Skip to main content
Top
Published in: European Radiology 8/2019

01-08-2019 | Oncology

Differentiation between pilocytic astrocytoma and glioblastoma: a decision tree model using contrast-enhanced magnetic resonance imaging-derived quantitative radiomic features

Authors: Fei Dong, Qian Li, Duo Xu, Wenji Xiu, Qiang Zeng, Xiuliang Zhu, Fangfang Xu, Biao Jiang, Minming Zhang

Published in: European Radiology | Issue 8/2019

Login to get access

Abstract

Objective

To differentiate brain pilocytic astrocytoma (PA) from glioblastoma (GBM) using contrast-enhanced magnetic resonance imaging (MRI) quantitative radiomic features by a decision tree model.

Methods

Sixty-six patients from two centres (PA, n = 31; GBM, n = 35) were randomly divided into training and validation data sets (about 2:1). Quantitative radiomic features of the tumours were extracted from contrast-enhanced MR images. A subset of features was selected by feature stability and Boruta algorithm. The selected features were used to build a decision tree model. Predictive accuracy, sensitivity and specificity were used to assess model performance. The classification outcome of the model was combined with tumour location, age and gender features, and multivariable logistic regression analysis and permutation test using the entire data set were performed to further evaluate the decision tree model.

Results

A total of 271 radiomic features were successfully extracted for each tumour. Twelve features were selected as input variables to build the decision tree model. Two features S(1, -1) Entropy and S(2, -2) SumAverg were finally included in the model. The model showed an accuracy, sensitivity and specificity of 0.87, 0.90 and 0.83 for the training data set and 0.86, 0.80 and 0.91 for the validation data set. The classification outcome of the model related to the actual tumour types and did not rely on the other three features (p < 0.001).

Conclusions

A decision tree model with two features derived from the contrast-enhanced MR images performed well in differentiating PA from GBM.

Key Points

MRI findings of PA and GBM are sometimes very similar.
Radiomics provides much more quantitative information about tumours.
Radiomic features can help to distinguish PA from GBM.
Literature
1.
go back to reference Gaudino S, Martucci M, Russo R et al (2017) MR imaging of brain pilocytic astrocytoma: beyond the stereotype of benign astrocytoma. Childs Nerv Syst 33:35–54CrossRefPubMed Gaudino S, Martucci M, Russo R et al (2017) MR imaging of brain pilocytic astrocytoma: beyond the stereotype of benign astrocytoma. Childs Nerv Syst 33:35–54CrossRefPubMed
3.
go back to reference Alifieris C, Trafalis DT (2015) Glioblastoma multiforme: pathogenesis and treatment. Pharmacol Ther 152:63–82CrossRefPubMed Alifieris C, Trafalis DT (2015) Glioblastoma multiforme: pathogenesis and treatment. Pharmacol Ther 152:63–82CrossRefPubMed
4.
go back to reference Alford R, Gargan L, Bowers DC, Klesse LJ, Weprin B, Koral K (2016) Postoperative surveillance of pediatric cerebellar pilocytic astrocytoma. J Neurooncol 130:149–154CrossRefPubMed Alford R, Gargan L, Bowers DC, Klesse LJ, Weprin B, Koral K (2016) Postoperative surveillance of pediatric cerebellar pilocytic astrocytoma. J Neurooncol 130:149–154CrossRefPubMed
5.
go back to reference Cykowski MD, Allen RA, Kanaly AC et al (2013) The differential diagnosis of pilocytic astrocytoma with atypical features and malignant glioma: an analysis of 16 cases with emphasis on distinguishing molecular features. J Neurooncol 115:477–486CrossRefPubMed Cykowski MD, Allen RA, Kanaly AC et al (2013) The differential diagnosis of pilocytic astrocytoma with atypical features and malignant glioma: an analysis of 16 cases with emphasis on distinguishing molecular features. J Neurooncol 115:477–486CrossRefPubMed
6.
go back to reference Gillies RJ, Kinahan PE, Hricak H (2016) Radiomics: images are more than pictures, they are data. Radiology 278:563–577CrossRefPubMed Gillies RJ, Kinahan PE, Hricak H (2016) Radiomics: images are more than pictures, they are data. Radiology 278:563–577CrossRefPubMed
8.
go back to reference Rau CS, Wu SC, Chien PC et al (2018) Identification of pancreatic injury in patients with elevated amylase or lipase level using a decision tree classifier: a cross-sectional retrospective analysis in a level I trauma center. Int J Environ Res Public Health. https://doi.org/10.3390/ijerph15020277 Rau CS, Wu SC, Chien PC et al (2018) Identification of pancreatic injury in patients with elevated amylase or lipase level using a decision tree classifier: a cross-sectional retrospective analysis in a level I trauma center. Int J Environ Res Public Health. https://​doi.​org/​10.​3390/​ijerph15020277
9.
go back to reference El Hentour K, Millet I, Pages-Bouic E, Curros-Doyon F, Molinari N, Taourel P (2018) How to differentiate acute pelvic inflammatory disease from acute appendicitis ? A decision tree based on CT findings. Eur Radiol 28:673–682CrossRefPubMed El Hentour K, Millet I, Pages-Bouic E, Curros-Doyon F, Molinari N, Taourel P (2018) How to differentiate acute pelvic inflammatory disease from acute appendicitis ? A decision tree based on CT findings. Eur Radiol 28:673–682CrossRefPubMed
10.
go back to reference Zimmerman RK, Balasubramani GK, Nowalk MP et al (2016) Classification and regression tree (CART) analysis to predict influenza in primary care patients. BMC Infect Dis 16:503CrossRefPubMedPubMedCentral Zimmerman RK, Balasubramani GK, Nowalk MP et al (2016) Classification and regression tree (CART) analysis to predict influenza in primary care patients. BMC Infect Dis 16:503CrossRefPubMedPubMedCentral
11.
go back to reference Strzelecki M, Szczypinski P, Materka A, Klepaczko A (2013) A software tool for automatic classification and segmentation of 2D/3D medical images. Nucl Instrum Methods Phys Res 702:137–140CrossRef Strzelecki M, Szczypinski P, Materka A, Klepaczko A (2013) A software tool for automatic classification and segmentation of 2D/3D medical images. Nucl Instrum Methods Phys Res 702:137–140CrossRef
12.
go back to reference Szczypiński PM, Strzelecki M, Materka A, Klepaczko A (2009) MaZda–a software package for image texture analysis. Comput Methods Programs Biomed 94:66–76CrossRefPubMed Szczypiński PM, Strzelecki M, Materka A, Klepaczko A (2009) MaZda–a software package for image texture analysis. Comput Methods Programs Biomed 94:66–76CrossRefPubMed
13.
go back to reference Szczypiński PM, Strzelecki M, Materka A (2007) MaZda–a software for texture analysis. Proc of ISITC, Republic of Korea, p 245–249 Szczypiński PM, Strzelecki M, Materka A (2007) MaZda–a software for texture analysis. Proc of ISITC, Republic of Korea, p 245–249
14.
go back to reference Baessler B, Mannil M, Oebel S, Maintz D, Alkadhi H, Manka R (2018) Subacute and chronic left ventricular myocardial scar: accuracy of texture analysis on nonenhanced cine MR images. Radiology 286:103–112CrossRefPubMed Baessler B, Mannil M, Oebel S, Maintz D, Alkadhi H, Manka R (2018) Subacute and chronic left ventricular myocardial scar: accuracy of texture analysis on nonenhanced cine MR images. Radiology 286:103–112CrossRefPubMed
15.
go back to reference Yuan M, Zhang YD, Pu XH et al (2017) Comparison of a radiomic biomarker with volumetric analysis for decoding tumour phenotypes of lung adenocarcinoma with different disease-specific survival. Eur Radiol 27:4857–4865 Yuan M, Zhang YD, Pu XH et al (2017) Comparison of a radiomic biomarker with volumetric analysis for decoding tumour phenotypes of lung adenocarcinoma with different disease-specific survival. Eur Radiol 27:4857–4865
16.
go back to reference Kursa MB, Rudnicki WR (2010) Feature selection with the Boruta package. J Stat Softw 36:1–13CrossRef Kursa MB, Rudnicki WR (2010) Feature selection with the Boruta package. J Stat Softw 36:1–13CrossRef
17.
go back to reference Khalkhali HR, Lotfnezhad Afshar H, Esnaashari O, Jabbari N (2016) Applying data mining techniques to extract hidden patterns about breast cancer survival in an Iranian cohort study. J Res Health Sci 16:31–35PubMed Khalkhali HR, Lotfnezhad Afshar H, Esnaashari O, Jabbari N (2016) Applying data mining techniques to extract hidden patterns about breast cancer survival in an Iranian cohort study. J Res Health Sci 16:31–35PubMed
18.
go back to reference Tempany CM, Zou KH, Silverman SG, Brown DL, Kurtz AB, McNeil BJ (2000) Staging of advanced ovarian cancer: comparison of imaging modalities–report from the Radiological Diagnostic Oncology Group. Radiology 215:761–767CrossRefPubMed Tempany CM, Zou KH, Silverman SG, Brown DL, Kurtz AB, McNeil BJ (2000) Staging of advanced ovarian cancer: comparison of imaging modalities–report from the Radiological Diagnostic Oncology Group. Radiology 215:761–767CrossRefPubMed
20.
go back to reference Sato K, Rorke LB (1989) Vascular bundles and wickerworks in childhood brain tumors. Pediatr Neurosci 15:105–110CrossRefPubMed Sato K, Rorke LB (1989) Vascular bundles and wickerworks in childhood brain tumors. Pediatr Neurosci 15:105–110CrossRefPubMed
21.
go back to reference Smirniotopoulos JG, Murphy FM, Rushing EJ, Rees JH, Schroeder JW (2007) Patterns of contrast enhancement in the brain and meninges. Radiographics 27:525–551CrossRefPubMed Smirniotopoulos JG, Murphy FM, Rushing EJ, Rees JH, Schroeder JW (2007) Patterns of contrast enhancement in the brain and meninges. Radiographics 27:525–551CrossRefPubMed
22.
go back to reference Aldape K, Zadeh G, Mansouri S, Reifenberger G, von Deimling A (2015) Glioblastoma: pathology, molecular mechanisms and markers. Acta Neuropathol 129:829–848CrossRefPubMed Aldape K, Zadeh G, Mansouri S, Reifenberger G, von Deimling A (2015) Glioblastoma: pathology, molecular mechanisms and markers. Acta Neuropathol 129:829–848CrossRefPubMed
23.
go back to reference Crespo I, Vital AL, Gonzalez-Tablas M et al (2015) Molecular and genomic alterations in glioblastoma multiforme. Am J Pathol 185:1820–1833CrossRefPubMed Crespo I, Vital AL, Gonzalez-Tablas M et al (2015) Molecular and genomic alterations in glioblastoma multiforme. Am J Pathol 185:1820–1833CrossRefPubMed
25.
go back to reference Johnson DR, Brown PD, Galanis E, Hammack JE (2012) Pilocytic astrocytoma survival in adults: analysis of the Surveillance, Epidemiology, and End Results Program of the National Cancer Institute. J Neurooncol 108:187–193CrossRefPubMed Johnson DR, Brown PD, Galanis E, Hammack JE (2012) Pilocytic astrocytoma survival in adults: analysis of the Surveillance, Epidemiology, and End Results Program of the National Cancer Institute. J Neurooncol 108:187–193CrossRefPubMed
26.
go back to reference Cyrine S, Sonia Z, Mounir T et al (2013) Pilocytic astrocytoma: a retrospective study of 32 cases. Clin Neurol Neurosurg 115:1220–1225 Cyrine S, Sonia Z, Mounir T et al (2013) Pilocytic astrocytoma: a retrospective study of 32 cases. Clin Neurol Neurosurg 115:1220–1225
27.
go back to reference Murray RD, Penar PL, Filippi CG, Tarasiewicz I (2011) Radiographically distinct variant of pilocytic astrocytoma: a case series. J Comput Assist Tomogr 35:495–497CrossRefPubMed Murray RD, Penar PL, Filippi CG, Tarasiewicz I (2011) Radiographically distinct variant of pilocytic astrocytoma: a case series. J Comput Assist Tomogr 35:495–497CrossRefPubMed
28.
go back to reference Zhou M, Scott J, Chaudhury B et al (2018) Radiomics in brain tumor: image assessment, quantitative feature descriptors, and machine-learning approaches. AJNR Am J Neuroradiol 39:208–216CrossRefPubMedPubMedCentral Zhou M, Scott J, Chaudhury B et al (2018) Radiomics in brain tumor: image assessment, quantitative feature descriptors, and machine-learning approaches. AJNR Am J Neuroradiol 39:208–216CrossRefPubMedPubMedCentral
29.
go back to reference Narang S, Lehrer M, Yang D, Lee J, Rao A (2016) Radiomics in glioblastoma: current status, challenges and potential opportunities. Transl Cancer Res 5:383–397 Narang S, Lehrer M, Yang D, Lee J, Rao A (2016) Radiomics in glioblastoma: current status, challenges and potential opportunities. Transl Cancer Res 5:383–397
30.
go back to reference Avanzo M, Stancanello J, El Naqa I (2017) Beyond imaging: the promise of radiomics. Phys Med 38:122–139CrossRefPubMed Avanzo M, Stancanello J, El Naqa I (2017) Beyond imaging: the promise of radiomics. Phys Med 38:122–139CrossRefPubMed
31.
go back to reference Shofty B, Artzi M, Ben Bashat D et al (2018) MRI radiomics analysis of molecular alterations in low-grade gliomas. Int J Comput Assist Radiol Surg 13:563–571CrossRefPubMed Shofty B, Artzi M, Ben Bashat D et al (2018) MRI radiomics analysis of molecular alterations in low-grade gliomas. Int J Comput Assist Radiol Surg 13:563–571CrossRefPubMed
33.
go back to reference Zhang Z, Yang J, Ho A et al (2018) A predictive model for distinguishing radiation necrosis from tumour progression after gamma knife radiosurgery based on radiomic features from MR images. Eur Radiol 28:2255–2263CrossRefPubMed Zhang Z, Yang J, Ho A et al (2018) A predictive model for distinguishing radiation necrosis from tumour progression after gamma knife radiosurgery based on radiomic features from MR images. Eur Radiol 28:2255–2263CrossRefPubMed
34.
go back to reference Li Y, Liu X, Qian Z et al (2018) Genotype prediction of ATRX mutation in lower-grade gliomas using an MRI radiomics signature. Eur Radiol 28:2960–2968CrossRefPubMed Li Y, Liu X, Qian Z et al (2018) Genotype prediction of ATRX mutation in lower-grade gliomas using an MRI radiomics signature. Eur Radiol 28:2960–2968CrossRefPubMed
36.
go back to reference Prasanna P, Tiwari P, Madabhushi A (2014) Co-occurrence of local anisotropic gradient orientations (CoLIAGe): distinguishing tumor confounders and molecular subtypes on MRI. Med Image Comput Comput Assist Interv 17:73–80PubMed Prasanna P, Tiwari P, Madabhushi A (2014) Co-occurrence of local anisotropic gradient orientations (CoLIAGe): distinguishing tumor confounders and molecular subtypes on MRI. Med Image Comput Comput Assist Interv 17:73–80PubMed
Metadata
Title
Differentiation between pilocytic astrocytoma and glioblastoma: a decision tree model using contrast-enhanced magnetic resonance imaging-derived quantitative radiomic features
Authors
Fei Dong
Qian Li
Duo Xu
Wenji Xiu
Qiang Zeng
Xiuliang Zhu
Fangfang Xu
Biao Jiang
Minming Zhang
Publication date
01-08-2019
Publisher
Springer Berlin Heidelberg
Published in
European Radiology / Issue 8/2019
Print ISSN: 0938-7994
Electronic ISSN: 1432-1084
DOI
https://doi.org/10.1007/s00330-018-5706-6

Other articles of this Issue 8/2019

European Radiology 8/2019 Go to the issue