Skip to main content
Top
Published in: Acta Neuropathologica 3/2013

01-09-2013 | Original Paper

ATRX loss refines the classification of anaplastic gliomas and identifies a subgroup of IDH mutant astrocytic tumors with better prognosis

Authors: Benedikt Wiestler, David Capper, Tim Holland-Letz, Andrey Korshunov, Andreas von Deimling, Stefan Michael Pfister, Michael Platten, Michael Weller, Wolfgang Wick

Published in: Acta Neuropathologica | Issue 3/2013

Login to get access

Abstract

Mutation/loss of alpha-thalassemia/mental retardation syndrome X-linked (ATRX) expression has been described in anaplastic gliomas. The present study explored the role of ATRX status in the molecular classification of anaplastic gliomas and its impact on survival in the biomarker cohort of the NOA-04 anaplastic glioma trial. Patients (n = 133) of the NOA-04 trial were analyzed for ATRX expression using immunohistochemistry. ATRX status was correlated with age, histology, isocitrate dehydrogenase (IDH), 1p/19q, alternative lengthening of telomeres (ALT) and O6-methylguanine-DNA methyltransferase (MGMT) status, and the trial efficacy endpoints. Loss of ATRX expression was detected in 45 % of anaplastic astrocytomas (AA), 27 % of anaplastic oligoastrocytomas (AOA) and 10 % of anaplastic oligodendrogliomas (AO). It was mostly restricted to IDH mutant tumors and almost mutually exclusive with 1p/19q co-deletion. The ALT phenotype was significantly correlated with ATRX loss. ATRX and 1p/19q status were used to re-classify AOA: AOA harboring ATRX loss shared a similar clinical course with AA, whereas AOA carrying 1p/19q co-deletion shared a similar course with AO. Accordingly, in a Cox regression model including ATRX and 1p/19q status, histology was no longer significantly associated with time to treatment failure. Survival analysis showed a marked separation of IDH mutant astrocytic tumors into two groups based on ATRX status: tumors with ATRX loss had a significantly better prognosis (median time to treatment failure 55.6 vs. 31.8 months, p = 0.0168, log rank test). ATRX status helps better define the clinically and morphologically mixed group of AOA, since ATRX loss is a hallmark of astrocytic tumors. Furthermore, ATRX loss defines a subgroup of astrocytic tumors with a favorable prognosis.
Appendix
Available only for authorised users
Literature
1.
go back to reference Bassett AR, Cooper SE, Ragab A, Travers AA (2008) The chromatin remodelling factor dATRX is involved in heterochromatin formation. PLoS One 3:e2099PubMedCrossRef Bassett AR, Cooper SE, Ragab A, Travers AA (2008) The chromatin remodelling factor dATRX is involved in heterochromatin formation. PLoS One 3:e2099PubMedCrossRef
2.
go back to reference Van den Bent MJ, Brandes AA, Taphoorn MJB, Kros JM, Kouwenhoven MCM, et al. (2012) Adjuvant procarbazine, lomustine, and vincristine chemotherapy in newly diagnosed anaplastic oligodendroglioma: long-term follow-up of EORTC brain tumor group study 26951. J Clin Oncol Van den Bent MJ, Brandes AA, Taphoorn MJB, Kros JM, Kouwenhoven MCM, et al. (2012) Adjuvant procarbazine, lomustine, and vincristine chemotherapy in newly diagnosed anaplastic oligodendroglioma: long-term follow-up of EORTC brain tumor group study 26951. J Clin Oncol
3.
go back to reference Van den Bent MJ, Carpentier AF, Brandes AA, Sanson M, Taphoorn MJB et al (2006) Adjuvant procarbazine, lomustine, and vincristine improves progression-free survival but not overall survival in newly diagnosed anaplastic oligodendrogliomas and oligoastrocytomas: a randomized European Organisation for Research and Treatment of Cancer p. J Clin Oncol: Off J Am Soc Clin Oncol 24:2715–2722CrossRef Van den Bent MJ, Carpentier AF, Brandes AA, Sanson M, Taphoorn MJB et al (2006) Adjuvant procarbazine, lomustine, and vincristine improves progression-free survival but not overall survival in newly diagnosed anaplastic oligodendrogliomas and oligoastrocytomas: a randomized European Organisation for Research and Treatment of Cancer p. J Clin Oncol: Off J Am Soc Clin Oncol 24:2715–2722CrossRef
4.
go back to reference Cairncross G, Wang M, Shaw E, Jenkins R, Brachman D, et al. (2012) Phase III Trial of chemo radiotherapy for anaplastic oligodendroglioma: long-term results of RTOG 9402. J Clin Oncol Cairncross G, Wang M, Shaw E, Jenkins R, Brachman D, et al. (2012) Phase III Trial of chemo radiotherapy for anaplastic oligodendroglioma: long-term results of RTOG 9402. J Clin Oncol
5.
go back to reference Cancer Genome Atlas Research Network (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455:1061–1068CrossRef Cancer Genome Atlas Research Network (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455:1061–1068CrossRef
6.
go back to reference Hartmann C, Hentschel B, Wick W, Capper D, Felsberg J et al (2010) Patients with IDH1 wild type anaplastic astrocytomas exhibit worse prognosis than IDH1-mutated glioblastomas, and IDH1 mutation status accounts for the unfavorable prognostic effect of higher age: implications for classification of gliomas. Acta Neuropathol 120:707–718PubMedCrossRef Hartmann C, Hentschel B, Wick W, Capper D, Felsberg J et al (2010) Patients with IDH1 wild type anaplastic astrocytomas exhibit worse prognosis than IDH1-mutated glioblastomas, and IDH1 mutation status accounts for the unfavorable prognostic effect of higher age: implications for classification of gliomas. Acta Neuropathol 120:707–718PubMedCrossRef
7.
go back to reference Heaphy CM, de Wilde RF, Jiao Y, Klein AP, Edil BH et al (2011) Altered telomeres in tumors with ATRX and DAXX mutations. Science 333:425PubMedCrossRef Heaphy CM, de Wilde RF, Jiao Y, Klein AP, Edil BH et al (2011) Altered telomeres in tumors with ATRX and DAXX mutations. Science 333:425PubMedCrossRef
8.
go back to reference Jiao Y, Killela PJ, Reitman ZJ, Rasheed AB, Heaphy CM et al (2012) Frequent ATRX, CIC, and FUBP1 mutations refine the classification of malignant gliomas. Oncotarget 3:709–722PubMed Jiao Y, Killela PJ, Reitman ZJ, Rasheed AB, Heaphy CM et al (2012) Frequent ATRX, CIC, and FUBP1 mutations refine the classification of malignant gliomas. Oncotarget 3:709–722PubMed
9.
go back to reference Kannan K, Inagaki A, Silber J, Gorovets D, Zhang J et al (2012) Whole-exome sequencing identifies ATRX mutation as a key molecular determinant in lower-grade glioma. Oncotarget 3:1194–2003PubMed Kannan K, Inagaki A, Silber J, Gorovets D, Zhang J et al (2012) Whole-exome sequencing identifies ATRX mutation as a key molecular determinant in lower-grade glioma. Oncotarget 3:1194–2003PubMed
10.
go back to reference Khuong-Quang D-A, Buczkowicz P, Rakopoulos P, Liu X-Y, Fontebasso AM et al (2012) K27M mutation in histone H3.3 defines clinically and biologically distinct subgroups of pediatric diffuse intrinsic pontine gliomas. Acta Neuropathol 124:439–447PubMedCrossRef Khuong-Quang D-A, Buczkowicz P, Rakopoulos P, Liu X-Y, Fontebasso AM et al (2012) K27M mutation in histone H3.3 defines clinically and biologically distinct subgroups of pediatric diffuse intrinsic pontine gliomas. Acta Neuropathol 124:439–447PubMedCrossRef
11.
go back to reference Killela PJ, Reitman ZJ, Jiao Y, Bettegowda C, Agrawal N et al (2013) TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal. Proc Natl Acad Sci USA 110:6021–6026PubMedCrossRef Killela PJ, Reitman ZJ, Jiao Y, Bettegowda C, Agrawal N et al (2013) TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal. Proc Natl Acad Sci USA 110:6021–6026PubMedCrossRef
12.
go back to reference Kros JM, Gorlia T, Kouwenhoven MC, Zheng P–P, Collins VP et al (2007) Panel review of anaplastic oligodendroglioma from European Organization for Research and Treatment of Cancer Trial 26951: assessment of consensus in diagnosis, influence of 1p/19q loss, and correlations with outcome. J Neuropathol Exp Neurol 66:545–551PubMedCrossRef Kros JM, Gorlia T, Kouwenhoven MC, Zheng P–P, Collins VP et al (2007) Panel review of anaplastic oligodendroglioma from European Organization for Research and Treatment of Cancer Trial 26951: assessment of consensus in diagnosis, influence of 1p/19q loss, and correlations with outcome. J Neuropathol Exp Neurol 66:545–551PubMedCrossRef
13.
go back to reference Lacayo NJ, Meshinchi S, Kinnunen P, Yu R, Wang Y et al (2004) Gene expression profiles at diagnosis in de novo childhood AML patients identify FLT3 mutations with good clinical outcomes. Blood 104:2646–2654PubMedCrossRef Lacayo NJ, Meshinchi S, Kinnunen P, Yu R, Wang Y et al (2004) Gene expression profiles at diagnosis in de novo childhood AML patients identify FLT3 mutations with good clinical outcomes. Blood 104:2646–2654PubMedCrossRef
14.
go back to reference Lai A, Kharbanda S, Pope WB, Tran A, Solis OE et al (2011) Evidence for sequenced molecular evolution of IDH1 mutant glioblastoma from a distinct cell of origin. J Clin Oncol: Off J Am Soc Clin Oncol 29:4482–4490CrossRef Lai A, Kharbanda S, Pope WB, Tran A, Solis OE et al (2011) Evidence for sequenced molecular evolution of IDH1 mutant glioblastoma from a distinct cell of origin. J Clin Oncol: Off J Am Soc Clin Oncol 29:4482–4490CrossRef
15.
go back to reference Liu X-Y, Gerges N, Korshunov A, Sabha N, Khuong-Quang D-A et al (2012) Frequent ATRX mutations and loss of expression in adult diffuse astrocytic tumors carrying IDH1/IDH2 and TP53 mutations. Acta Neuropathol 124:615–625PubMedCrossRef Liu X-Y, Gerges N, Korshunov A, Sabha N, Khuong-Quang D-A et al (2012) Frequent ATRX mutations and loss of expression in adult diffuse astrocytic tumors carrying IDH1/IDH2 and TP53 mutations. Acta Neuropathol 124:615–625PubMedCrossRef
16.
go back to reference Louis DN, Ohgaki H, Wiestler OD, Cavenee WK, Burger PC et al (2007) The 2007 WHO classification of tumours of the central nervous system. Acta Neuropathol 114:97–109PubMedCrossRef Louis DN, Ohgaki H, Wiestler OD, Cavenee WK, Burger PC et al (2007) The 2007 WHO classification of tumours of the central nervous system. Acta Neuropathol 114:97–109PubMedCrossRef
17.
go back to reference Maintz D, Fiedler K, Koopmann J, Rollbrocker B, Nechev S et al (1997) Molecular genetic evidence for subtypes of oligoastrocytomas. J Neuropathol Exp Neurol 56:1098–1104PubMedCrossRef Maintz D, Fiedler K, Koopmann J, Rollbrocker B, Nechev S et al (1997) Molecular genetic evidence for subtypes of oligoastrocytomas. J Neuropathol Exp Neurol 56:1098–1104PubMedCrossRef
18.
go back to reference Miller CR, Dunham CP, Scheithauer BW, Perry A (2006) Significance of necrosis in grading of oligodendroglial neoplasms: a clinicopathologic and genetic study of newly diagnosed high-grade gliomas. J Clin Oncol 24:5419–5426PubMedCrossRef Miller CR, Dunham CP, Scheithauer BW, Perry A (2006) Significance of necrosis in grading of oligodendroglial neoplasms: a clinicopathologic and genetic study of newly diagnosed high-grade gliomas. J Clin Oncol 24:5419–5426PubMedCrossRef
19.
go back to reference Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K et al (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17:510–522PubMedCrossRef Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K et al (2010) Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 17:510–522PubMedCrossRef
20.
go back to reference Schwartzentruber J, Korshunov A, Liu X-Y, Jones DTW, Pfaff E et al (2012) Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma. Nature 482:226–231PubMedCrossRef Schwartzentruber J, Korshunov A, Liu X-Y, Jones DTW, Pfaff E et al (2012) Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma. Nature 482:226–231PubMedCrossRef
21.
go back to reference Smith JS, Perry A, Borell TJ, Lee HK, O’Fallon J et al (2000) Alterations of chromosome arms 1p and 19q as predictors of survival in oligodendrogliomas, astrocytomas, and mixed oligoastrocytomas. J Clin Oncol 18:636–645PubMed Smith JS, Perry A, Borell TJ, Lee HK, O’Fallon J et al (2000) Alterations of chromosome arms 1p and 19q as predictors of survival in oligodendrogliomas, astrocytomas, and mixed oligoastrocytomas. J Clin Oncol 18:636–645PubMed
22.
go back to reference Sturm D, Witt H, Hovestadt V, Khuong-Quang D-A, Jones DTW et al (2012) Hotspot mutations in H3F3A and IDH1 define distinct epigenetic and biological subgroups of glioblastoma. Cancer Cell 22:425–437PubMedCrossRef Sturm D, Witt H, Hovestadt V, Khuong-Quang D-A, Jones DTW et al (2012) Hotspot mutations in H3F3A and IDH1 define distinct epigenetic and biological subgroups of glioblastoma. Cancer Cell 22:425–437PubMedCrossRef
23.
go back to reference Turcan S, Rohle D, Goenka A, Walsh LA, Fang F et al (2012) IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype. Nature 483:479–483PubMedCrossRef Turcan S, Rohle D, Goenka A, Walsh LA, Fang F et al (2012) IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype. Nature 483:479–483PubMedCrossRef
24.
go back to reference Verhaak RGW, Hoadley KA, Purdom E, Wang V, Qi Y et al (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 17:98–110PubMedCrossRef Verhaak RGW, Hoadley KA, Purdom E, Wang V, Qi Y et al (2010) Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. Cancer Cell 17:98–110PubMedCrossRef
25.
go back to reference Weisbrod AB, Zhang L, Jain M, Barak S, Quezado MM, Kebebew E (2013) Altered PTEN, ATRX, CHGA, CHGB, and TP53 expression are associated with aggressive VHL-associated pancreatic neuroendocrine tumors. Horm cancer 4:165–175PubMedCrossRef Weisbrod AB, Zhang L, Jain M, Barak S, Quezado MM, Kebebew E (2013) Altered PTEN, ATRX, CHGA, CHGB, and TP53 expression are associated with aggressive VHL-associated pancreatic neuroendocrine tumors. Horm cancer 4:165–175PubMedCrossRef
26.
go back to reference Weller M, Stupp R, Hegi ME, van den Bent M, Tonn JC et al (2012) Personalized care in neurooncology coming of age: why we need MGMT and 1p/19q testing for malignant glioma patients in clinical practice. Neurooncology 14(Suppl 4):iv100–iv108 Weller M, Stupp R, Hegi ME, van den Bent M, Tonn JC et al (2012) Personalized care in neurooncology coming of age: why we need MGMT and 1p/19q testing for malignant glioma patients in clinical practice. Neurooncology 14(Suppl 4):iv100–iv108
27.
go back to reference Wick W, Hartmann C, Engel C, Stoffels M, Felsberg J et al (2009) NOA-04 randomized phase III trial of sequential radiochemotherapy of anaplastic glioma with procarbazine, lomustine, and vincristine or temozolomide. J Clin Oncol 27:5874–5880PubMedCrossRef Wick W, Hartmann C, Engel C, Stoffels M, Felsberg J et al (2009) NOA-04 randomized phase III trial of sequential radiochemotherapy of anaplastic glioma with procarbazine, lomustine, and vincristine or temozolomide. J Clin Oncol 27:5874–5880PubMedCrossRef
Metadata
Title
ATRX loss refines the classification of anaplastic gliomas and identifies a subgroup of IDH mutant astrocytic tumors with better prognosis
Authors
Benedikt Wiestler
David Capper
Tim Holland-Letz
Andrey Korshunov
Andreas von Deimling
Stefan Michael Pfister
Michael Platten
Michael Weller
Wolfgang Wick
Publication date
01-09-2013
Publisher
Springer Berlin Heidelberg
Published in
Acta Neuropathologica / Issue 3/2013
Print ISSN: 0001-6322
Electronic ISSN: 1432-0533
DOI
https://doi.org/10.1007/s00401-013-1156-z

Other articles of this Issue 3/2013

Acta Neuropathologica 3/2013 Go to the issue