Skip to main content
Top
Published in: International Journal of Legal Medicine 5/2009

01-09-2009 | Original Article

Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach

Authors: Gianmarco Ferri, Milena Alù, Beatrice Corradini, Giovanni Beduschi

Published in: International Journal of Legal Medicine | Issue 5/2009

Login to get access

Abstact

Forensic botany can provide significant supporting evidence during criminal investigations. However, it is still an underutilized field of investigation with its most common application limited to identifying specific as well as suspected illegal plants. The ubiquitous presence of plant species can be useful in forensics, but the absence of an accurate identification system remains the major obstacle to the present inability to routinely and correctly identify trace botanical evidence. Many plant materials cannot be identified and differentiated to the species level by traditional morphological characteristics when botanical specimens are degraded and lack physical features. By taking advantage of a universal barcode system, DNA sequencing, and other biomolecular techniques used routinely in forensic investigations, two chloroplast DNA regions were evaluated for their use as “barcoding” markers for plant identification in the field of forensics. We therefore investigated the forensic use of two non-coding plastid regions, psbA-trnH and trnL-trnF, to create a multimarker system for species identification that could be useful throughout the plant kingdom. The sequences from 63 plants belonging to our local flora were submitted and registered on the GenBank database. Sequence comparison to set up the level of identification (species, genus, or family) through Blast algorithms allowed us to assess the suitability of this method. The results confirmed the effectiveness of our botanic universal multimarker assay in forensic investigations.
Appendix
Available only for authorised users
Literature
1.
go back to reference Coyle HM, Ladd C, Palmbach T, Lee HC (2001) The green revolution: botanical contributions to forensic and drug enforcement. Croat Med J 42(3):340–345 Coyle HM, Ladd C, Palmbach T, Lee HC (2001) The green revolution: botanical contributions to forensic and drug enforcement. Croat Med J 42(3):340–345
2.
go back to reference Coyle HM, Lee CL, Lee HC, Lin WY, Palmbach TM (2005) Forensic botany: using plant evidence to aid in forensic death investigation. Croat Med J 46(4):606–612 Coyle HM, Lee CL, Lee HC, Lin WY, Palmbach TM (2005) Forensic botany: using plant evidence to aid in forensic death investigation. Croat Med J 46(4):606–612
3.
go back to reference Quatrehomme G, Lacoste A, Bailet P, Grevin G, Ollier A (1997) Contribution of microscopic plant anatomy to postmortem bone dating. J Forensic Sci 42(1):140–143PubMed Quatrehomme G, Lacoste A, Bailet P, Grevin G, Ollier A (1997) Contribution of microscopic plant anatomy to postmortem bone dating. J Forensic Sci 42(1):140–143PubMed
4.
go back to reference Mildenhall DC (2006) An unusual appearance of a common pollen type indicates the scene of the crime. Forensic Sci Int 163:236–240PubMedCrossRef Mildenhall DC (2006) An unusual appearance of a common pollen type indicates the scene of the crime. Forensic Sci Int 163:236–240PubMedCrossRef
5.
go back to reference Mildenhall DC (2006) Hypericum pollen determines the presence of burglars at the scene of a crime: an example of forensic palynology. Forensic Sci Int 163:231–235PubMedCrossRef Mildenhall DC (2006) Hypericum pollen determines the presence of burglars at the scene of a crime: an example of forensic palynology. Forensic Sci Int 163:231–235PubMedCrossRef
6.
go back to reference Bock JH, Norris DO (1997) Forensic botany: an under-utilized resource. J Forensic Sci 42(3):364–367 Bock JH, Norris DO (1997) Forensic botany: an under-utilized resource. J Forensic Sci 42(3):364–367
8.
go back to reference Dunbar M, Murphy TM (2009) DNA analysis of natural fiber rope. J Forensic Sci 54:1–6CrossRef Dunbar M, Murphy TM (2009) DNA analysis of natural fiber rope. J Forensic Sci 54:1–6CrossRef
9.
go back to reference Lee CL, Coyle HM, Lee HC (2007) Genetic analysis of individual seeds by amplified fragment length polymorphism method. Croat Med J 48:563–565PubMed Lee CL, Coyle HM, Lee HC (2007) Genetic analysis of individual seeds by amplified fragment length polymorphism method. Croat Med J 48:563–565PubMed
10.
go back to reference Congiu L, Chicca M, Cella R, Rossi R, Bernacchia G (2000) The use of random amplified polymorphic DNA (RAPD) marker to identify strawberry varieties: a forensic application. Mol Ecol 9:229–232PubMedCrossRef Congiu L, Chicca M, Cella R, Rossi R, Bernacchia G (2000) The use of random amplified polymorphic DNA (RAPD) marker to identify strawberry varieties: a forensic application. Mol Ecol 9:229–232PubMedCrossRef
11.
go back to reference Bless C, Palmeter H, Wallace M (2006) Identification of Acer rubrum using amplified fragment length polymorphism. J Forensic Sci 51(1):31–38PubMedCrossRef Bless C, Palmeter H, Wallace M (2006) Identification of Acer rubrum using amplified fragment length polymorphism. J Forensic Sci 51(1):31–38PubMedCrossRef
12.
go back to reference Coyle MH (2003) An overview of DNA methods for the identification and individualization of marijuana. Croat Med J 44:315–321 Coyle MH (2003) An overview of DNA methods for the identification and individualization of marijuana. Croat Med J 44:315–321
13.
go back to reference Stambuk S, Sutlovic D, Bakaric P, Petricevic S, Andelinovic S (2007) Forensic botany: potential usefulness of microsatellite-based genotyping of Croatian Olive (Olea europaea L.) in forensic casework. Croat Med J 48:556–562PubMed Stambuk S, Sutlovic D, Bakaric P, Petricevic S, Andelinovic S (2007) Forensic botany: potential usefulness of microsatellite-based genotyping of Croatian Olive (Olea europaea L.) in forensic casework. Croat Med J 48:556–562PubMed
14.
go back to reference Craft KJ, Owens JD, Ashley MV (2007) Application of plant DNA markers in forensic botany: genetic comparison of Quercus evidence leaves to crime scene trees using microsatellites. Forensic Sci Int 165:64–70PubMedCrossRef Craft KJ, Owens JD, Ashley MV (2007) Application of plant DNA markers in forensic botany: genetic comparison of Quercus evidence leaves to crime scene trees using microsatellites. Forensic Sci Int 165:64–70PubMedCrossRef
15.
go back to reference Korpelainen H, Virtanen V (2003) DNA fingerprinting of mosses. J Forensic Sci 48:804–807PubMed Korpelainen H, Virtanen V (2003) DNA fingerprinting of mosses. J Forensic Sci 48:804–807PubMed
16.
go back to reference Ward J, Peakall R, Gilmore SR, Robertson J (2005) A molecular identification system for grasses: a novel technology for forensic botany. Forensic Sci Int 152:121–131PubMedCrossRef Ward J, Peakall R, Gilmore SR, Robertson J (2005) A molecular identification system for grasses: a novel technology for forensic botany. Forensic Sci Int 152:121–131PubMedCrossRef
17.
go back to reference Tsai LC, Yu YC, Hsieh HM, Wang JC, Linacre A, Lee JCI (2006) Species identification using sequences of the trnL intron and the trnL-trnF IGS of chloroplast genome among popular plants in Taiwan. Forensic Sci Int 164:193–200PubMedCrossRef Tsai LC, Yu YC, Hsieh HM, Wang JC, Linacre A, Lee JCI (2006) Species identification using sequences of the trnL intron and the trnL-trnF IGS of chloroplast genome among popular plants in Taiwan. Forensic Sci Int 164:193–200PubMedCrossRef
18.
go back to reference Tsai LC, Yu YC, Hsieh HM, Liu KL, Linacre A, Lee JCI (2008) Bidens identification using the non coding regions of chloroplast genome and nuclear ribosomal DNA. Forensic Sci Int Genet 2:35–40PubMedCrossRef Tsai LC, Yu YC, Hsieh HM, Liu KL, Linacre A, Lee JCI (2008) Bidens identification using the non coding regions of chloroplast genome and nuclear ribosomal DNA. Forensic Sci Int Genet 2:35–40PubMedCrossRef
19.
go back to reference Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA barcodes. Proc R Soc Lond B 270:313–321CrossRef Hebert PDN, Cywinska A, Ball SL, de Waard JR (2003) Biological identifications through DNA barcodes. Proc R Soc Lond B 270:313–321CrossRef
20.
go back to reference Savolainen V, Cowan RS, Vogler AP, Roderick GK, Lane R (2005) Towards writing the encyclopaedia of life: an introduction to DNA barcoding. Phil Trans R Soc Lond B 360:1805–1811CrossRef Savolainen V, Cowan RS, Vogler AP, Roderick GK, Lane R (2005) Towards writing the encyclopaedia of life: an introduction to DNA barcoding. Phil Trans R Soc Lond B 360:1805–1811CrossRef
21.
go back to reference Dawnay N, Ogden R, McEwing R, Carvalho GR, Thorpe RS (2007) Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci Int 173:1–6PubMedCrossRef Dawnay N, Ogden R, McEwing R, Carvalho GR, Thorpe RS (2007) Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci Int 173:1–6PubMedCrossRef
22.
go back to reference Hebert PDN, de Waard JR, Ratnasingham S (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B 270:S96–S99CrossRef Hebert PDN, de Waard JR, Ratnasingham S (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B 270:S96–S99CrossRef
23.
go back to reference Ferri G, Alù M, Corradini B, Licata M, Beduschi G (2009) Species identification through DNA “barcodes”. Genet Test Mol Biomarkers 13(3):421–426PubMedCrossRef Ferri G, Alù M, Corradini B, Licata M, Beduschi G (2009) Species identification through DNA “barcodes”. Genet Test Mol Biomarkers 13(3):421–426PubMedCrossRef
24.
go back to reference Kress JW, Wurdack Kenneth J, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 102(23):8369–8374PubMedCrossRef Kress JW, Wurdack Kenneth J, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. Proc Natl Acad Sci USA 102(23):8369–8374PubMedCrossRef
25.
go back to reference Chase MW, Salamin N, Wilkinson M, Dunwell JM, Prasad Kesanakurthi R, Haidar N, Savolainen V (2005) Land plants and DNA barcodes: short-term and long-term goals. Phil Trans R Soc Lond B 360:1889–1895CrossRef Chase MW, Salamin N, Wilkinson M, Dunwell JM, Prasad Kesanakurthi R, Haidar N, Savolainen V (2005) Land plants and DNA barcodes: short-term and long-term goals. Phil Trans R Soc Lond B 360:1889–1895CrossRef
26.
go back to reference Cowan RS, Chase MW, Kress JW, Savolainen V (2006) 300 000 species to identify: problems, progress and prospects in DNA barcoding of land plants. Taxon 55:611–616CrossRef Cowan RS, Chase MW, Kress JW, Savolainen V (2006) 300 000 species to identify: problems, progress and prospects in DNA barcoding of land plants. Taxon 55:611–616CrossRef
28.
go back to reference Chase MW, Cowan RS, Hollingsworth PM et al (2007) A proposal for a standardised protocol to barcode all land plants. Taxon 56:295–299 Chase MW, Cowan RS, Hollingsworth PM et al (2007) A proposal for a standardised protocol to barcode all land plants. Taxon 56:295–299
33.
go back to reference Newmaster SG, Fazekas J, Steeves AD, Janovec J (2008) Testing candidate plant barcode regions in the Myristicaceae. Mol Ecol Notes 8:480–490 Newmaster SG, Fazekas J, Steeves AD, Janovec J (2008) Testing candidate plant barcode regions in the Myristicaceae. Mol Ecol Notes 8:480–490
34.
go back to reference Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105–1109PubMedCrossRef Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105–1109PubMedCrossRef
35.
go back to reference Stech M, Quandt D, Frey W (2003) Molecular circumscription of the hornworts (Anthocerotophyta) based on the chloroplast DNA trnL-trnF region. J Plants Res 116:389–398CrossRef Stech M, Quandt D, Frey W (2003) Molecular circumscription of the hornworts (Anthocerotophyta) based on the chloroplast DNA trnL-trnF region. J Plants Res 116:389–398CrossRef
36.
go back to reference Taberlet P, Coissac E, Pompanon F et al (2007) Power and limitations of the chloroplast trnL (UAA) intron for plant barcoding. Nucleic Acids Res 35:1–8CrossRef Taberlet P, Coissac E, Pompanon F et al (2007) Power and limitations of the chloroplast trnL (UAA) intron for plant barcoding. Nucleic Acids Res 35:1–8CrossRef
37.
go back to reference Chenna R, Sugawara H, Koike T, Lopez R, Gibson T, Higgins DJ, Thompson JD (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31:3497–3500PubMedCrossRef Chenna R, Sugawara H, Koike T, Lopez R, Gibson T, Higgins DJ, Thompson JD (2003) Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31:3497–3500PubMedCrossRef
38.
go back to reference Excoffier L, Laval G, Schneider S (2005) Arlequin ver 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatics Online 1:47–50 Excoffier L, Laval G, Schneider S (2005) Arlequin ver 3.0: an integrated software package for population genetics data analysis. Evol Bioinformatics Online 1:47–50
39.
go back to reference Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL (2008) GenBank. Nucleic Acids Res 36:25–30CrossRef Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL (2008) GenBank. Nucleic Acids Res 36:25–30CrossRef
40.
go back to reference Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410PubMed Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410PubMed
41.
go back to reference McGinnis S, Madden T (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32:20–25CrossRef McGinnis S, Madden T (2004) BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res 32:20–25CrossRef
42.
go back to reference Bever R, Cimino M (2001) Forensic molecular botany: identification of plants from trace evidence. Proceedings of the Promega 12th International Symposium on Human Identification, Oct 9–12, Biloxi, MS, USA Bever R, Cimino M (2001) Forensic molecular botany: identification of plants from trace evidence. Proceedings of the Promega 12th International Symposium on Human Identification, Oct 9–12, Biloxi, MS, USA
43.
go back to reference Gemeinholzer B, Oberprieler C, Bachmann K (2006) Using GenBank data for plant identification: possibilities and limitations using the ITS 1 of Asteraceae species belonging to the tribes Lactuceae and Anthemideae. Taxon 55:173–187 Gemeinholzer B, Oberprieler C, Bachmann K (2006) Using GenBank data for plant identification: possibilities and limitations using the ITS 1 of Asteraceae species belonging to the tribes Lactuceae and Anthemideae. Taxon 55:173–187
44.
go back to reference Little DP, Stevenson DWM (2007) A comparison of algorithms for the identification of specimens using DNA barcodes:examples from gymnosperms. Cladistics 23:1–21CrossRef Little DP, Stevenson DWM (2007) A comparison of algorithms for the identification of specimens using DNA barcodes:examples from gymnosperms. Cladistics 23:1–21CrossRef
45.
go back to reference Parson W, Pegoraro K, Niederstätter H, Föger M (2000) Species identification by means of the cytochrome b gene. Int J Legal Med 114:23–28PubMedCrossRef Parson W, Pegoraro K, Niederstätter H, Föger M (2000) Species identification by means of the cytochrome b gene. Int J Legal Med 114:23–28PubMedCrossRef
46.
go back to reference Imaizumi K, Akutsu T, Myasaka S, Yoshino M (2007) Development of species identification tests targeting the 16S ribosomal RNA coding region in mitochondrial DNA. Int J of Legal Med 121:184–191CrossRef Imaizumi K, Akutsu T, Myasaka S, Yoshino M (2007) Development of species identification tests targeting the 16S ribosomal RNA coding region in mitochondrial DNA. Int J of Legal Med 121:184–191CrossRef
47.
go back to reference Crane PR (2004) Documenting plant diversity: unfinished business. Phil Trans R Soc Lond B 359:735–737CrossRef Crane PR (2004) Documenting plant diversity: unfinished business. Phil Trans R Soc Lond B 359:735–737CrossRef
Metadata
Title
Forensic botany: species identification of botanical trace evidence using a multigene barcoding approach
Authors
Gianmarco Ferri
Milena Alù
Beatrice Corradini
Giovanni Beduschi
Publication date
01-09-2009
Publisher
Springer-Verlag
Published in
International Journal of Legal Medicine / Issue 5/2009
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-009-0356-5

Other articles of this Issue 5/2009

International Journal of Legal Medicine 5/2009 Go to the issue

Editorial

Editorial