximization algorithm.

Results

The estimated longitudinal course of TB infection shows that subjects that have followed the same antibiotic treatment present a similar response (relative change in the diseased volume) with respect to baseline. More interestingly, the correlation between the diseased volume (soft tissue + hard tissue), which was manually delineated by an expert, and the automatically extracted volume with the proposed method was very strong (R2  0.8).

Conclusions

We present a methodology that is suitable for automatic extraction of a radiological biomarker from CT images for TB disease burden. The method could be used to describe the longitudinal evolution of Mtb infection in a clinical trial devoted to the design of new drugs.
Literature
1.
go back to reference World Health Organization (2017) Global tuberculosis report [Technical Report] World Health Organization (2017) Global tuberculosis report [Technical Report]
2.
go back to reference Pai M, Behr MA, Dowdy D, Dheda K, Divangahi M, Boehme CC, Ginsberg A, Swaminathan S, Spigelman M, Getahun H, Menzies D, Raviglione M (2016) Tuberculosis. Nat Rev Dis Primers 2:16076CrossRefPubMed Pai M, Behr MA, Dowdy D, Dheda K, Divangahi M, Boehme CC, Ginsberg A, Swaminathan S, Spigelman M, Getahun H, Menzies D, Raviglione M (2016) Tuberculosis. Nat Rev Dis Primers 2:16076CrossRefPubMed
3.
go back to reference Nachiappan AC, Rahbar K, Shi X, Guy ES, Mortani Barbosa EJ Jr, Shroff GS, Ocazionez D, Schlesinger AE, Katz SI, Hammer MM (2017) Pulmonary tuberculosis: role of radiology in diagnosis and management. Radiographics 37:52–72CrossRefPubMed Nachiappan AC, Rahbar K, Shi X, Guy ES, Mortani Barbosa EJ Jr, Shroff GS, Ocazionez D, Schlesinger AE, Katz SI, Hammer MM (2017) Pulmonary tuberculosis: role of radiology in diagnosis and management. Radiographics 37:52–72CrossRefPubMed
4.
go back to reference Galbán CJ, Han MK, Boes JL, Chughtai KA, Meyer CR, Johnson TD, Galbán S, Rehemtulla A, Kazerooni EA, Martinez FJ, Ross BD (2012) Computed tomography-based biomarker provides unique signature for diagnosis of COPD phenotypes and disease progression. Nat Med 18:1711–1715CrossRefPubMedPubMedCentral Galbán CJ, Han MK, Boes JL, Chughtai KA, Meyer CR, Johnson TD, Galbán S, Rehemtulla A, Kazerooni EA, Martinez FJ, Ross BD (2012) Computed tomography-based biomarker provides unique signature for diagnosis of COPD phenotypes and disease progression. Nat Med 18:1711–1715CrossRefPubMedPubMedCentral
5.
go back to reference Chen RY, Dodd LE, Lee ME et al (2014) PET/CT imaging correlates with treatment outcome in patients with multidrug-resistant tuberculosis. Sci Transl Med 6:166–265CrossRef Chen RY, Dodd LE, Lee ME et al (2014) PET/CT imaging correlates with treatment outcome in patients with multidrug-resistant tuberculosis. Sci Transl Med 6:166–265CrossRef
6.
go back to reference Via LE, Schimel D, Weiner DM, Dartois V, Dayao E, Cai Y, Yoon YS, Dreher MR, Kastenmayer RJ, Laymon CM, Carny JE, Flynn JAL, Herscovitch P, Barry CE III (2012) Infection dynamics and response to chemotherapy in a rabbit model of tuberculosis using [18F] 2-fluoro-deoxy-D-glucose positron emission tomography and computed tomography. Antimicrob Agents Chemother 56:4391–4402CrossRefPubMedPubMedCentral Via LE, Schimel D, Weiner DM, Dartois V, Dayao E, Cai Y, Yoon YS, Dreher MR, Kastenmayer RJ, Laymon CM, Carny JE, Flynn JAL, Herscovitch P, Barry CE III (2012) Infection dynamics and response to chemotherapy in a rabbit model of tuberculosis using [18F] 2-fluoro-deoxy-D-glucose positron emission tomography and computed tomography. Antimicrob Agents Chemother 56:4391–4402CrossRefPubMedPubMedCentral
7.
go back to reference Via LE, Weiner DM, Schimel D, Lin PL, Dayao E, Tankersley SL, Cai Y, Coleman MT, Tomko J, Paripati P, Orandle M, Kastenmayer RJ, Tartakovsky M, Rosenthal A, Portevin D, Eum SY, Lahouar S, Gagneux S, Young DB, Flynn JAL, Barry CE III (2013) Differential virulence and disease progression following mycobacterium tuberculosis complex infection of the common marmoset (callithrix jacchus). Infect Immun 81:2909–2919CrossRefPubMedPubMedCentral Via LE, Weiner DM, Schimel D, Lin PL, Dayao E, Tankersley SL, Cai Y, Coleman MT, Tomko J, Paripati P, Orandle M, Kastenmayer RJ, Tartakovsky M, Rosenthal A, Portevin D, Eum SY, Lahouar S, Gagneux S, Young DB, Flynn JAL, Barry CE III (2013) Differential virulence and disease progression following mycobacterium tuberculosis complex infection of the common marmoset (callithrix jacchus). Infect Immun 81:2909–2919CrossRefPubMedPubMedCentral
8.
go back to reference Via LE, England K, Weiner DM, Schimel D, Zimmerman MD, Dayao E, Chen RY, Dodd LE, Richardson M, Robbins KK, Cai Y, Hammoud D, Herscovitch P, Dartois V, Flynn JAL, Barry CE III (2015) A sterilizing tuberculosis treatment regimen is associated with faster clearance of bacteria in cavitary lesions in marmosets. Antimicrob Agents Chemother 59:4181–4189CrossRefPubMedPubMedCentral Via LE, England K, Weiner DM, Schimel D, Zimmerman MD, Dayao E, Chen RY, Dodd LE, Richardson M, Robbins KK, Cai Y, Hammoud D, Herscovitch P, Dartois V, Flynn JAL, Barry CE III (2015) A sterilizing tuberculosis treatment regimen is associated with faster clearance of bacteria in cavitary lesions in marmosets. Antimicrob Agents Chemother 59:4181–4189CrossRefPubMedPubMedCentral
9.
go back to reference Wallis RS, Kim P, Cole S, Hanna D, Andrade BB, Maeurer M, Schito M, Zumla A (2013) Tuberculosis biomarkers discovery: developments, needs, and challenges. Lancet Infect Dis 13:362–372CrossRefPubMed Wallis RS, Kim P, Cole S, Hanna D, Andrade BB, Maeurer M, Schito M, Zumla A (2013) Tuberculosis biomarkers discovery: developments, needs, and challenges. Lancet Infect Dis 13:362–372CrossRefPubMed
10.
go back to reference Mansoor A, Bagci U, Foster B (2015) Segmentation and image analysis of abnormal lungs at CT: current approaches, challenges, and future trends. Radiographics 35:1056–1076CrossRefPubMedPubMedCentral Mansoor A, Bagci U, Foster B (2015) Segmentation and image analysis of abnormal lungs at CT: current approaches, challenges, and future trends. Radiographics 35:1056–1076CrossRefPubMedPubMedCentral
11.
go back to reference Mitchell JL, Mee ET, Almond NM, Cutler K, Rose NJ (2012) Characterization of MHC haplotypes in a breeding colony of Indonesian cynomolgus macaques reveals a high level of diversity. Immunogenetics 64:123–129CrossRefPubMed Mitchell JL, Mee ET, Almond NM, Cutler K, Rose NJ (2012) Characterization of MHC haplotypes in a breeding colony of Indonesian cynomolgus macaques reveals a high level of diversity. Immunogenetics 64:123–129CrossRefPubMed
12.
go back to reference Sharpe S, White A, Gleeson F, McIntyre A, Smyth D, Clark S, Sarfas C, Laddy D, Rayner E, Hall G, Williams A, Dennis M (2016) Ultra low dose aerosol challenge with Mycobacterium tuberculosis leads to divergent outcomes in rhesus and cynomolgus macaques. Tuberculosis 96:1–12CrossRefPubMed Sharpe S, White A, Gleeson F, McIntyre A, Smyth D, Clark S, Sarfas C, Laddy D, Rayner E, Hall G, Williams A, Dennis M (2016) Ultra low dose aerosol challenge with Mycobacterium tuberculosis leads to divergent outcomes in rhesus and cynomolgus macaques. Tuberculosis 96:1–12CrossRefPubMed
13.
go back to reference Pigeon JG, Raghavarao D (1987) Crossover designs for comparing treatments with a control. Biometrika 74:321–328CrossRef Pigeon JG, Raghavarao D (1987) Crossover designs for comparing treatments with a control. Biometrika 74:321–328CrossRef
14.
go back to reference Hu S, Hoffman EA, Reinhardt JM (2001) Automatic lung segmentation for accurate quantitation of volumetric X-ray CT images. IEEE Trans Med Imaging 20:490–498CrossRefPubMed Hu S, Hoffman EA, Reinhardt JM (2001) Automatic lung segmentation for accurate quantitation of volumetric X-ray CT images. IEEE Trans Med Imaging 20:490–498CrossRefPubMed
15.
go back to reference Ceresa M, Artaechevarria X, Muñoz-Barrutia A, Ortiz-de-Solorzano C (2010) Automatic leakage detection and recovery for airway tree extraction in chest CT images. Proc IEEE Int Symp Biomed Imaging 568–571 Ceresa M, Artaechevarria X, Muñoz-Barrutia A, Ortiz-de-Solorzano C (2010) Automatic leakage detection and recovery for airway tree extraction in chest CT images. Proc IEEE Int Symp Biomed Imaging 568–571
16.
go back to reference Caselles V, Kimmel R, Sapiro G (1997) Geodesic active contours. Int J Comput Vis 22:61–79CrossRef Caselles V, Kimmel R, Sapiro G (1997) Geodesic active contours. Int J Comput Vis 22:61–79CrossRef
17.
go back to reference Bishop C (2006) Pattern Recognition and Machine Learning [Book] Bishop C (2006) Pattern Recognition and Machine Learning [Book]
18.
go back to reference Lambin P, Leijenaar RTH, Deist TM, Peerlings J, de Jong EEC, van Timmeren J, Sanduleanu S, Larue RTHM, Even AJG, Jochems A, van Wijk Y, Woodruff H, van Soest J, Lustberg T, Roelofs E, van Elmpt W, Dekker A, Mottaghy FM, Wildberger JE, Walsh S (2017) Radiomics: the bridge between medical imaging and personalized medicine. Nat Rev Clin Oncol 14(12):749–762CrossRef Lambin P, Leijenaar RTH, Deist TM, Peerlings J, de Jong EEC, van Timmeren J, Sanduleanu S, Larue RTHM, Even AJG, Jochems A, van Wijk Y, Woodruff H, van Soest J, Lustberg T, Roelofs E, van Elmpt W, Dekker A, Mottaghy FM, Wildberger JE, Walsh S (2017) Radiomics: the bridge between medical imaging and personalized medicine. Nat Rev Clin Oncol 14(12):749–762CrossRef
Metadata
Title
Computed Tomography-Based Biomarker for Longitudinal Assessment of Disease Burden in Pulmonary Tuberculosis
Authors
P. M. Gordaliza
A. Muñoz-Barrutia
L. E. Via
S. Sharpe
M. Desco
J. J. Vaquero
Publication date
01-02-2019
Publisher
Springer International Publishing
Published in
Molecular Imaging and Biology / Issue 1/2019
Print ISSN: 1536-1632
Electronic ISSN: 1860-2002
DOI
https://doi.org/10.1007/s11307-018-1215-x

Other articles of this Issue 1/2019

Molecular Imaging and Biology 1/2019 Go to the issue