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Published in: Oral and Maxillofacial Surgery 4/2020

01-12-2020 | Streptococci | Review Article

High-throughput nucleotide sequencing for bacteriome studies in oral squamous cell carcinoma: a systematic review

Authors: Ruth Tramontani Ramos, Camila Stofella Sodré, Paulo Matheus Guerra Ribeiro de Sousa Rodrigues, Alexandre Marques Paes da Silva, Milenna Silva Fuly, Henrique Fragoso dos Santos, Lucio Souza Gonçalves, Dennis de Carvalho Ferreira, Marcia Gonçalves Ribeiro

Published in: Oral and Maxillofacial Surgery | Issue 4/2020

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Abstract

Purpose

Dysbiosis has been identified in oral squamous cell carcinoma (OSCC). The aim of this study was to carry out a systematic review of an electronic research that was carried out on articles published between January 2008 and September 2018.

Methods

Eight studies were selected after applying the inclusion and exclusion criteria.

Results

All articles targeted the hypervariable regions of the 16S rRNA gene. At the phylum level, it was found reduction of Bacteroidetes (2/8 studies) and increase of Firmicutes (2/8 studies). At the genus level, Rothia increased (1/8 studies) and decreased (2/8 studies) in tumor samples, and Streptococcus also was found increased (3/8 studies) and reduced (3/8 studies). Fusobacterium only increased in OSCC samples (3/8 studies). At species level, an increase in F. nucleatum subsp. polymorphum was more associated to OSCC (2/8 studies) than with controls, as was P. aeruginosa (3/8 studies).

Conclusion

In summary, the results corroborated dysbiosis in OSCC patients, with enrichment of microbial taxa that are associated with inflammation and production of acetaldehyde. However, variations of study design and sample size were observed among the studies, as well as a shortage of more detailed analyses of possible correlations between risk habits and OSCC. This lack of more detailed analysis may be the cause of the inconsistencies in regard of the alterations reported for certain genera and species. In conclusion, there is an association between OSCC and oral microbiota dysbiosis, but its role in oral carcinogenesis needs to be clarified in more detail.
Literature
5.
go back to reference Instituto Nacional de Câncer José Alencar Gomes da Silva (2017) Estimativa 2018: incidência de câncer no Brasil. Rio de Janeiro: INCA:128 Instituto Nacional de Câncer José Alencar Gomes da Silva (2017) Estimativa 2018: incidência de câncer no Brasil. Rio de Janeiro: INCA:128
10.
go back to reference Bagordakis E, Sawazaki-Calone I, Macedo CCS, Carnielli CM, de Oliveira CE, Rodrigues PC, Rangel AL, Dos Santos JN, Risteli J, Graner E, Salo T, Paes Leme AF, Coletta RD (2016) Secretome profiling of oral squamous cell carcinoma-associated fibroblasts reveals organization and disassembly of extracellular matrix and collagen metabolic process signatures. Tumour Biol 37(7):9045–9057. https://doi.org/10.1007/s13277-015-4629-yCrossRefPubMed Bagordakis E, Sawazaki-Calone I, Macedo CCS, Carnielli CM, de Oliveira CE, Rodrigues PC, Rangel AL, Dos Santos JN, Risteli J, Graner E, Salo T, Paes Leme AF, Coletta RD (2016) Secretome profiling of oral squamous cell carcinoma-associated fibroblasts reveals organization and disassembly of extracellular matrix and collagen metabolic process signatures. Tumour Biol 37(7):9045–9057. https://​doi.​org/​10.​1007/​s13277-015-4629-yCrossRefPubMed
15.
go back to reference Handa Y, Fujita H, Watanabe Y, Honma S, Kaneuchi M, Minakami KR (2010) Does dietary estrogen intake from meat relate to the incidence of hormone-dependent cancers? J Clin Oncol 28(15):1553–1553CrossRef Handa Y, Fujita H, Watanabe Y, Honma S, Kaneuchi M, Minakami KR (2010) Does dietary estrogen intake from meat relate to the incidence of hormone-dependent cancers? J Clin Oncol 28(15):1553–1553CrossRef
18.
go back to reference Sasaki H, Ishzuka T, Muto M, Nezu M, Nakanishi Y, Inagaki Y, Watanabe H, Watanabe H, Terada M (1998) Presence of Streptococcus anginosus DNA in esophageal cancer, dysplasia of esophagus, and gastric cancer. Cancer Res 58(14):2991–2995PubMed Sasaki H, Ishzuka T, Muto M, Nezu M, Nakanishi Y, Inagaki Y, Watanabe H, Watanabe H, Terada M (1998) Presence of Streptococcus anginosus DNA in esophageal cancer, dysplasia of esophagus, and gastric cancer. Cancer Res 58(14):2991–2995PubMed
24.
go back to reference Mao S, Park Y, Hasegawa Y, Tribble GD, James CE, Handfield M, Stavropoulos MF, Yilmaz O, Lamont RJ (2007) Intrinsic apoptotic pathways of gingival epithelial cells modulated by Porphyromonas gingivalis. Cell Microbiol 9(8):1997–2007CrossRefPubMedPubMedCentral Mao S, Park Y, Hasegawa Y, Tribble GD, James CE, Handfield M, Stavropoulos MF, Yilmaz O, Lamont RJ (2007) Intrinsic apoptotic pathways of gingival epithelial cells modulated by Porphyromonas gingivalis. Cell Microbiol 9(8):1997–2007CrossRefPubMedPubMedCentral
25.
go back to reference Inaba H, Sugita H, Kuboniwa M, Iwai S, Hamada M, Noda T, Morisaki I, Lamont RJ, Amano A (2014) Porphyromonasgingivalis promotes invasion of oral squamous cell carcinoma through induction of proMMP9 and its activation. Cell Microbiol 16(1):131–145CrossRefPubMed Inaba H, Sugita H, Kuboniwa M, Iwai S, Hamada M, Noda T, Morisaki I, Lamont RJ, Amano A (2014) Porphyromonasgingivalis promotes invasion of oral squamous cell carcinoma through induction of proMMP9 and its activation. Cell Microbiol 16(1):131–145CrossRefPubMed
28.
go back to reference Di Bella JM, Bao Y, Gloor GB, Burton JP, Reid G (2013) High throughput sequencing methods and analysis for microbiome research. J Microbiol Methods 95(3):401–414CrossRefPubMed Di Bella JM, Bao Y, Gloor GB, Burton JP, Reid G (2013) High throughput sequencing methods and analysis for microbiome research. J Microbiol Methods 95(3):401–414CrossRefPubMed
29.
go back to reference Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Meg Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336CrossRefPubMedPubMedCentral Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Meg Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336CrossRefPubMedPubMedCentral
31.
go back to reference Umam LS (2011) Systematic reviews and meta-analyses. J Can Acad Child Adolesc Psychiatry 20(1):57–59 Umam LS (2011) Systematic reviews and meta-analyses. J Can Acad Child Adolesc Psychiatry 20(1):57–59
32.
go back to reference Lee WH, Chen HM, Yang SF, Liang C, Peng CY, Lin FM, Tsai LL, Wu BC, Hsin CH, Chuang CY, Yang T, Yang TL, Ho SY, Chen WL, Ueng KC, Huang HD, Huang CN, Jong YJ (2017) Bacterial alterations in salivary microbiota and their association in oral cancer. Sci Rep 7(1):16540CrossRefPubMedPubMedCentral Lee WH, Chen HM, Yang SF, Liang C, Peng CY, Lin FM, Tsai LL, Wu BC, Hsin CH, Chuang CY, Yang T, Yang TL, Ho SY, Chen WL, Ueng KC, Huang HD, Huang CN, Jong YJ (2017) Bacterial alterations in salivary microbiota and their association in oral cancer. Sci Rep 7(1):16540CrossRefPubMedPubMedCentral
33.
go back to reference Mukherjee PK, Wang H, Retuerto M, Zhang H, Burkey B, Ghannoum MA, Eng C (2017) Bacteriome and mycobiome associations in oral tongue cancer. Oncotarget 8(57):97273–97289CrossRefPubMedPubMedCentral Mukherjee PK, Wang H, Retuerto M, Zhang H, Burkey B, Ghannoum MA, Eng C (2017) Bacteriome and mycobiome associations in oral tongue cancer. Oncotarget 8(57):97273–97289CrossRefPubMedPubMedCentral
34.
35.
go back to reference Perera M, Al-hebshi NN, Perera I, Ipe D, Ulett GC, Speicher DJ, Chen T, Johnson N (2018) Inflammatory bacteriome and oral squamous cell carcinoma. J Dent Res 97(6):725–732CrossRefPubMed Perera M, Al-hebshi NN, Perera I, Ipe D, Ulett GC, Speicher DJ, Chen T, Johnson N (2018) Inflammatory bacteriome and oral squamous cell carcinoma. J Dent Res 97(6):725–732CrossRefPubMed
39.
go back to reference Guerrero-Preston R, Godoy-Vitorino F, Jedlicka A, Rodríguez-Hilario A, González H, Bondy J, Lawson F, Folawiyo O, Michailidi C, Dziedzic A, Thangavel R, Hadar T, Noordhuis MG, Westra W, Koch W, Sidransky D (2016) 16S rRNA Amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment. Oncotarget. 7(32):51320–51334. https://doi.org/10.18632/oncotarget.9710CrossRefPubMedPubMedCentral Guerrero-Preston R, Godoy-Vitorino F, Jedlicka A, Rodríguez-Hilario A, González H, Bondy J, Lawson F, Folawiyo O, Michailidi C, Dziedzic A, Thangavel R, Hadar T, Noordhuis MG, Westra W, Koch W, Sidransky D (2016) 16S rRNA Amplicon sequencing identifies microbiota associated with oral cancer, human papilloma virus infection and surgical treatment. Oncotarget. 7(32):51320–51334. https://​doi.​org/​10.​18632/​oncotarget.​9710CrossRefPubMedPubMedCentral
40.
go back to reference Yuhan Hao, Zhiheng Pei, Stuart M. Brown (2017) Chapter 1 - bioinformatics in microbiome analysis. Colin Harwood. Methods in microbiology. Academic Press. New York Yuhan Hao, Zhiheng Pei, Stuart M. Brown (2017) Chapter 1 - bioinformatics in microbiome analysis. Colin Harwood. Methods in microbiology. Academic Press. New York
44.
go back to reference Abdul-Hamid G, Saeed NM, Al-Kahiry W, Shukry S (2010) Pattern of head and neck cancer in Yemen. Gulf J Oncolog 7:21–24 Abdul-Hamid G, Saeed NM, Al-Kahiry W, Shukry S (2010) Pattern of head and neck cancer in Yemen. Gulf J Oncolog 7:21–24
48.
go back to reference Krisanaprakornkit S, Kimball JR, Weinberg A, Darveau RP, Bainbridge BW, Dale BA (2000) Inducible expression of human β-defensin 2 by Fusobacteriumnucleatum in oral epithelial cells: multiple signaling pathways and role of commensal cacteria in innate immunity and the epithelial barrier. Infect Immun 68(5):2907–2915CrossRefPubMedPubMedCentral Krisanaprakornkit S, Kimball JR, Weinberg A, Darveau RP, Bainbridge BW, Dale BA (2000) Inducible expression of human β-defensin 2 by Fusobacteriumnucleatum in oral epithelial cells: multiple signaling pathways and role of commensal cacteria in innate immunity and the epithelial barrier. Infect Immun 68(5):2907–2915CrossRefPubMedPubMedCentral
50.
go back to reference Nagy KN, Sonkodi Szöke I, Nagy E, Newman HN (1998) The microflora associated with human oral carcinomas. Oral Oncol 34(4):304–308CrossRefPubMed Nagy KN, Sonkodi Szöke I, Nagy E, Newman HN (1998) The microflora associated with human oral carcinomas. Oral Oncol 34(4):304–308CrossRefPubMed
51.
57.
go back to reference Hsiao JR, Chang CC, Lee WT, Huang CC, Ou CY, Tsai ST, Chen KC, Huang JS, Wong TY, Lai YH, Wu YH, Hsueh WT, Wu SY, Yen CJ, Chang JY, Lin CL, Weng YL, Yang HC, Chen YS, Chang JS The interplay between oral microbiome, lifestyle factors and genetic polymorphisms in the risk of oral squamous cell carcinoma. Carcinogenesis 39(6):778–787. https://doi.org/10.1093/carcin/bgy053 Hsiao JR, Chang CC, Lee WT, Huang CC, Ou CY, Tsai ST, Chen KC, Huang JS, Wong TY, Lai YH, Wu YH, Hsueh WT, Wu SY, Yen CJ, Chang JY, Lin CL, Weng YL, Yang HC, Chen YS, Chang JS The interplay between oral microbiome, lifestyle factors and genetic polymorphisms in the risk of oral squamous cell carcinoma. Carcinogenesis 39(6):778–787. https://​doi.​org/​10.​1093/​carcin/​bgy053
Metadata
Title
High-throughput nucleotide sequencing for bacteriome studies in oral squamous cell carcinoma: a systematic review
Authors
Ruth Tramontani Ramos
Camila Stofella Sodré
Paulo Matheus Guerra Ribeiro de Sousa Rodrigues
Alexandre Marques Paes da Silva
Milenna Silva Fuly
Henrique Fragoso dos Santos
Lucio Souza Gonçalves
Dennis de Carvalho Ferreira
Marcia Gonçalves Ribeiro
Publication date
01-12-2020
Publisher
Springer Berlin Heidelberg
Published in
Oral and Maxillofacial Surgery / Issue 4/2020
Print ISSN: 1865-1550
Electronic ISSN: 1865-1569
DOI
https://doi.org/10.1007/s10006-020-00873-4

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