Skip to main content
Top
Published in: Comparative Clinical Pathology 4/2008

01-10-2008 | Original Article

Genomic and phenotypic evaluation of Salmonella typhimurium and Salmonella enteritidis in Iran

Authors: O. Madadgar, T. Zahraei Salehi, H. Tadjbakhsh, M. Mahzounieh, M. M. Feizabadi

Published in: Comparative Clinical Pathology | Issue 4/2008

Login to get access

Abstract

Genomic and phenotypic evaluation of Salmonella typhimurium and Salmonella enteritidis by two simple, fast, and applicable methods of random amplified polymorphic DNA (RAPD) polymerase chain reaction (PCR) and antibiotic susceptibility for employment in epidemiologic surveillance screening systems in Iran was the objective in this study. We selected 60 (30 S. typhimurium and 30 S. enteritidis) isolates from different animal sources and different times and places among 1975–2006 in Iran. Serotyping with traditional method and reliable antisera was done and then confirmed with multiplex PCR (with four and three pair of primers, respectively). All of S. typhimurium and S. enteritidis isolates have virulence genes of invA and spv, respectively. Then, from nine primers, two primers that have enough discriminatory power were selected for RAPD analysis. We set up the quality and quantity of DNA template, primers, MgCl2, Taq DNA polymerase, and deoxyribonucleotide triphosphates concentration for RAPD analysis. We also examined the strains with disk diffusion standard antibiotic susceptibility test. With the application of primer P1254; we saw four and seven and primer 23L, six and three profiles in RAPD analysis and 13 and six profiles of R-type in susceptibility test of S. typhimurium and S. enteritidis, respectively. Combination of two methods differentiated these 30 strains to 20 and 16 different profiles, respectively. The finding of this study indicated that clonality of S. enteritidis is more than S. typhimurium in Iran and RAPD-PCR in combination with antibiotic susceptibility test were fast, easy, relatively reliable, and discriminatory molecular and phenotypic methods in the differentiation of S. typhimurium and S. enteritidis for epidemiologic purposes in Iran.
Literature
go back to reference Anonymous (2004) Annual report on zoonoses in Denmark 2003. Ministry of Food, Agriculture and Fisheries, Denmark Anonymous (2004) Annual report on zoonoses in Denmark 2003. Ministry of Food, Agriculture and Fisheries, Denmark
go back to reference Betancor L, Schelotto F, Martinez A et al (2003) Random amplified polymorphic DNA and phenotyping analysis of Salmonella entrica serovar enteritidis isolates collected from human and poultry in Uruguay from 1995 to 2002. J Clin Microbiol 42:1155–1162CrossRef Betancor L, Schelotto F, Martinez A et al (2003) Random amplified polymorphic DNA and phenotyping analysis of Salmonella entrica serovar enteritidis isolates collected from human and poultry in Uruguay from 1995 to 2002. J Clin Microbiol 42:1155–1162CrossRef
go back to reference Del Tufo JP, Tingey S (1994) RAPD assay. Methods Mol Biol 28:237–241PubMed Del Tufo JP, Tingey S (1994) RAPD assay. Methods Mol Biol 28:237–241PubMed
go back to reference Ellsworth DL, Rittenhouse KD, Honeycutt RL (1993) Artificial variation in randomly amplified polymorphic DNA banding patterns. BioTechniques 14:214–218PubMed Ellsworth DL, Rittenhouse KD, Honeycutt RL (1993) Artificial variation in randomly amplified polymorphic DNA banding patterns. BioTechniques 14:214–218PubMed
go back to reference Herikstad H, Motarjemi Y, Tauxe RV (2002) Salmonella surveillance: a global survey of public health serotyping. Epidemiol Infect 129:1–8PubMed Herikstad H, Motarjemi Y, Tauxe RV (2002) Salmonella surveillance: a global survey of public health serotyping. Epidemiol Infect 129:1–8PubMed
go back to reference Le Monor L, Rhode R (1974) In: Buchanan RE, Gibbons NE (eds), Bergey’s manual of determinative bacteriology (8th edn). Lippincott, Williams & Wilkins, Baltimore, p 299 Le Monor L, Rhode R (1974) In: Buchanan RE, Gibbons NE (eds), Bergey’s manual of determinative bacteriology (8th edn). Lippincott, Williams & Wilkins, Baltimore, p 299
go back to reference Lim YH, Hirose K, Izumiya H et al (2003) Multiplex polymerase chain reaction assay for selective detection of Salmonella entrica Serovar typhimurium. Jpn J Infect Dis 56:151–155PubMed Lim YH, Hirose K, Izumiya H et al (2003) Multiplex polymerase chain reaction assay for selective detection of Salmonella entrica Serovar typhimurium. Jpn J Infect Dis 56:151–155PubMed
go back to reference Lim H, Kyung HL, Chong-Hae H, Bahk GJ, Choi WS (2005) Comparison of four molecular typing methods for the differentiation of Salmonella spp. Int J Food Microbiol 105:411–418PubMedCrossRef Lim H, Kyung HL, Chong-Hae H, Bahk GJ, Choi WS (2005) Comparison of four molecular typing methods for the differentiation of Salmonella spp. Int J Food Microbiol 105:411–418PubMedCrossRef
go back to reference Lin AW, Usera MA, Barrett TJ et al (1996) Application of random amplified polymorphic DNA analysis to differentiate strains of Salmonella enteritidis. J Clin Microbiol 34:870–876PubMed Lin AW, Usera MA, Barrett TJ et al (1996) Application of random amplified polymorphic DNA analysis to differentiate strains of Salmonella enteritidis. J Clin Microbiol 34:870–876PubMed
go back to reference Maslow JN, Mulligan ME, Arbeit RD (1993) Molecular epidemiology: application of contemporary techniques to the typing of microorganisms. Clin Infect Dis 17:153–162PubMed Maslow JN, Mulligan ME, Arbeit RD (1993) Molecular epidemiology: application of contemporary techniques to the typing of microorganisms. Clin Infect Dis 17:153–162PubMed
go back to reference Meunier JR, Grimont PAD (1993) Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Res Microbiol 144:373–379PubMedCrossRef Meunier JR, Grimont PAD (1993) Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Res Microbiol 144:373–379PubMedCrossRef
go back to reference National Committee for Clinical Laboratory Standards (2000) Performance standards for antimicrobial disks susceptibility tests. Approved standard 7th edn, vol, 20 no 1. M2-A7 NCCLS, Wayne, PA National Committee for Clinical Laboratory Standards (2000) Performance standards for antimicrobial disks susceptibility tests. Approved standard 7th edn, vol, 20 no 1. M2-A7 NCCLS, Wayne, PA
go back to reference National Committee for Clinical Laboratory Standards (2001) Performance standards for antimicrobial susceptibility testing; 11th informational supplement, vol. 21, no 1. M100-S11 NCCLS, Wayne, PA National Committee for Clinical Laboratory Standards (2001) Performance standards for antimicrobial susceptibility testing; 11th informational supplement, vol. 21, no 1. M100-S11 NCCLS, Wayne, PA
go back to reference Pan TM, Lui YJ (2002) Identification of Salmonella enteritidis isolates by polymerase chain reaction and multiplex polymerase chain reaction. J Microbiol Immunol Infect 35:147–151PubMed Pan TM, Lui YJ (2002) Identification of Salmonella enteritidis isolates by polymerase chain reaction and multiplex polymerase chain reaction. J Microbiol Immunol Infect 35:147–151PubMed
go back to reference Persing DH, Tenover FC, Versalovic J et al (2004) Molecular microbiology, 1st edn. American Society for Microbiology, Washington, DC, p. 206 Persing DH, Tenover FC, Versalovic J et al (2004) Molecular microbiology, 1st edn. American Society for Microbiology, Washington, DC, p. 206
go back to reference Popoff M (2001) Antigenic formulas of the Salmonella serovars. WHO Collaborating Centre for Reference and Research on Salmonella, Institute Pasteur 28 rue du Dr.Roux, 75724 Paris Cedex 15 France Popoff M (2001) Antigenic formulas of the Salmonella serovars. WHO Collaborating Centre for Reference and Research on Salmonella, Institute Pasteur 28 rue du Dr.Roux, 75724 Paris Cedex 15 France
go back to reference Popoff MM, Bockemuhl J, Gheesling LL (2004) Supplement (2002) (no.46) to the Kauffman–White scheme. Res Microbiol 155:568–570PubMedCrossRef Popoff MM, Bockemuhl J, Gheesling LL (2004) Supplement (2002) (no.46) to the Kauffman–White scheme. Res Microbiol 155:568–570PubMedCrossRef
go back to reference Rahn K, De Grandis SA, Clarke RC et al (1992) Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella. Mol Cell Probes 6:271–279PubMedCrossRef Rahn K, De Grandis SA, Clarke RC et al (1992) Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella. Mol Cell Probes 6:271–279PubMedCrossRef
go back to reference Tekeli A, Erdem B, Salin F et al (2006) Plasmid profiles and randomly amplified polymorphic dna analysis of Salmonella entrica serotype enteritidis strains from outbreak and sporadic cases in Turkey. New Microbiologica 29:251–260PubMed Tekeli A, Erdem B, Salin F et al (2006) Plasmid profiles and randomly amplified polymorphic dna analysis of Salmonella entrica serotype enteritidis strains from outbreak and sporadic cases in Turkey. New Microbiologica 29:251–260PubMed
go back to reference Torpdahl M, Skov MN, Sandvang D et al (2005) Genotypic characterization of Salmonella by multilocus sequence typing pulsed field gel electrophoresis and amplification fragment length polymorphism. J Microbiol Methods 63:173–184PubMedCrossRef Torpdahl M, Skov MN, Sandvang D et al (2005) Genotypic characterization of Salmonella by multilocus sequence typing pulsed field gel electrophoresis and amplification fragment length polymorphism. J Microbiol Methods 63:173–184PubMedCrossRef
go back to reference Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213–7218PubMedCrossRef Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213–7218PubMedCrossRef
go back to reference Williams JGK, Kubelik AR, Livak KJ et al (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535PubMedCrossRef Williams JGK, Kubelik AR, Livak KJ et al (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18:6531–6535PubMedCrossRef
go back to reference Zahraei Salehi T, Tadjbakhsh H, Atashparvar N et al (2007) Detection and identification of Salmonella typhimurium in bovine diarrhoeic fecal samples by immunomagnetic separation and multiplex PCR assay. Zoonoses Public Health 54:231–236PubMedCrossRef Zahraei Salehi T, Tadjbakhsh H, Atashparvar N et al (2007) Detection and identification of Salmonella typhimurium in bovine diarrhoeic fecal samples by immunomagnetic separation and multiplex PCR assay. Zoonoses Public Health 54:231–236PubMedCrossRef
Metadata
Title
Genomic and phenotypic evaluation of Salmonella typhimurium and Salmonella enteritidis in Iran
Authors
O. Madadgar
T. Zahraei Salehi
H. Tadjbakhsh
M. Mahzounieh
M. M. Feizabadi
Publication date
01-10-2008
Publisher
Springer-Verlag
Published in
Comparative Clinical Pathology / Issue 4/2008
Print ISSN: 1618-5641
Electronic ISSN: 1618-565X
DOI
https://doi.org/10.1007/s00580-008-0745-z

Other articles of this Issue 4/2008

Comparative Clinical Pathology 4/2008 Go to the issue