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01-01-2019 | Population Data

17 Y-STR haplotype diversity in São Paulo state (southeast of Brazil)

Authors: Leandro Fonseca de Souza, Carlos Henrique Ares Silveira da Motta, Rodrigo Soares Moura-Neto

Published in: International Journal of Legal Medicine | Issue 1/2019

Abstract

A sample of 158 Brazilian males from São Paulo (SP), Brazilian southeast, was typed for 17 Y-STR loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, YGATA_H4.1, and DYS385ab). A total of 158 haplotypes were identified, of which all were unique. The haplotype diversity and discrimination capacity were calculated in 1.0 and the genetic diversity was 67.4%. Pairwise haplotype distances showed that the São Paulo population is not significantly different from Rio de Janeiro and Portugal, but is different from African and Native American.

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Nuñez C, Baeta M, Fernández M, Zarrabeitia M, Martinez-Jarreta B, de Pancorbo MM (2015) Highly discriminatory capacity of the PowerPlex® Y23 System for the study of isolated populations. Forensic Sci Int Genet 17:104–107. https://doi.org/10.1016/j.fsigen.2015.04.005 CrossRefPubMed

Santos FR, Gerelsaikhan T, Munkhtuja B, Oyunsuren T, Epplen JT, Pena SDJ (1996) Geographic differences in the allele frequencies of the human Y-linked tetranucleotide polymorphism DYS19. Hum Genet 97:309–313CrossRefPubMed

Grattapaglia D, Kalupniek S, Guimarães CS, Ribeiro MA, Diener PS, Soares CN (2005) Y-chromosome STR haplotype diversity in Brazilian populations. Forensic Sci Int 149:99–107. https://doi.org/10.1016/j.forsciint.2004.06.003 CrossRefPubMed

Góis CC, Martins JA, Pereira GA, Freschi A, Paneto GG, Alvarenga VLS, Cicarelli RMB, Hirata MH, Oliveira RN (2008) Genetic population data of 12 STR loci of the PowerPlex®Y system in the state of São Paulo population (southeast of Brazil). Forensic Sci Int 174:81–86. https://doi.org/10.1016/j.forsciint.2006.12.018 CrossRefPubMed

Cardena MMSG, Mansur AJ, Pereira AC, Fridman C (2016) Y haplotype variability in a population of SÃO Paulo state, Brazil. Forensic Sci Int Genet 23:e22–e23. https://doi.org/10.1016/j.fsigen.2016.05.003 CrossRefPubMed

Nei M, Tajima F (1981) Genetic drift and estimation of effective population size. Genetics 98:625–640

IBGE (2010) Demograhphic sense of 2010. Brazilian Institute of Geography and Statistics. ftp://ftp.ibge.gov.br/Censos/Censo_Demografico_2010/Resultados_do_Universo/Resultados_preliminares_sobre_Rendimentos/Unidades_da_Federacao/sao_paulo.zip. Accessed 16 Feb 2017

Carvalho-Silva DR, Santos FR, Rocha J, Pena SD (2001) The phylogeography of Brazilian Y-chromosome lineages. Am J Hum Genet 68:281–286. https://doi.org/10.1086/316931 CrossRefPubMed

FUNAI. Indigenous people in Brazilian territory. National Indigenous Fundation. http://www.funai.gov.br/index.php/indios-no-brasil/terras-indigenas. Accessed 16 Feb 2017

10.

Parson W, Roewer L (2010) Publication of population data of linearly inherited DNA markers in the International Journal of Legal Medicine. Int J Legal Med 124:505–509. https://doi.org/10.1007/s00414-010-0492-y CrossRefPubMed

11.

Poetsch M, Bajanowski T, Pfeiffer H (2012) The publication of population genetic data in the International Journal of Legal Medicine: guidelines. Int J Legal Med 126:489–490. https://doi.org/10.1007/s00414-012-0700-z CrossRef

Title: 17 Y-STR haplotype diversity in São Paulo state (southeast of Brazil)
Authors: Leandro Fonseca de Souza
Carlos Henrique Ares Silveira da Motta
Rodrigo Soares Moura-Neto
Publication date: 01-01-2019
Publisher: Springer Berlin Heidelberg
Published in: International Journal of Legal Medicine / Issue 1/2019
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI: https://doi.org/10.1007/s00414-018-1823-7

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17 Y-STR haplotype diversity in São Paulo state (southeast of Brazil)

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