Skip to main content
Top
Published in: Japanese Journal of Ophthalmology 4/2016

01-07-2016 | Clinical Investigation

Association between SCO2 mutation and extreme myopia in Japanese patients

Authors: Tomotaka Wakazono, Masahiro Miyake, Kenji Yamashiro, Munemitsu Yoshikawa, Nagahisa Yoshimura

Published in: Japanese Journal of Ophthalmology | Issue 4/2016

Login to get access

Abstract

Purpose

To investigate the role of SCO2 in extreme myopia of Japanese patients.

Methods

In total, 101 Japanese patients with extreme myopia (axial length of ≥30 mm) OU at the Kyoto University Hospital were included in this study. Exon 2 of SCO2 was sequenced by conventional Sanger sequencing. The detected variants were assessed using in silico prediction programs: SIFT, PolyPhen-2 and MutationTaster. To determine the frequency of the mutations in normal subjects, we referred to the 1000 Genomes Project data and the Human Genetic Variation Database (HGVD) in the Human Genetic Variation Browser.

Results

The average age of the participants was 62.9 ± 12.7 years. There were 31 males (30.7 %) and 70 females. Axial lengths were 31.76 ± 1.17 mm OD and 31.40 ± 1.07 mm OS, and 176 eyes (87.6 %) out of 201 eyes had myopic maculopathy of grade 2 or more. Among the 101 extremely myopic patients, one mutation (c.290 C > T;p.Ala97Val) in SCO2 was detected. This mutation was not found in the 1000 Genomes Project data or HGVD data. Variant type of the mutation was nonsynonymous. Although the SIFT prediction score was 0.350, the PolyPhen-2 probability was 0.846, thus predicting its pathogenicity to be possibly damaging. MutationTaster PhyloP was 1.268, suggesting that the mutation is conserved.

Conclusions

We identified one novel possibility of an extreme myopia-causing mutation in SCO2. No other disease-causing mutation was found in 101 extremely myopic Japanese patients, suggesting that SCO2 plays a limited role in Japanese extreme myopia. Further investigation is required for better understanding of extreme myopia.
Literature
1.
go back to reference Pan CW, Ramamurthy D, Saw SM. Worldwide prevalence and risk factors for myopia. Ophthalmic Physiol Opt. 2012;32:3–16.CrossRefPubMed Pan CW, Ramamurthy D, Saw SM. Worldwide prevalence and risk factors for myopia. Ophthalmic Physiol Opt. 2012;32:3–16.CrossRefPubMed
2.
go back to reference Saw SM, Gazzard G, Shih-Yen EC, Chua WH. Myopia and associated pathological complications. Ophthalmic Physiol Opt. 2005;25:381–91.CrossRefPubMed Saw SM, Gazzard G, Shih-Yen EC, Chua WH. Myopia and associated pathological complications. Ophthalmic Physiol Opt. 2005;25:381–91.CrossRefPubMed
3.
go back to reference Roberts CB, Hiratsuka Y, Yamada M, Pezzullo ML, Yates K, Takano S, et al. Economic cost of visual impairment in Japan. Arch Ophthalmol. 2010;128:766–71.CrossRefPubMed Roberts CB, Hiratsuka Y, Yamada M, Pezzullo ML, Yates K, Takano S, et al. Economic cost of visual impairment in Japan. Arch Ophthalmol. 2010;128:766–71.CrossRefPubMed
4.
go back to reference Mutti DO, Cooper ME, O’Brien S, Jones LA, Marazita ML, Murray JC, et al. Candidate gene and locus analysis of myopia. Mol Vis. 2007;13:1012–9.PubMedPubMedCentral Mutti DO, Cooper ME, O’Brien S, Jones LA, Marazita ML, Murray JC, et al. Candidate gene and locus analysis of myopia. Mol Vis. 2007;13:1012–9.PubMedPubMedCentral
5.
go back to reference Nakanishi H, Hayashi H, Yamada R, Yamashiro K, Nakata I, Shimada N, et al. Single-nucleotide polymorphisms in the promoter region of matrix metalloproteinase-1, -2, and -3 in Japanese with high myopia. Invest Ophthalmol Vis Sci. 2010;51:4432–6.CrossRefPubMed Nakanishi H, Hayashi H, Yamada R, Yamashiro K, Nakata I, Shimada N, et al. Single-nucleotide polymorphisms in the promoter region of matrix metalloproteinase-1, -2, and -3 in Japanese with high myopia. Invest Ophthalmol Vis Sci. 2010;51:4432–6.CrossRefPubMed
6.
go back to reference Miyake M, Yamashiro K, Nakanishi H, Nakata I, Akagi-Kurashige Y, Tsujikawa A, et al. Association of paired box 6 with high myopia in Japanese. Mol Vis. 2012;18:2726–35.PubMedPubMedCentral Miyake M, Yamashiro K, Nakanishi H, Nakata I, Akagi-Kurashige Y, Tsujikawa A, et al. Association of paired box 6 with high myopia in Japanese. Mol Vis. 2012;18:2726–35.PubMedPubMedCentral
7.
go back to reference Miyake M, Yamashiro K, Nakanishi H, Nakata I, Akagi-Kurashige Y, Tsujikawa A, et al. Insulin-like growth factor 1 is not associated with high myopia in a large Japanese cohort. Mol Vis. 2013;19:1074–81.PubMedPubMedCentral Miyake M, Yamashiro K, Nakanishi H, Nakata I, Akagi-Kurashige Y, Tsujikawa A, et al. Insulin-like growth factor 1 is not associated with high myopia in a large Japanese cohort. Mol Vis. 2013;19:1074–81.PubMedPubMedCentral
8.
go back to reference Oishi M, Yamashiro K, Miyake M, Akagi-Kurashige Y, Kumagai K, Nakata I, et al. Association between ZIC2, RASGRF1, and SHISA6 genes and high myopia in Japanese subjects. Invest Ophthalmol Vis Sci. 2013;54:7492–7.CrossRefPubMed Oishi M, Yamashiro K, Miyake M, Akagi-Kurashige Y, Kumagai K, Nakata I, et al. Association between ZIC2, RASGRF1, and SHISA6 genes and high myopia in Japanese subjects. Invest Ophthalmol Vis Sci. 2013;54:7492–7.CrossRefPubMed
9.
go back to reference Yoshikawa M, Yamashiro K, Miyake M, Oishi M, Akagi-Kurashige Y, Kumagai K, et al. Comprehensive replication of the relationship between myopia-related genes and refractive errors in a large Japanese cohort. Invest Ophthalmol Vis Sci. 2014;55:7343–54.CrossRefPubMed Yoshikawa M, Yamashiro K, Miyake M, Oishi M, Akagi-Kurashige Y, Kumagai K, et al. Comprehensive replication of the relationship between myopia-related genes and refractive errors in a large Japanese cohort. Invest Ophthalmol Vis Sci. 2014;55:7343–54.CrossRefPubMed
10.
go back to reference Nakanishi H, Yamada R, Gotoh N, Hayashi H, Yamashiro K, Shimada N, et al. A genome-wide association analysis identified a novel susceptible locus for pathological myopia at 11q24.1. PLoS Genet. 2009;5:e1000660.CrossRefPubMedPubMedCentral Nakanishi H, Yamada R, Gotoh N, Hayashi H, Yamashiro K, Shimada N, et al. A genome-wide association analysis identified a novel susceptible locus for pathological myopia at 11q24.1. PLoS Genet. 2009;5:e1000660.CrossRefPubMedPubMedCentral
11.
go back to reference Li YJ, Goh L, Khor CC, Fan Q, Yu M, Han S, et al. Genome-wide association studies reveal genetic variants in CTNND2 for high myopia in Singapore Chinese. Ophthalmology. 2011;118:368–75.CrossRefPubMed Li YJ, Goh L, Khor CC, Fan Q, Yu M, Han S, et al. Genome-wide association studies reveal genetic variants in CTNND2 for high myopia in Singapore Chinese. Ophthalmology. 2011;118:368–75.CrossRefPubMed
12.
go back to reference Shi Y, Qu J, Zhang D, Zhao P, Zhang Q, Tam PO, et al. Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population. Am J Hum Genet. 2011;88:805–13.CrossRefPubMedPubMedCentral Shi Y, Qu J, Zhang D, Zhao P, Zhang Q, Tam PO, et al. Genetic variants at 13q12.12 are associated with high myopia in the Han Chinese population. Am J Hum Genet. 2011;88:805–13.CrossRefPubMedPubMedCentral
13.
go back to reference Li Z, Qu J, Xu X, Zhou X, Zou H, Wang N, et al. A genome-wide association study reveals association between common variants in an intergenic region of 4q25 and high-grade myopia in the Chinese Han population. Hum Mol Genet. 2011;20:2861–8.CrossRefPubMed Li Z, Qu J, Xu X, Zhou X, Zou H, Wang N, et al. A genome-wide association study reveals association between common variants in an intergenic region of 4q25 and high-grade myopia in the Chinese Han population. Hum Mol Genet. 2011;20:2861–8.CrossRefPubMed
14.
go back to reference Meng W, Butterworth J, Bradley DT, Hughes AE, Soler V, Calvas P, et al. A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population. Invest Ophthalmol Vis Sci. 2012;53:7983–8.CrossRefPubMed Meng W, Butterworth J, Bradley DT, Hughes AE, Soler V, Calvas P, et al. A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population. Invest Ophthalmol Vis Sci. 2012;53:7983–8.CrossRefPubMed
15.
go back to reference Shi Y, Gong B, Chen L, Zuo X, Liu X, Tam PO, et al. A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population. Hum Mol Genet. 2013;22:2325–33.CrossRefPubMed Shi Y, Gong B, Chen L, Zuo X, Liu X, Tam PO, et al. A genome-wide meta-analysis identifies two novel loci associated with high myopia in the Han Chinese population. Hum Mol Genet. 2013;22:2325–33.CrossRefPubMed
16.
go back to reference Khor CC, Miyake M, Chen LJ, Shi Y, Barathi VA, Qiao F, et al. Genome-wide association study identifies ZFHX1B as a susceptibility locus for severe myopia. Hum Mol Genet. 2013;22:5288–94.CrossRefPubMed Khor CC, Miyake M, Chen LJ, Shi Y, Barathi VA, Qiao F, et al. Genome-wide association study identifies ZFHX1B as a susceptibility locus for severe myopia. Hum Mol Genet. 2013;22:5288–94.CrossRefPubMed
17.
18.
go back to reference Tran-Viet KN, St Germain E, Soler V, Powell C, Lim SH, Klemm T, et al. Study of a US cohort supports the role of ZNF644 and high-grade myopia susceptibility. Mol Vis. 2012;18:937–44.PubMedPubMedCentral Tran-Viet KN, St Germain E, Soler V, Powell C, Lim SH, Klemm T, et al. Study of a US cohort supports the role of ZNF644 and high-grade myopia susceptibility. Mol Vis. 2012;18:937–44.PubMedPubMedCentral
19.
go back to reference Xiang X, Wang T, Tong P, Li Y, Guo H, Wan A, et al. New ZNF644 mutations identified in patients with high myopia. Mol Vis. 2014;20:939–46.PubMedPubMedCentral Xiang X, Wang T, Tong P, Li Y, Guo H, Wan A, et al. New ZNF644 mutations identified in patients with high myopia. Mol Vis. 2014;20:939–46.PubMedPubMedCentral
20.
go back to reference Jiang D, Li J, Xiao X, Li S, Jia X, Sun W, et al. Detection of mutations in LRPAP1, CTSH, LEPREL1, ZNF644, SLC39A5, and SCO2 in 298 families with early-onset high myopia by exome sequencing. Invest Ophthalmol Vis Sci. 2015;56:339–45.CrossRef Jiang D, Li J, Xiao X, Li S, Jia X, Sun W, et al. Detection of mutations in LRPAP1, CTSH, LEPREL1, ZNF644, SLC39A5, and SCO2 in 298 families with early-onset high myopia by exome sequencing. Invest Ophthalmol Vis Sci. 2015;56:339–45.CrossRef
21.
go back to reference Tran-Viet KN, Powell C, Barathi VA, Klemm T, Maurer-Stroh S, Limviphuvadh V, et al. Mutations in SCO2 are associated with autosomal-dominant high-grade myopia. Am J Hum Genet. 2013;92:820–6.CrossRefPubMedPubMedCentral Tran-Viet KN, Powell C, Barathi VA, Klemm T, Maurer-Stroh S, Limviphuvadh V, et al. Mutations in SCO2 are associated with autosomal-dominant high-grade myopia. Am J Hum Genet. 2013;92:820–6.CrossRefPubMedPubMedCentral
22.
go back to reference Zhao F, Wu J, Xue A, Su Y, Wang X, Lu X, et al. Exome sequencing reveals CCDC111 mutation associated with high myopia. Hum Genet. 2013;132:913–21.CrossRefPubMed Zhao F, Wu J, Xue A, Su Y, Wang X, Lu X, et al. Exome sequencing reveals CCDC111 mutation associated with high myopia. Hum Genet. 2013;132:913–21.CrossRefPubMed
23.
go back to reference Richards AJ, Yates JR, Williams R, Payne SJ, Pope FM, Scott JD, et al. A family with Stickler syndrome type 2 has a mutation in the COL11A1 gene resulting in the substitution of glycine 97 by valine in alpha 1 (XI) collagen. Hum Mol Genet. 1996;5:1339–43.CrossRefPubMed Richards AJ, Yates JR, Williams R, Payne SJ, Pope FM, Scott JD, et al. A family with Stickler syndrome type 2 has a mutation in the COL11A1 gene resulting in the substitution of glycine 97 by valine in alpha 1 (XI) collagen. Hum Mol Genet. 1996;5:1339–43.CrossRefPubMed
25.
go back to reference Martin S, Richards AJ, Yates JR, Scott JD, Pope M, Snead MP. Stickler syndrome: further mutations in COL11A1 and evidence for additional locus heterogeneity. Eur J Hum Genet. 1999;7:807–14.CrossRefPubMed Martin S, Richards AJ, Yates JR, Scott JD, Pope M, Snead MP. Stickler syndrome: further mutations in COL11A1 and evidence for additional locus heterogeneity. Eur J Hum Genet. 1999;7:807–14.CrossRefPubMed
26.
go back to reference Yoshida S, Yamaji Y, Kuwahara R, Yoshida A, Hisatomi T, Ueno A, et al. Novel mutation in exon 2 of COL2A1 gene in Japanese family with Stickler Syndrome type I. Eye (Lond). 2006;20:743–5.CrossRefPubMed Yoshida S, Yamaji Y, Kuwahara R, Yoshida A, Hisatomi T, Ueno A, et al. Novel mutation in exon 2 of COL2A1 gene in Japanese family with Stickler Syndrome type I. Eye (Lond). 2006;20:743–5.CrossRefPubMed
27.
go back to reference Hoornaert KP, Vereecke I, Dewinter C, Rosenberg T, Beemer FA, Leroy JG, et al. Stickler syndrome caused by COL2A1 mutations: genotype-phenotype correlation in a series of 100 patients. Eur J Hum Genet. 2010;18:872–80.CrossRefPubMedPubMedCentral Hoornaert KP, Vereecke I, Dewinter C, Rosenberg T, Beemer FA, Leroy JG, et al. Stickler syndrome caused by COL2A1 mutations: genotype-phenotype correlation in a series of 100 patients. Eur J Hum Genet. 2010;18:872–80.CrossRefPubMedPubMedCentral
28.
go back to reference Acke FR, Malfait F, Vanakker OM, Steyaert W, De Leeneer K, Mortier G, et al. Novel pathogenic COL11A1/COL11A2 variants in Stickler syndrome detected by targeted NGS and exome sequencing. Mol Genet Metab. 2014;113:230–5.CrossRefPubMed Acke FR, Malfait F, Vanakker OM, Steyaert W, De Leeneer K, Mortier G, et al. Novel pathogenic COL11A1/COL11A2 variants in Stickler syndrome detected by targeted NGS and exome sequencing. Mol Genet Metab. 2014;113:230–5.CrossRefPubMed
29.
go back to reference Alzahrani F. Al Hazzaa SA, Tayeb H, Alkuraya FS. LOXL3, encoding lysyl oxidase-like 3, is mutated in a family with autosomal recessive Stickler syndrome. Hum Genet. 2015;134:451–3.CrossRefPubMed Alzahrani F. Al Hazzaa SA, Tayeb H, Alkuraya FS. LOXL3, encoding lysyl oxidase-like 3, is mutated in a family with autosomal recessive Stickler syndrome. Hum Genet. 2015;134:451–3.CrossRefPubMed
30.
go back to reference Biggin A, Holman K, Brett M, Bennetts B, Adès L. Detection of thirty novel FBN1 mutations in patients with Marfan syndrome or a related fibrillinopathy. Hum Mutat. 2004;23:99.CrossRefPubMed Biggin A, Holman K, Brett M, Bennetts B, Adès L. Detection of thirty novel FBN1 mutations in patients with Marfan syndrome or a related fibrillinopathy. Hum Mutat. 2004;23:99.CrossRefPubMed
31.
go back to reference Micheal S, Khan MI, Akhtar F, Weiss MM, Islam F, Ali M, et al. Identification of a novel FBN1 gene mutation in a large Pakistani family with Marfan syndrome. Mol Vis. 2012;18:1918–26.PubMedPubMedCentral Micheal S, Khan MI, Akhtar F, Weiss MM, Islam F, Ali M, et al. Identification of a novel FBN1 gene mutation in a large Pakistani family with Marfan syndrome. Mol Vis. 2012;18:1918–26.PubMedPubMedCentral
32.
go back to reference Bourens M, Boulet A, Leary SC, Barrientos A. Human COX20 cooperates with SCO1 and SCO2 to mature COX2 and promote the assembly of cytochrome c oxidase. Hum Mol Genet. 2014;23:2901–13.CrossRefPubMedPubMedCentral Bourens M, Boulet A, Leary SC, Barrientos A. Human COX20 cooperates with SCO1 and SCO2 to mature COX2 and promote the assembly of cytochrome c oxidase. Hum Mol Genet. 2014;23:2901–13.CrossRefPubMedPubMedCentral
33.
go back to reference Ohno-Matsui K, Kawasaki R, Jonas JB, Gemmy Cheung CM, Saw SM, Verhoeven VJ, et al. International photographic classification and grading system for myopic maculopathy. Am J Ophthalmol. 2015;159:877–83.e7.CrossRef Ohno-Matsui K, Kawasaki R, Jonas JB, Gemmy Cheung CM, Saw SM, Verhoeven VJ, et al. International photographic classification and grading system for myopic maculopathy. Am J Ophthalmol. 2015;159:877–83.e7.CrossRef
34.
go back to reference Papadopoulou LC, Sue CM, Davidson MM, Tanji K, Nishino I, Sadlock JE, et al. Fatal infantile cardioencephalomyopathy with COX deficiency and mutations in SCO2, a COX assembly gene. Nat Genet. 1999;23:333–7.CrossRefPubMed Papadopoulou LC, Sue CM, Davidson MM, Tanji K, Nishino I, Sadlock JE, et al. Fatal infantile cardioencephalomyopathy with COX deficiency and mutations in SCO2, a COX assembly gene. Nat Genet. 1999;23:333–7.CrossRefPubMed
Metadata
Title
Association between SCO2 mutation and extreme myopia in Japanese patients
Authors
Tomotaka Wakazono
Masahiro Miyake
Kenji Yamashiro
Munemitsu Yoshikawa
Nagahisa Yoshimura
Publication date
01-07-2016
Publisher
Springer Japan
Published in
Japanese Journal of Ophthalmology / Issue 4/2016
Print ISSN: 0021-5155
Electronic ISSN: 1613-2246
DOI
https://doi.org/10.1007/s10384-016-0442-4

Other articles of this Issue 4/2016

Japanese Journal of Ophthalmology 4/2016 Go to the issue