Skip to main content
Top
Published in: Journal of Digital Imaging 2/2020

01-04-2020

A Holistically-Nested U-Net: Surgical Instrument Segmentation Based on Convolutional Neural Network

Authors: Lingtao Yu, Pengcheng Wang, Xiaoyan Yu, Yusheng Yan, Yongqiang Xia

Published in: Journal of Imaging Informatics in Medicine | Issue 2/2020

Login to get access

Abstract

Surgical instrument segmentation is an essential task in the domain of computer-assisted surgical system. It is critical to increase the context-awareness of surgeons during the operation. We propose a new model based on the U-Net architecture for surgical instrument segmentation, which aggregates multi-scale feature maps and has cascaded dilated convolution layers. The model adopts dense upsampling convolution instead of deconvolution for upsampling. We set the side loss function on each side-output layer. The loss function includes an output loss function and all side loss functions to supervise the training of each layer. To validate our model, we compare our proposed model with advanced architecture U-Net in the dataset consisting of laparoscopy images from multiple surgical operations. Experiment results demonstrate that our model achieves good performance.
Literature
4.
go back to reference Doignon C, Nageotte F, De Mathelin M: Detection of grey regions in color images: Application to the segmentation of a surgical instrument in robotized laparoscopy, in: 2004 IEEE/RSJ Int. Conf. Intell. Robot. Syst. (IEEE Cat. No.04CH37566), IEEE, n.d.: pp. 3394–3399. https://doi.org/10.1109/IROS.2004.1389941 Doignon C, Nageotte F, De Mathelin M: Detection of grey regions in color images: Application to the segmentation of a surgical instrument in robotized laparoscopy, in: 2004 IEEE/RSJ Int. Conf. Intell. Robot. Syst. (IEEE Cat. No.04CH37566), IEEE, n.d.: pp. 3394–3399. https://​doi.​org/​10.​1109/​IROS.​2004.​1389941
13.
go back to reference Garcia-Peraza-Herrera LC, Li W, Fidon L, Gruijthuijsen C, Devreker A, Attilakos G, Deprest J, Vander Poorten E, Stoyanov D, Vercauteren T, Ourselin S: ToolNet: Holistically-nested real-time segmentation of robotic surgical tools, in: 2017 IEEE/RSJ Int. Conf. Intell. Robot. Syst., IEEE, 2017: pp. 5717–5722. https://doi.org/10.1109/IROS.2017.8206462 Garcia-Peraza-Herrera LC, Li W, Fidon L, Gruijthuijsen C, Devreker A, Attilakos G, Deprest J, Vander Poorten E, Stoyanov D, Vercauteren T, Ourselin S: ToolNet: Holistically-nested real-time segmentation of robotic surgical tools, in: 2017 IEEE/RSJ Int. Conf. Intell. Robot. Syst., IEEE, 2017: pp. 5717–5722. https://​doi.​org/​10.​1109/​IROS.​2017.​8206462
14.
go back to reference García-Peraza-Herrera LC, Li W, Gruijthuijsen C, Devreker A, Attilakos G, Deprest J, Vander Poorten E, Stoyanov D, Vercauteren T, Ourselin S: Real-time segmentation of non-rigid surgical tools based on deep learning and tracking, in: International Workshop on Computer-Assisted and Robotic Endoscopy (CARE), 2017: pp. 84–95. https://doi.org/10.1007/978-3-319-54057-3_8 CrossRef García-Peraza-Herrera LC, Li W, Gruijthuijsen C, Devreker A, Attilakos G, Deprest J, Vander Poorten E, Stoyanov D, Vercauteren T, Ourselin S: Real-time segmentation of non-rigid surgical tools based on deep learning and tracking, in: International Workshop on Computer-Assisted and Robotic Endoscopy (CARE), 2017: pp. 84–95. https://​doi.​org/​10.​1007/​978-3-319-54057-3_​8 CrossRef
16.
go back to reference Allan M, Shvets A, Kurmann T, Zhang Z, Duggal R, Su Y-H, Rieke N, Laina I, Kalavakonda N, Bodenstedt S, Herrera L, Li W, Iglovikov V, Luo H, Yang J, Stoyanov D, Maier-Hein L, Speidel S, Azizian M: 2017 Robotic Instrument Segmentation Challenge, 2019. http://arxiv.org/abs/1902.06426 (accessed 23 Feb 2019) Allan M, Shvets A, Kurmann T, Zhang Z, Duggal R, Su Y-H, Rieke N, Laina I, Kalavakonda N, Bodenstedt S, Herrera L, Li W, Iglovikov V, Luo H, Yang J, Stoyanov D, Maier-Hein L, Speidel S, Azizian M: 2017 Robotic Instrument Segmentation Challenge, 2019. http://​arxiv.​org/​abs/​1902.​06426 (accessed 23 Feb 2019)
Metadata
Title
A Holistically-Nested U-Net: Surgical Instrument Segmentation Based on Convolutional Neural Network
Authors
Lingtao Yu
Pengcheng Wang
Xiaoyan Yu
Yusheng Yan
Yongqiang Xia
Publication date
01-04-2020
Publisher
Springer International Publishing
Published in
Journal of Imaging Informatics in Medicine / Issue 2/2020
Print ISSN: 2948-2925
Electronic ISSN: 2948-2933
DOI
https://doi.org/10.1007/s10278-019-00277-1

Other articles of this Issue 2/2020

Journal of Digital Imaging 2/2020 Go to the issue