Skip to main content
Top
Published in: Journal of Digital Imaging 1/2019

01-02-2019

Tumor Identification in Colorectal Histology Images Using a Convolutional Neural Network

Authors: Hongjun Yoon, Joohyung Lee, Ji Eun Oh, Hong Rae Kim, Seonhye Lee, Hee Jin Chang, Dae Kyung Sohn

Published in: Journal of Imaging Informatics in Medicine | Issue 1/2019

Login to get access

Abstract

Colorectal cancer (CRC) is a major global health concern. Its early diagnosis is extremely important, as it determines treatment options and strongly influences the length of survival. Histologic diagnosis can be made by pathologists based on images of tissues obtained from a colonoscopic biopsy. Convolutional neural networks (CNNs)—i.e., deep neural networks (DNNs) specifically adapted to image data—have been employed to effectively classify or locate tumors in many types of cancer. Colorectal histology images of 28 normal and 29 tumor samples were obtained from the National Cancer Center, South Korea, and cropped into 6806 normal and 3474 tumor images. We developed five modifications of the system from the Visual Geometry Group (VGG), the winning entry in the classification task in the 2014 ImageNet Large Scale Visual Recognition Competition (ILSVRC) and examined them in two experiments. In the first experiment, we determined the best modified VGG configuration for our partial dataset, resulting in accuracies of 82.50%, 87.50%, 87.50%, 91.40%, and 94.30%, respectively. In the second experiment, the best modified VGG configuration was applied to evaluate the performance of the CNN model. Subsequently, using the entire dataset on the modified VGG-E configuration, the highest results for accuracy, loss, sensitivity, and specificity, respectively, were 93.48%, 0.4385, 95.10%, and 92.76%, which equates to correctly classifying 294 normal images out of 309 and 667 tumor images out of 719.
Literature
1.
go back to reference Ferlay J, Soerjomataram I, Dikshit R, Eser S, Mathers C, Rebelo M, Parkin DM, Forman D, Bray F: Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012. Int J Cancer 136(5):E359–E386, 2015CrossRef Ferlay J, Soerjomataram I, Dikshit R, Eser S, Mathers C, Rebelo M, Parkin DM, Forman D, Bray F: Cancer incidence and mortality worldwide: Sources, methods and major patterns in GLOBOCAN 2012. Int J Cancer 136(5):E359–E386, 2015CrossRef
2.
go back to reference Jung KW, Wong YJ, Kong HJ, Lee ES: Community of Population-Based Regional Cancer Registries: Cancer statistics in Korea: Incidence, mortality, survival, and prevalence in 2015. Cancer Res Treat 50:303–316, 2018CrossRefPubMedPubMedCentral Jung KW, Wong YJ, Kong HJ, Lee ES: Community of Population-Based Regional Cancer Registries: Cancer statistics in Korea: Incidence, mortality, survival, and prevalence in 2015. Cancer Res Treat 50:303–316, 2018CrossRefPubMedPubMedCentral
6.
go back to reference Bengio Y: Learning deep architectures for AI. Boston: Now Publishers, Inc., 2009CrossRef Bengio Y: Learning deep architectures for AI. Boston: Now Publishers, Inc., 2009CrossRef
7.
go back to reference Nicholson CV, Gibson A. A Beginner’s guide to deep convolutional neural networks (CNNs). What’s the difference between artificial intelligence (AI), machine learning and deep learning?. Deeplearning4j: Open-source, Distributed Deep Learning for the JVM. Accessed June 04, 2018. https://deeplearning4j.org/convolutionalnetwork Nicholson CV, Gibson A. A Beginner’s guide to deep convolutional neural networks (CNNs). What’s the difference between artificial intelligence (AI), machine learning and deep learning?. Deeplearning4j: Open-source, Distributed Deep Learning for the JVM. Accessed June 04, 2018. https://​deeplearning4j.​org/​convolutionalnet​work
8.
go back to reference Sirinukunwattana K, Ahmed Raza SE, Tsang Y-W, Snead DRJ, Cree IA, Rajpoot NM: Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Trans Med Imaging 35(5):1196–1206, 2016CrossRefPubMed Sirinukunwattana K, Ahmed Raza SE, Tsang Y-W, Snead DRJ, Cree IA, Rajpoot NM: Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Trans Med Imaging 35(5):1196–1206, 2016CrossRefPubMed
9.
go back to reference Deng J, Dong W, Socher R, Li LJ, Li K, Fei-Fei L: ImageNet: A large-scale hierarchical image database. IEEE Conf Computer Vision Pattern Recogn (CVPR2009) 248–255, 2009 Deng J, Dong W, Socher R, Li LJ, Li K, Fei-Fei L: ImageNet: A large-scale hierarchical image database. IEEE Conf Computer Vision Pattern Recogn (CVPR2009) 248–255, 2009
14.
go back to reference Géron ACA: Hands-on machine learning with Scikit-Learn and TensorFlow: Concepts, tools, and techniques to build intelligent systems. California: O’Reilly Media, 2017 Géron ACA: Hands-on machine learning with Scikit-Learn and TensorFlow: Concepts, tools, and techniques to build intelligent systems. California: O’Reilly Media, 2017
Metadata
Title
Tumor Identification in Colorectal Histology Images Using a Convolutional Neural Network
Authors
Hongjun Yoon
Joohyung Lee
Ji Eun Oh
Hong Rae Kim
Seonhye Lee
Hee Jin Chang
Dae Kyung Sohn
Publication date
01-02-2019
Publisher
Springer International Publishing
Published in
Journal of Imaging Informatics in Medicine / Issue 1/2019
Print ISSN: 2948-2925
Electronic ISSN: 2948-2933
DOI
https://doi.org/10.1007/s10278-018-0112-9

Other articles of this Issue 1/2019

Journal of Digital Imaging 1/2019 Go to the issue