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Published in: International Journal of Legal Medicine 1/2006

01-01-2006 | Short Communication

Y-chromosomal STR haplotypes in a Northeast Italian population sample using 17plex loci PCR assay

Authors: Stefania Turrina, Renzo Atzei, Domenico De Leo

Published in: International Journal of Legal Medicine | Issue 1/2006

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Abstract

One hundred fifty-five unrelated, autochthonous healthy males from Northeast Italy were typed for the 17 Y-chromosome short tandem repeat (STR) (Y-STR) loci DYS456, DYS389I, DYS390, DYS389II, DYS458, DYS19, DYS385, DYS393, DYS391, DYS439, DYS635, DYS392, Y GATA H4, DYS437, DYS438, DYS448 using the AmpFLSTR Yfiler polymerase chain reaction amplification kit. A total of 153 different haplotypes were observed, and among these, 151 were unique, while 2 were found two times. The overall haplotype diversity was 0.9997. Furthermore, 50 father–son pairs, previously confirmed by autosomal STR analysis, were typed using the same set of 17 Y-STR loci, and, among 850 allele transfers, three mutation events were identified, giving an average mutation rate of 3.53×10−3 per locus per generation (95% confidence interval 0.73–1.03).
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Literature
1.
go back to reference Berger B, Lindinger A, Niederstätter H, Grubwieser P, Parson W (2005) Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay. Int J Legal Med. DOI 10.1007/s0041400505468 Berger B, Lindinger A, Niederstätter H, Grubwieser P, Parson W (2005) Y-STR typing of an Austrian population sample using a 17-loci multiplex PCR assay. Int J Legal Med. DOI 10.1007/s0041400505468
2.
go back to reference Bosch E, Lee AC, Calafell F, Arroyo E, Henneman P, De Knijff P, Jobling MA (2002) High resolution Y chromosome typing: 19 STRs amplified in three multiplex reactions. Forensic Sci Int 125:42–51CrossRefPubMed Bosch E, Lee AC, Calafell F, Arroyo E, Henneman P, De Knijff P, Jobling MA (2002) High resolution Y chromosome typing: 19 STRs amplified in three multiplex reactions. Forensic Sci Int 125:42–51CrossRefPubMed
3.
go back to reference Dupuy BM, Andreassen R, Flones AG et al (2001) Y chromosome variation in a Norwegian population sample. Forensic Sci Int 117:163–173CrossRefPubMed Dupuy BM, Andreassen R, Flones AG et al (2001) Y chromosome variation in a Norwegian population sample. Forensic Sci Int 117:163–173CrossRefPubMed
4.
go back to reference Gusmão L, Butler ML, Carracedo A et al (2005) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Int J Legal Med. DOI 10.1007/s0041400500261 Gusmão L, Butler ML, Carracedo A et al (2005) DNA Commission of the International Society of Forensic Genetics (ISFG): an update of the recommendations on the use of Y-STRs in forensic analysis. Int J Legal Med. DOI 10.1007/s0041400500261
5.
go back to reference Hall A, Ballantyne J (2003) Novel Y-STR typing strategies reveal the genetic profile of the semen donor in extended interval post-coital cervicovaginal samples. Forensic Sci Int 136:58–72CrossRefPubMed Hall A, Ballantyne J (2003) Novel Y-STR typing strategies reveal the genetic profile of the semen donor in extended interval post-coital cervicovaginal samples. Forensic Sci Int 136:58–72CrossRefPubMed
6.
go back to reference Kayser M, Caglià A, Corache D et al (1997) Evaluation of Y-chromosomal STRs: a multicenter study. Int J Legal Med 110:125–133CrossRefPubMed Kayser M, Caglià A, Corache D et al (1997) Evaluation of Y-chromosomal STRs: a multicenter study. Int J Legal Med 110:125–133CrossRefPubMed
7.
go back to reference Kayser M, Roewer L, Hedman M et al (2000) Characteristics and frequency of germline mutations at microsatellite loci from human Y chromosome, as revealed by direct observation in father/son pairs. Am J Hum Genet 66:1580–1588CrossRefPubMed Kayser M, Roewer L, Hedman M et al (2000) Characteristics and frequency of germline mutations at microsatellite loci from human Y chromosome, as revealed by direct observation in father/son pairs. Am J Hum Genet 66:1580–1588CrossRefPubMed
8.
go back to reference Kurihara R, Yamamoto T, Uchihi R et al (2004) Mutations in 14 Y-STR loci among Japanese father–son haplotypes. Int J Legal Med 118:125–131CrossRefPubMed Kurihara R, Yamamoto T, Uchihi R et al (2004) Mutations in 14 Y-STR loci among Japanese father–son haplotypes. Int J Legal Med 118:125–131CrossRefPubMed
9.
go back to reference Parson W, Niederstätter H, Kochl S, Steinlechner M, Berger B (2001) When autosomal tandem repeats fail: optimized primer and reaction design for Y-chromosome short tandem repeat analysis in forensic casework. Croat Med J 42:285–287PubMed Parson W, Niederstätter H, Kochl S, Steinlechner M, Berger B (2001) When autosomal tandem repeats fail: optimized primer and reaction design for Y-chromosome short tandem repeat analysis in forensic casework. Croat Med J 42:285–287PubMed
10.
go back to reference Redd AJ, Agellon AB, Kearney VA, Contreras VA et al (2002) Forensic value of 14 novel STRs on the human Y chromosome. Forensic Sci Int 130:97–111CrossRefPubMed Redd AJ, Agellon AB, Kearney VA, Contreras VA et al (2002) Forensic value of 14 novel STRs on the human Y chromosome. Forensic Sci Int 130:97–111CrossRefPubMed
11.
go back to reference Schoske R, Vallone PM, Kline MC, Redman JW, Butler JM (2004) High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays. Forensic Sci Int 139:107–121CrossRefPubMed Schoske R, Vallone PM, Kline MC, Redman JW, Butler JM (2004) High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays. Forensic Sci Int 139:107–121CrossRefPubMed
12.
go back to reference Sibille I, Duverneuil C, De La Grandmaison GL, Guerrouache K, Teissière F, Durigon M, De Mazancourt P (2002) Y-STR DNA amplification as biological evidence in sexually assaulted female victims with no cytological detection of spermatozoa. Forensic Sci Int 125:212–216CrossRefPubMed Sibille I, Duverneuil C, De La Grandmaison GL, Guerrouache K, Teissière F, Durigon M, De Mazancourt P (2002) Y-STR DNA amplification as biological evidence in sexually assaulted female victims with no cytological detection of spermatozoa. Forensic Sci Int 125:212–216CrossRefPubMed
13.
go back to reference Tang JP, Hou YP, Li YB, Wu J, Zhang J, Zhang HJ (2003) Characterization of eight Y-STR loci and haplotypes in a Chinese Han population. Int J Legal Med 117:263–270CrossRefPubMed Tang JP, Hou YP, Li YB, Wu J, Zhang J, Zhang HJ (2003) Characterization of eight Y-STR loci and haplotypes in a Chinese Han population. Int J Legal Med 117:263–270CrossRefPubMed
14.
go back to reference Uchihi R, Yamamoto T, Usuda K et al (2003) Haplotype analysis with 14 Y-STR loci using 2 multiplex amplification and typing systems in 2 regional populations in Japan. Int J Legal Med 117:34-38PubMed Uchihi R, Yamamoto T, Usuda K et al (2003) Haplotype analysis with 14 Y-STR loci using 2 multiplex amplification and typing systems in 2 regional populations in Japan. Int J Legal Med 117:34-38PubMed
Metadata
Title
Y-chromosomal STR haplotypes in a Northeast Italian population sample using 17plex loci PCR assay
Authors
Stefania Turrina
Renzo Atzei
Domenico De Leo
Publication date
01-01-2006
Publisher
Springer-Verlag
Published in
International Journal of Legal Medicine / Issue 1/2006
Print ISSN: 0937-9827
Electronic ISSN: 1437-1596
DOI
https://doi.org/10.1007/s00414-005-0054-x

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