Skip to main content
Top
Published in: neurogenetics 1/2013

Open Access 01-02-2013 | Short Communication

Comprehensive cytogenomic profile of the in vitro neuronal model SH-SY5Y

Authors: Mohammed Yusuf, Kay Leung, Keith J. Morris, Emanuela V. Volpi

Published in: Neurogenetics | Issue 1/2013

Login to get access

Abstract

The widely studied SH-SY5Y human neuroblastoma cell line provides a classic example of how a cancer cell line can be instrumental for discoveries of broad biological and clinical significance. An important feature of the SH-SY5Y cells is their ability to differentiate into a functionally mature neuronal phenotype. This property has conferred them the potential to be used as an in vitro model for studies of neurodegenerative and neurodevelopmental disorders. Here, we present a comprehensive assessment of the SH-SY5Y cytogenomic profile. Our results advocate for molecular cytogenetic data to inform the use of cancer cell lines in research.
Literature
1.
go back to reference Biedler JL, Spengler BA (1976) A novel chromosome abnormality in human neuroblastoma and antifolate-resistant Chinese hamster cell lives in culture. J Natl Cancer Inst 57(3):683–695PubMed Biedler JL, Spengler BA (1976) A novel chromosome abnormality in human neuroblastoma and antifolate-resistant Chinese hamster cell lives in culture. J Natl Cancer Inst 57(3):683–695PubMed
2.
go back to reference Ross RA, Spengler BA, Biedler JL (1983) Coordinate morphological and biochemical interconversion of human neuroblastoma cells. J Natl Cancer Inst 71(4):741–747PubMed Ross RA, Spengler BA, Biedler JL (1983) Coordinate morphological and biochemical interconversion of human neuroblastoma cells. J Natl Cancer Inst 71(4):741–747PubMed
3.
go back to reference Cohen N et al (2003) Clonal expansion and not cell interconversion is the basis for the neuroblast and nonneuronal types of the SK-N-SH neuroblastoma cell line. Cancer Genet Cytogenet 143(1):80–84PubMedCrossRef Cohen N et al (2003) Clonal expansion and not cell interconversion is the basis for the neuroblast and nonneuronal types of the SK-N-SH neuroblastoma cell line. Cancer Genet Cytogenet 143(1):80–84PubMedCrossRef
4.
go back to reference Encinas M et al (2000) Sequential treatment of SH-SY5Y cells with retinoic acid and brain-derived neurotrophic factor gives rise to fully differentiated, neurotrophic factor-dependent, human neuron-like cells. J Neurochem 75(3):991–1003PubMedCrossRef Encinas M et al (2000) Sequential treatment of SH-SY5Y cells with retinoic acid and brain-derived neurotrophic factor gives rise to fully differentiated, neurotrophic factor-dependent, human neuron-like cells. J Neurochem 75(3):991–1003PubMedCrossRef
5.
go back to reference Myers TA et al (2008) Closing the phenotypic gap between transformed neuronal cell lines in culture and untransformed neurons. J Neurosci Methods 174(1):31–41PubMedCrossRef Myers TA et al (2008) Closing the phenotypic gap between transformed neuronal cell lines in culture and untransformed neurons. J Neurosci Methods 174(1):31–41PubMedCrossRef
6.
go back to reference Constantinescu R et al (2007) Neuronal differentiation and long-term culture of the human neuroblastoma line SH-SY5Y. J Neural Transm Suppl 72:17–28PubMedCrossRef Constantinescu R et al (2007) Neuronal differentiation and long-term culture of the human neuroblastoma line SH-SY5Y. J Neural Transm Suppl 72:17–28PubMedCrossRef
7.
go back to reference Habig K et al (2008) RNA interference of LRRK2-microarray expression analysis of a Parkinson’s disease key player. Neurogenetics 9(2):83–94PubMedCrossRef Habig K et al (2008) RNA interference of LRRK2-microarray expression analysis of a Parkinson’s disease key player. Neurogenetics 9(2):83–94PubMedCrossRef
8.
go back to reference Klinkenberg M et al (2012) Restriction of trophic factors and nutrients induces PARKIN expression. Neurogenetics 13:9–21PubMedCrossRef Klinkenberg M et al (2012) Restriction of trophic factors and nutrients induces PARKIN expression. Neurogenetics 13:9–21PubMedCrossRef
9.
go back to reference Xie HR, Hu LS, Li GY (2010) SH-SY5Y human neuroblastoma cell line: in vitro cell model of dopaminergic neurons in Parkinson’s disease. Chin Med J (Engl) 123(8):1086–1092 Xie HR, Hu LS, Li GY (2010) SH-SY5Y human neuroblastoma cell line: in vitro cell model of dopaminergic neurons in Parkinson’s disease. Chin Med J (Engl) 123(8):1086–1092
10.
go back to reference Agholme L et al (2010) An in vitro model for neuroscience: differentiation of SH-SY5Y cells into cells with morphological and biochemical characteristics of mature neurons. J Alzheimers Dis 20(4):1069–1082PubMed Agholme L et al (2010) An in vitro model for neuroscience: differentiation of SH-SY5Y cells into cells with morphological and biochemical characteristics of mature neurons. J Alzheimers Dis 20(4):1069–1082PubMed
11.
go back to reference Schroeder DI et al (2011) Large-scale methylation domains mark a functional subset of neuronally expressed genes. Genome Res 21(10):1583–1591PubMedCrossRef Schroeder DI et al (2011) Large-scale methylation domains mark a functional subset of neuronally expressed genes. Genome Res 21(10):1583–1591PubMedCrossRef
12.
go back to reference Yasui DH et al (2011) 15q11.2-13.3 chromatin analysis reveals epigenetic regulation of CHRNA7 with deficiencies in Rett and autism brain. Hum Mol Genet 20(22):4311–4323PubMedCrossRef Yasui DH et al (2011) 15q11.2-13.3 chromatin analysis reveals epigenetic regulation of CHRNA7 with deficiencies in Rett and autism brain. Hum Mol Genet 20(22):4311–4323PubMedCrossRef
13.
go back to reference Schneider L et al (2011) Differentiation of SH-SY5Y cells to a neuronal phenotype changes cellular bioenergetics and the response to oxidative stress. Free Radic Biol Med 51(11):2007–2017PubMedCrossRef Schneider L et al (2011) Differentiation of SH-SY5Y cells to a neuronal phenotype changes cellular bioenergetics and the response to oxidative stress. Free Radic Biol Med 51(11):2007–2017PubMedCrossRef
14.
go back to reference Christensen J et al (2011) Differentiated neuroblastoma cells provide a highly efficient model for studies of productive varicella-zoster virus infection of neuronal cells. J Virol 85(16):8436–8442PubMedCrossRef Christensen J et al (2011) Differentiated neuroblastoma cells provide a highly efficient model for studies of productive varicella-zoster virus infection of neuronal cells. J Virol 85(16):8436–8442PubMedCrossRef
15.
go back to reference Ambros PF et al (2009) International consensus for neuroblastoma molecular diagnostics: report from the International Neuroblastoma Risk Group (INRG) Biology Committee. Br J Cancer 100(9):1471–1482PubMedCrossRef Ambros PF et al (2009) International consensus for neuroblastoma molecular diagnostics: report from the International Neuroblastoma Risk Group (INRG) Biology Committee. Br J Cancer 100(9):1471–1482PubMedCrossRef
16.
go back to reference George RE et al (2007) Genome-wide analysis of neuroblastomas using high-density single nucleotide polymorphism arrays. PLoS One 2(2):e255PubMedCrossRef George RE et al (2007) Genome-wide analysis of neuroblastomas using high-density single nucleotide polymorphism arrays. PLoS One 2(2):e255PubMedCrossRef
17.
go back to reference Schleiermacher G et al (2010) Accumulation of segmental alterations determines progression in neuroblastoma. J Clin Oncol 28(19):3122–3130PubMedCrossRef Schleiermacher G et al (2010) Accumulation of segmental alterations determines progression in neuroblastoma. J Clin Oncol 28(19):3122–3130PubMedCrossRef
18.
go back to reference Schleiermacher G et al (2011) Segmental chromosomal alterations lead to a higher risk of relapse in infants with MYCN-non-amplified localised unresectable/disseminated neuroblastoma (a SIOPEN collaborative study). Br J Cancer 105(12):1940–1948PubMedCrossRef Schleiermacher G et al (2011) Segmental chromosomal alterations lead to a higher risk of relapse in infants with MYCN-non-amplified localised unresectable/disseminated neuroblastoma (a SIOPEN collaborative study). Br J Cancer 105(12):1940–1948PubMedCrossRef
19.
go back to reference Stallings RL (2007) Origin and functional significance of large-scale chromosomal imbalances in neuroblastoma. Cytogenet Genome Res 118(2–4):110–115PubMedCrossRef Stallings RL (2007) Origin and functional significance of large-scale chromosomal imbalances in neuroblastoma. Cytogenet Genome Res 118(2–4):110–115PubMedCrossRef
20.
go back to reference Spengler BA, Biedler JL, Ross RA (2002) A corrected karyotype for the SH-SY5Y human neuroblastoma cell line. Cancer Genet Cytogenet 138(2):177–178PubMedCrossRef Spengler BA, Biedler JL, Ross RA (2002) A corrected karyotype for the SH-SY5Y human neuroblastoma cell line. Cancer Genet Cytogenet 138(2):177–178PubMedCrossRef
21.
go back to reference Van Roy N et al (2001) Combined M-FISH and CGH analysis allows comprehensive description of genetic alterations in neuroblastoma cell lines. Genes Chromosomes Cancer 32(2):126–135PubMedCrossRef Van Roy N et al (2001) Combined M-FISH and CGH analysis allows comprehensive description of genetic alterations in neuroblastoma cell lines. Genes Chromosomes Cancer 32(2):126–135PubMedCrossRef
22.
go back to reference Do JH et al (2007) Genome-wide examination of chromosomal aberrations in neuroblastoma SH-SY5Y cells by array-based comparative genomic hybridization. Mol Cells 24(1):105–112PubMed Do JH et al (2007) Genome-wide examination of chromosomal aberrations in neuroblastoma SH-SY5Y cells by array-based comparative genomic hybridization. Mol Cells 24(1):105–112PubMed
23.
go back to reference Kryh H et al (2011) Comprehensive SNP array study of frequently used neuroblastoma cell lines; copy neutral loss of heterozygosity is common in the cell lines but uncommon in primary tumors. BMC Genomics 12:443PubMedCrossRef Kryh H et al (2011) Comprehensive SNP array study of frequently used neuroblastoma cell lines; copy neutral loss of heterozygosity is common in the cell lines but uncommon in primary tumors. BMC Genomics 12:443PubMedCrossRef
24.
go back to reference Van Roy N et al (2000) Chromosome 2 short arm translocations revealed by M-FISH analysis of neuroblastoma cell lines. Med Pediatr Oncol 35(6):538–540PubMedCrossRef Van Roy N et al (2000) Chromosome 2 short arm translocations revealed by M-FISH analysis of neuroblastoma cell lines. Med Pediatr Oncol 35(6):538–540PubMedCrossRef
25.
go back to reference Thompson PM et al (2001) Loss of heterozygosity for chromosome 14q in neuroblastoma. Med Pediatr Oncol 36(1):28–31PubMedCrossRef Thompson PM et al (2001) Loss of heterozygosity for chromosome 14q in neuroblastoma. Med Pediatr Oncol 36(1):28–31PubMedCrossRef
26.
go back to reference Volchenboum SL et al (2009) Comparison of primary neuroblastoma tumors and derivative early-passage cell lines using genome-wide single nucleotide polymorphism array analysis. Cancer Res 69(10):4143–4149PubMedCrossRef Volchenboum SL et al (2009) Comparison of primary neuroblastoma tumors and derivative early-passage cell lines using genome-wide single nucleotide polymorphism array analysis. Cancer Res 69(10):4143–4149PubMedCrossRef
Metadata
Title
Comprehensive cytogenomic profile of the in vitro neuronal model SH-SY5Y
Authors
Mohammed Yusuf
Kay Leung
Keith J. Morris
Emanuela V. Volpi
Publication date
01-02-2013
Publisher
Springer-Verlag
Published in
Neurogenetics / Issue 1/2013
Print ISSN: 1364-6745
Electronic ISSN: 1364-6753
DOI
https://doi.org/10.1007/s10048-012-0350-9

Other articles of this Issue 1/2013

neurogenetics 1/2013 Go to the issue